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A New View Of Ridge Segmentation And Near-Axis Volcanism At The East Pacific Rise, 8˚–12˚N, From Em300 Multibeam Bathymetry, Scott M. White, Rachel M. Haymon, S M. Carbotte Dec 2006

A New View Of Ridge Segmentation And Near-Axis Volcanism At The East Pacific Rise, 8˚–12˚N, From Em300 Multibeam Bathymetry, Scott M. White, Rachel M. Haymon, S M. Carbotte

Faculty Publications

New, high-resolution bathymetry for the East Pacific Rise between 8˚N and 12˚N was collected over a6 km wide swath centered on the ridge axis using the 30 kHz Simrad EM300 multibeam system. Thecoverage area corresponds latitudinally to the designated Ridge2000 Integrated Studies Site (ISS) for fastspreading ridges. The EM300 data, gridded at 30 m latitude by 50 m longitude, represent a greater than 4Ximprovement in horizontal resolution over previously available multibeam data and a 2X improvement indepth resolution. The new bathymetry was used to update the locations and hierarchy of ridge offsets forthis area. Among the many applications for this …


Association Between Fire Return Interval And Population Dynamics In Four California Populations Of Tecate Cypress (Cupressus Forbesii), Roland C. De Gouvenain, Ali M. Ansary Dec 2006

Association Between Fire Return Interval And Population Dynamics In Four California Populations Of Tecate Cypress (Cupressus Forbesii), Roland C. De Gouvenain, Ali M. Ansary

Faculty Publications

The Tecate cypress (Cupressus forbesii) is a tree species associated with chaparral ecosystems in southern California and northern Baja California, Mexico. It is fire-adapted, its regeneration triggered by the opening of serotinous cones when adult trees are burned. Surveys made in the 1980s by others suggested that some Tecate cypress populations were declining, and some authors suggested that increased fire frequency in southern California was a major factor for this decline. We asked whether current population trends were still negative for Tecate cypress 20 years later, and whether population growth was associated with fire return interval length. Based on demographic, …


Theory Of Cavity-Polariton Self-Trapping And Optical Strain In Polymer Chains, M. V. Katkov, Yuriy V. Pershin Dr, C. Piermarocchi Dec 2006

Theory Of Cavity-Polariton Self-Trapping And Optical Strain In Polymer Chains, M. V. Katkov, Yuriy V. Pershin Dr, C. Piermarocchi

Faculty Publications

We consider a semiconductor polymer chain coupled to a single electromagnetic mode in a cavity. The excitations of the chain have a mixed exciton-photon character and are described as polaritons. Polaritons are coupled to the lattice by the deformation potential interaction and can propagate in the chain. We find that the presence of optical excitation in the polymer induces strain on the lattice. We use a BCS variational wave function to calculate the chemical potential of the polaritons as a function of their density. We analyze first the case of a short chain with only two unit cells in order …


Eliminating Redundant And Less-Informative Rss News Articles Based On Word Similarity And A Fuzzy Equivalence Relation, Ian Garcia, Yiu-Kai D. Ng Nov 2006

Eliminating Redundant And Less-Informative Rss News Articles Based On Word Similarity And A Fuzzy Equivalence Relation, Ian Garcia, Yiu-Kai D. Ng

Faculty Publications

The Internet has marked this era as the information age. There is no precedent in the amazing amount of information, especially network news, that can be accessed by Internet users these days. As a result, the problem of seeking information in online news articles is not the lack of them but being overwhelmed by them. This brings huge challenges in processing online news feeds, e.g., how to determine which news article is important, how to determine the quality of each news article, and how to filter irrelevant and redundant information. In this paper, we propose a method for filtering redundant …


Tetrakis(N-Ethyl-9-Oxo-4-Azonia-5-Aza-9h-Fluorene) Tetra-Μ3-Iodo-Hexa-Μ2-Iodo-Dodecaiodohexabismuthate, Meredith A. Tershany, Andrea M. Goforth, Mark D. Smith, Leroy Peterson Jr., Hans-Conrad Zur Loye Nov 2006

Tetrakis(N-Ethyl-9-Oxo-4-Azonia-5-Aza-9h-Fluorene) Tetra-Μ3-Iodo-Hexa-Μ2-Iodo-Dodecaiodohexabismuthate, Meredith A. Tershany, Andrea M. Goforth, Mark D. Smith, Leroy Peterson Jr., Hans-Conrad Zur Loye

Faculty Publications

The new iodobismuthate compound (C13H11N2O)4[Bi6I22] has been synthesized solvothermally by reacting BiI3, Zn(NO3)2·6H2O and 4,5-diazafluoren-9-one in a water/ethanol solvent mixture. The asymmetric unit of the compound contains two independent [N-ethyl-4,5-dafo]+ cations and one-half of a centrosymmetric [Bi6I22]4- anion. The average terminal Bi-I, Bi-2-I and Bi-3-I bond lengths in the anion are 2.8923 (2), 3.1403 (2) and 3.3022 (2) Å, respectively.


