Digital Commons Network^™

Engineering Calpastatin To Develop A Sensor To Detect Active Calpain, Lisa M. Vanhooser

Electronic Theses and Dissertations

Calpains, Ca²⁺-activated cysteine proteases are essential for early embryonic development and function in signal transduction, cell adhesion, and apoptosis. Calpains also contribute to cataractogenesis, myocardial infarctions, and neurodegenerative diseases such as Alzheimer's. The various methods currently available to demonstrate these roles do not directly identify spatial or temporal activation of calpain in cells. Therefore, a tool to detect active calpain in situ will be useful. Calpastatin is the ubiquitous, endogenous inhibitor that specifically binds the active conformation of the conventional calpains. Calpastatin consists of four homologous domains each containing three subdomains A, B, and C. The crystal structure …

Determining Environmental Drivers Of Fish Community Structure Along The Coast Of Maine, Adrian Jordaan

Electronic Theses and Dissertations

The work presented here was conceived to determine whether structure in marine communities could be related to multiple scaled environmental parameters, as seen in lake and stream systems. Four datasets collected from 2001 to 2005 were used. The datasets ranged from local scale tidepool and estuarine surveys, to more regional intertidal/subtidal surveys and conclude using a coast-wide trawl survey. Initially, a bootstrap program for running principal component analysis (PCA) was developed and tested for utility with additional information from Pearson correlation coefficients. The bootstrap-PC A program was capable of determining confidence limits for correlations amongst species. The results from analysis …

Diel And Tidal Rhythms Of Emercenge Events Based On Acousitc Observations In A Shallow Estuary, Mei Sato

Electronic Theses and Dissertations

Field observations of emergence events by epibenthic animals were conducted with two Tracor Acoustic Profiling Systems (TAPS) in the Damariscotta River estuary, Maine, in fall 2005 and summer 2006. Spectral analysis revealed that periodic temporal variability of the acoustic signals was concentrated at four periods. One was the solar day (24 h) and the other three were lunar tidal periods of 25.82 (diurnal or Oi), 12.42 (semidiurnal or M2) and 6.21 h (half the semidiurnal period). The mysid Neomysis americana showed strong nocturnal migration patterns of water-column activity during its peak summer emergence season, regulated by the diel cycle. Toward …

The Effects Of Prescribed Fire On The Herbaceous Layer In The Southern Appalachian Mountains., Michael Lee Zimmerman

Electronic Theses and Dissertations

Prescribed fire in the southern Appalachians is a frequently used and controversial forest management practice. Research is limited on the effects of prescribed fire in the mesic southern Appalachians, where many of Tennessee's rare and regionally endemic plant species occur. This study examined the effects of prescribed fire on the herbaceous layer. Field work was conducted on six previously burned sites within the Cherokee National Forest in northeast Tennessee. Complimentary non-burned sites were selected based on similarity of physical characteristics and forest structure. The numbers of herbaceous species and individuals and the total numbers of species and individuals were determined …

Seasonal Territoriality In The Carolina Wren, Thryothorus Ludovicianus, To Visual And Vocal Stimuli., Mark Allen Dunaway

Electronic Theses and Dissertations

Carolina Wrens, Thryothorus ludovicianus, are permanent residents throughout their range. They form pair bonds at a young age, maintain these bonds for multiple years, and defend feeding/breeding territories year round. Male Carolina Wrens use songs in territorial defense and have been shown to countersing regularly to both neighbors and intruders. They use various song characteristics to determine the location of another bird and whether its territory has been invaded.

Wrens often approach playbacks silently in apparent searching behavior. In some cases, birds will investigate the playback but fail to countersing. I wanted to determine whether or not wrens would …

Latex Of Sciadopitys Verticillata (Thunb.) Siebold And Zuccarini: Antibiotic Properties, Phytochemistry, And Inhibition Of Adventitious Rooting Of Stem Cuttings., David Ira Yates

Electronic Theses and Dissertations

Sciadopitys verticillata was subjected to three propagation treatments designed to inhibit coagulation of its latex-like sap at the cut ends of the stem cuttings. Twenty-four hour soaking in water prior to rooting hormone application significantly enhanced production of adventitious roots. Old wood stem cuttings from shade-grown trees rooted at higher proportions than stem cuttings collected from sun-grown trees. Height, age, and place of origin of the source trees were not important factors in successful rooting. Antibacterial activity against some human pathogens and soil bacterial species was detected in latex application trials but the antibiotic activity was not related to the …

Determination Of Cholesterol In Foods By Flow Injection Analysis With Perroxyoxalate Chemiluminescence., Abisake Feleke

Electronic Theses and Dissertations

Cholesterol is an important biological molecule with many important functions. However, high serum cholesterol is a health hazard. Thus analysis of cholesterol is important and many analytical techniques have been developed. The objectives of the proposed research are to develop an economical, rapid method for the determination of total cholesterol with good selectivity and enhanced sensitivity. For evaluation of proposed flow injection analysis with peroxyoxalate chemiluminescence (FIA-POCL) method, figures of merit such as accuracy, precision, and linear dynamic range will be assessed. The proposed procedure was then applied to the determination of total cholesterol in foods. The procedure was linear …

Physical And Behavioral Development Of Nursing Harbor Seal (Phoca Vitulina) Pups In Maine, John P. Skinner

Electronic Theses and Dissertations

Compared to other phocids seals, the maternal investment strategy of the small bodied female harbor seal (Phoca vitulina) is complex. Females are unable to fast for the entire duration of pup rearing and are therefore reliant on resources in the vicinity of the pupping aggregation to continue provisioning their pup by mid-lactation. At the same time, harbor seal pups are highly active during lactation which increases energetic costs to the female but also offers an opportunity for females to influence the behavioral development of her pup. To understand how females maximize their pup's survival it is important to …

Semi-Global Analysis Of The Early Cold Stress Response Transcriptome Of Developing Seedlings Of Rice (Oryzasativa L.,Japonica), Chen Cheng

Electronic Theses and Dissertations

Plants are either sensitive or insensitive to low temperatures. Cool-season species acclimate to chilling and develop tolerance to freezing. Warm-season species vary in the degree of sensitivity to chilling and are not capable of acclimation. Both freezing and chilling tolerance involve the activity of an intricately coordinated network of genes. The regulatory network that defines cold acclimation and freezing tolerance is well understood in Arabidopsis. The centerpiece of this network is a group of transcriptional activators that coordinate a battery of downstream defense-related genes. In contrast, little is known about the corresponding regulon in non-acclimating species. This study utilized …

Oxalate Production And Cation Translocation During Wood Biodegredation By Fungi, Jonathan S. Schilling

Electronic Theses and Dissertations

Wood biodegradation is primarily caused by Basidiomycetous white or brown rot fungi. White rot fungi are unique in degrading lignin, while brown rot fungi circumvent lignin to degrade holocellulose via iron-dependent oxidative chemistry. Both groups of fungi produce oxalate during wood metabolism, and oxalic acid secretion may promote wood decay by reducing pH, mobilizing iron, detoxifying copper, and immobilizing calcium. The function of oxalate during wood decay remains unclear, however, primarily due to difficulties in extracting bound oxalate and to inconsistencies among analytical techniques. This work aims to improve oxalate quantification during wood biodegradation and to better characterize fungal oxalate …

A Spatial Anaylsis Of Passenger Vehicle Attributes, Environmental Impact And Policy, Gregory M. Gould

Electronic Theses and Dissertations

Passenger vehicle use contributes significantly to energy consumption, criteria air pollution and greenhouse gas (GHG) emissions. Recent developments in Geographic Information Systems (GIS) and Vehicle Identification Number (VIN) decoding enable researchers to make use of vehicle registration records to consider the spatial distribution of the vehicle fleet when modeling emissions. In this thesis, these techniques are used to view spatial variation in passenger vehicle attributes and environmental characteristics. The distributions of vehicle type, make and model, size, age, criteria and GHG emission rates, and fuel economy are analyzed. Next, the spatial distribution of private costs and benefits resulting from a …

Ecological Relationships Among Partial Harvesting, Vegetation, Snowshoe Hares, And Canada Lynx In Maine, Laura Robinson

Electronic Theses and Dissertations

Understanding the ecological factors affecting habitat use by the Canada lynx (Lynx canadensis) and its primary prey, the snowshoe hare (Lepus americanus), could help formulate conservation strategies for this carnivore, which is federally listed as threatened and occurs in only four regions of the U.S.A. I measured vegetation characteristics and snowshoe hare densities in 15 regenerating conifer clearcuts and 21 partially harvested stands in northern Maine during the leaf-off seasons, 2005 and 2006; and the leaf-on season, 2005. Regenerating clearcut stands had been harvested between 1974 and 1985 and were subsequently treated with an aerial application …

Modeling Large Whale Entanglement Injuries: An Experimental Analysis Of The Influence Of Tissue Compliance, Line Tension, And Draw-Length On Epidermal Abrasion Resistance, Jeremy Paul Winn

Electronic Theses and Dissertations

Two test systems were developed to evaluate the influence of draw-length and tissue compliance on entanglement-induced epidermal abrasion in humpback (Megaptera novaeangliae) and right whale (Eubalaena glacialis) tissue samples. Under straight pull abrasion tests an adult right whale fluke required 3.7 times the load and 15 times the draw-length of a right whale calf flipper to induce epidermal failure while a humpback fluke was intermediate between these extremes. Epidermal thickness did not appear to be the cause of this difference in abrasion resistance. Epidermal thickness averaged 8.0k0.2 mm for the calf flipper, 4.9k0.4 rnrn for the humpback fluke, and 5.1k0.1 …

Previous Spatial Memory Training And Nicotine Administration Alleviates Cognitive Deficits Produced By Medial Frontal Cortex Lesions In Rats., Rachel L. Norris

Electronic Theses and Dissertations

Rats were administered nicotine (0.3 mg/kg) for 11 consecutive days before and after an electrolytic medial frontal cortex lesion. Behavioral testing was arranged so that the rats were tested on the RAM 1 day after drug administration followed by behavioral testing on the MWT 19 days after drug treatment, or tested on the MWT 1 day after drug administration followed by testing on the RAM4 days after drug treatment. Results of MWT testing showed that regardless of the drug/behavioral testing interval, lesioned rats given nicotine demonstrated enhancement relative to saline-treated animals. Results of RAM testing showed that nicotine improved performance …

Conjugative Transfer Pathways Of High-Level Mupirocin Resistance And Conjugative Transfer Genes In Staphylococcus., Danielle Barnard

Electronic Theses and Dissertations

To combat widespread infections caused by Staphylococcus aureus, mupirocin was introduced at the Veterans Affairs Medical Center, Mountain Home, Tennessee. Soon after introduction, high-level mupirocin-resistance emerged. The rapid emergence was hypothesized to be due to conjugative transfer of the mupA resistance gene from S. epidermidis to S. aureus. Results have shown that transfer of high-level mupirocin-resistance from S. aureus donors commonly occurs. However, transfer from naturally-occurring S. epidermidis donors was not attainable. Staphylococcus epidermidis transconjugants, however, were capable of serving as donors. Further examination of non-transmissibility included PCR analysis of conjugative transfer genes (tra genes) in capable …

The Cost Of Mupirocin Resistance In Staphylococcus., Susan D. Reynolds

Electronic Theses and Dissertations

Control of antibiotic resistance in bacteria is based on the concept that resistance incurs a fitness cost in non-selective conditions. Fitness costs were assessed for low- and high-level mupirocin resistance in locally-derived Staphylococcus aureus and S. epidermidis. Costs of resistance were assessed in pure cultures by comparing growth curve characteristics and in mixed culture as the proportion of resistant cells surviving. Costs were not present in comparisons of growth rates among groups of naturally-occurring isolates from the different resistance categories. However, in S. aureus, growth rates within resistance categories differed by approximately 30 – 90%. Among near-isogenic pairs …

Structure-Function Analysis Of Nrage: A Protein Involved In Developmental Neural Apoptosis, Rebecca Cowling

Electronic Theses and Dissertations

The Neurotrophins and Bone Morphogenic Proteins (BMP) have both been implicated in the maintenance of cellular proliferation and apoptosis in the developing nervous system. Downstream of both signaling pathways is NRAGE, a member of the Melanoma Antigen (MAGE) gene family and, under BMP stimulation, activates p38 leading to caspase 3 cleavage. NRAGE possesses a highly conserved MAGE Homology Domain (MHD) and a second, less well conserved MHD (denoted MHD2) as well as a unique 25 tandem WQXPXX hexapeptide repeat region. Binding partners for the MHD and hexapeptide repeat regions have been identified but their cellular consequences have not been defined. …

Distribution And Diversity Of Bacterial Chemolithotrophs In Marine And Freshwater Sediments, Lisa M. Nigro

Electronic Theses and Dissertations

Bacterial chemolithotroph population structure has been investigated in Lowes Cove marine intertidal mudflat and Damariscotta Lake, Maine. A 492 to 495 fragment of the cbbL gene, coding for the large subunit of Form I ribulose-1,5- bisphosphate carboxylase/oxygenase (rubisco) was amplified from lake surface (upper 2 mm) sediments and mudflat surface (upper 2 mm), subsurface (5-7 cm), and Mya arenaria burrow wall sediments, as well as sulfide-oxidizing bacterial mat samples. Amplified DNA was used to construct cbbL clone libraries. Phylogenetic analysis showed that Damariscotta Lake cbbL clones were mainly of the 1C type, indicating a facultative carbon monoxide/hydrogen-oxidizing community. Conversely, clones …

State Of Maine Forester Licensure Program And Policy Review, Stephen F. Holt

Electronic Theses and Dissertations

Despite the continued importance of the forest resources to the State of Maine that led to the initial forester registration law in 1975, forester regulation has been the subject of only one program audit and policy review. That occurred 20 years ago, in 1986.

It is important to understand the need for a periodic forester regulatory program review even if there are no currently apparent or expected public interest or resource protection related issues.

There have been many significant changes since the last forester regulatory program and policy review that have impacted forest policy, management, and the related forestry based …

Dynamics Of Forest Structure Under Different Silvicultural Regimes In The Acadian Forest, Michael R. Saunders

Electronic Theses and Dissertations

Research plots in many long-term studies of forest ecosystems often cannot be used for spatial modeling because of their small scale and nested inventory design. This has been unfortunate as these plots represent some of the best records of structural development as affected by forest management. I developed methodologies to reconstruct both tree height growth and spatial pattern in these types of plots from historical inventory records and stem-mapped data, and then retrospectively investigated 3-dimensional structural development as affected by five silvicultural and harvesting treatments (unmanaged natural area, commercial clearcut, fixed-diameter limit, 5-year selection, and 3-stage shelterwood— with and without …

Use Of Cerium Oxide Nanoparticles For Protection Against Radiation-Induced Cell Death, Jimmie Colon

Electronic Theses and Dissertations

The ability of engineered cerium oxide nanoparticles to confer radioprotection was examined. Rat astrocytes were treated with cerium oxide nanoparticles to a final concentration of 10 nanomolar, irradiated with a single 10 Gy dose of ionizing radiation and cell death was evaluated by propidium iodine uptake at 24 and 48 hours after radiation insult. Treatment of rat astrocytes with nanoceria resulted in an approximate 3-fold decrease in radiation induced death. These results suggest that the nanoceria are conferring protection from radiation induced cell death. Further experiments with human cells were conducted. Human normal and tumor cells (MCF-7 and CRL8798) were …

Characterization And Evaluation Of The Immunogenizity Of Chloroplast-Derived 19-Kilodalton C-Terminal Merozoite Surface Antigen 1 (Msp1) Of Plasmodium Yoelii Yoelii, Sushamadevi Kamarajugadda

Electronic Theses and Dissertations

Malaria is a protozoan disease caused in humans by four different species of the genus Plasmodium (P. falciparum, P. vivax, P. ovale, P. malarie) and in rodents by Plasmodium yoelii yoelii. It has been reported that 1.5 to 3 million deaths occur worldwide due to malaria and the DALY (Daily affected life years) reports about 0.76% of world population affected by the disease in some of the major countries like Africa, Asia, Latin America etc., Due to the development of resistance to drugs by the parasite, there is an urgent need and prime importance for the development of an effective …

Expression Of Heterologous Proteins In Transgenic Tobacco Chloroplasts To Produce A Biopharmaceutical And Biopolymer, Andrew Leon Devine

Electronic Theses and Dissertations

The chloroplast has been demonstrated to be an ideal compartment to accumulate certain proteins or their biosynthetic products that would be harmful if they were accumulated in the cytoplasm. Hyper-expression of foreign proteins in chloroplast transgenics has accumulated up to 46% total soluble protein, this is possible due to the ~100 chloroplast genomes per chloroplast and ~100 chloroplasts per cell which can therefore, contain up to 10,000 copies of the transgene. Maternal gene inheritance of plastids in most crop plants results in natural gene containment. Chloroplast transformation also eliminates positional effects that are frequently observed with nuclear transformation and no …

Phospholipase A2mechanism Of Interfacial Activation,An Interdiscliplinary Approach, Kathleen N. Nemec

Electronic Theses and Dissertations

Phospholipase A2 (PLA2) is an enzyme that hydrolyzes the sn-2-ester bond of membrane phospholipids and liberates arachidonic acid, which is converted to eicosanoids that act as potent mediators of inflammation and allergy. As such this enzyme plays a crucial role in many homeostatic physiological and immunologic processes and disease progression. PLA2s undergo substantial increase in activity upon binding to cellular membranes. This effect of interfacial activation is well recognized, yet its structural and physical aspects are poorly understood. In this work, we have employed the interdisciplinary methods of molecular biology, biochemistry, biophysics, bioinformatics and computational biology, in order to elucidate …

Limnological And Landscape Factors Affecting Use Of Manufactured Ponds By The Invasive Cuban Treefrog (Osteopilus Septentrionalis), Terina Nusinov

Electronic Theses and Dissertations

Exotic amphibians are often detrimental to native biotas. In Florida, the exotic Cuban Treefrog (Osteopilus septentrionalis) eats native frogs and may outcompete them for resources. Cuban Treefrogs thrive in disturbed areas and around buildings, and often breed in manufactured wetlands such as retention ponds and borrow pits. This study identified limnological, landscape, and biotic characteristics that discouraged pond use by Cuban Treefrogs and promoted use by native amphibian species. I sampled natural and manufactured ponds in Orange County, Florida, for one year, using standard methods to estimate the species richness and relative abundance of amphibians and their potential fish and …

Dispersal Behavior Of Mosquitofish (Gambusia Holbrooki), Shireen Alemadi

Electronic Theses and Dissertations

Mosquitofish (Gambusia holbrooki) are native to the southeastern United States but invasive elsewhere, and are dominant predators in many ecosystems that they inhabit. Information on dispersal behavior will help better understand and predict mosquitofish metapopulation dynamics and invasions. I experimentally tested dispersal behavior of individual mosquitofish under a range of laboratory conditions relevant to field situations. Preliminary experiments showed that gender, lighting conditions, hunger and acclimation time did not significantly affect net dispersal rate. Power analysis based on this preliminary experiment determined that 6 replicate fish were sufficient for each subsequent experiment; I used 24 fish, and each fish was …

Is The Exotic Brazilian Pepper, Schinus Terebinthifolius, A Threat To Mangrove Ecosystems In Florida?, Melinda Donnelly

Electronic Theses and Dissertations

Mangrove ecosystems are critical to Florida, providing economic resources to humans, and untold ecological resources to estuarine organisms. In Florida's estuaries, mangrove ecosystems have suffered significant losses due to natural and human disturbances; these disturbances potentially leave mangrove communities vulnerable to invasion by the opportunistic exotic, Schinus terebinthifolius (Brazilian pepper). Prior experiments have suggested that Schinus terebinthifolius is unable to survive under marine conditions and poses no long term threat to mangrove systems. However, this contradicts field observations where Schinus terebinthifolius was found growing in the intertidal zone of Mosquito Lagoon alongside three native species of mangroves, Rhizophora mangle, Avicennia …

Predicting Risks Of Invasion Of Caulerpa Species In Florida, Christian Glardon

Electronic Theses and Dissertations

Invasions of exotic species are one of the primary causes of biodiversity loss on our planet (National Research Council 1995). In the marine environment, all habitat types including estuaries, coral reefs, mud flats, and rocky intertidal shorelines have been impacted (e.g. Bertness et al. 2001). Recently, the topic of invasive species has caught the public's attention. In particular, there is worldwide concern about the aquarium strain of the green alga Caulerpa taxifolia (Vahl) C. Agardh that was introduced to the Mediterranean Sea in 1984 from the Monaco Oceanographic Museum. Since that time, it has flourished in thousands of hectares of …

Regulation Of Apoptotic Alkalinization Through Phosphorylation Of Sodium Hydrogen Exchanger Via P38 Mitogen Activated Protein Kinase, Amy Greinier

Electronic Theses and Dissertations

Regulation of intracellular pH is responsible for many cellular processes, such as metabolism, cell cycle progression, and apoptosis. Many chemotherapeutic agents work by inducing target cells to undergo apoptosis, a cell death process still poorly understood. Previous studies demonstrated that a rise in intracellular pH activated apoptotic proteins leading to cytochrome C release. This "apoptotic alkalinization" occurred upon activation of the plasma membrane protein, sodium hydrogen exchanger-1 (NHE1), whose activity is regulated by the stress kinase p38 MAPK. In previous studies, upon cytokine withdrawal from cytokine-dependent lymphocytes induced the activity of the p38 MAP kinase which then phosphorylated the C-terminus …

Predation On The Eastern Oyster Crassostrea Virginica On Intertidal Reefs Affected By Recreational Boating, Jennifer Stiner

Electronic Theses and Dissertations

Widely regarded as a keystone species and ecosystem engineer, the eastern oyster Crassostrea virginica plays a vital role in estuarine environments. Complex, three-dimensional oyster reefs act as havens for biodiversity and contribute to ecological processes. Recently, concern for this resource has arisen in Mosquito Lagoon, Florida, the southernmost limit along the Atlantic coast for undisturbed, intertidal reefs of C. virginica. Since the 1990s, intense recreational boating activity has caused atypical dead margins (mounds of disarticulated shells) to emerge on the seaward edges of oyster reefs located along major navigational channels. Once dead margins are formed, little is known about their …