Subtidal Inner Shelf Currents Off Cartagena De Indias, Caribbean Coast Of Colombia, Mauro Maza, George Voulgaris, Bulusu Subrahmanyam Nov 2006

Subtidal Inner Shelf Currents Off Cartagena De Indias, Caribbean Coast Of Colombia, Mauro Maza, George Voulgaris, Bulusu Subrahmanyam

Faculty Publications

Seasonal trends in inner shelf subtidal circulation off the coast of Cartagena de Indias, Colombia, are examined through the analysis of current profiles, hydrographic, meteorological and satellite data collected from 1999 to 2002. During the dry season (December–April) the water column is well-mixed and along-shelf currents flow southwestward following the steady trade winds. In the rainy season (May –November) the water column experiences continuous events of stratification and the along-shelf currents flow northeastward, opposing the weak southwestward winds. In the dry season the along shelfcirculation is mostly driven by wind forcing, while in the rainy season, the circulation is set …


Dynamic Modeling And Statistical Analysis Of Event Times, Edsel A. Pena Nov 2006

Dynamic Modeling And Statistical Analysis Of Event Times, Edsel A. Pena

Faculty Publications

This review article provides an overview of recent work in the modeling and analysis of recurrent events arising in engineering, reliability, public health, biomedicine and other areas. Recurrent event modeling possesses unique facets making it different and more difficult to handle than single event settings. For instance, the impact of an increasing number of event occurrences needs to be taken into account, the effects of covariates should be considered, potential association among the interevent times within a unit cannot be ignored, and the effects of performed interventions after each event occurrence need to be factored in. A recent general class …


An Improved Distance Heuristic Function For Directed Software Model Checking, Eric G. Mercer, Neha Rungta Nov 2006

An Improved Distance Heuristic Function For Directed Software Model Checking, Eric G. Mercer, Neha Rungta

Faculty Publications

State exploration in directed software model checking is guided using a heuristic function to move states near errors to the front of the search queue. Distance heuristic functions rank states based on the number of transitions needed to move the current program state into an error location. Lack of calling context information causes the heuristic function to underestimate the true distance to the error; however, inlining functions at call sites in the control flow graph to capture calling context leads to an exponential growth in the computation. This paper presents a new algorithm that implicitly inlines functions at call sites …


Ordering Tendencies In The Binary Alloys Of Rh, Pd, Ir, And Pt: Density Functional Calculations, Gus L. W. Hart, Brian Kolb, Stefan Müller, David B. Botts Oct 2006

Ordering Tendencies In The Binary Alloys Of Rh, Pd, Ir, And Pt: Density Functional Calculations, Gus L. W. Hart, Brian Kolb, Stefan Müller, David B. Botts

Faculty Publications

The binary alloys of Rh, Pd, Ir, and Pt are important because of their high catalytic potential. We report in this paper that the Rh1-xIrx and Rh1-xPtx systems, long thought to phase separate at low temperatures, actually exhibit miscibility over the entire concentration and temperature range. We find low critical ordering temperatures, indicating that long-range order is unlikely to be observed experimentally. These results are compared with previous theoretical predications for the other binary alloys of Rh, Pd, Ir, and Pt and with calculations performed here on the Pt1-xIrx and Pd1-xIrx systems. We discuss these results and investigate the mechanisms …


Periodic Boundary Condition Induced Breakdown Of The Equipartition Principle And Other Kinetic Effects Of Finite Sample Size In Classical Hard-Sphere Molecular Dynamics Simulation, Randall B. Shirts, Scott R. Burt, Aaron M. Johnson Oct 2006

Periodic Boundary Condition Induced Breakdown Of The Equipartition Principle And Other Kinetic Effects Of Finite Sample Size In Classical Hard-Sphere Molecular Dynamics Simulation, Randall B. Shirts, Scott R. Burt, Aaron M. Johnson

Faculty Publications

We examine consequences of the non-Boltzmann nature of probability distributions for one-particle kinetic energy, momentum, and velocity for finite systems of classical hard spheres with constant total energy and nonidentical masses. By comparing two cases, reflecting walls (NVE or microcanonical ensemble) and periodic boundaries (NVEPG or molecular dynamics ensemble), we describe three consequences of the center-of-mass constraint in periodic boundary conditions: the equipartition theorem no longer holds for unequal masses, the ratio of the average relative velocity to the average velocity is increased by a factor of [N/(N–1)]^1/2, and the ratio of average collision energy to average kinetic energy is …


Steganalysis Embedding Percentage Determination With Learning Vector Quantization, Benjamin M. Rodriguez, Gilbert L. Peterson, Kenneth W. Bauer, Sos S. Agaian Oct 2006

Steganalysis Embedding Percentage Determination With Learning Vector Quantization, Benjamin M. Rodriguez, Gilbert L. Peterson, Kenneth W. Bauer, Sos S. Agaian

Faculty Publications

Steganography (stego) is used primarily when the very existence of a communication signal is to be kept covert. Detecting the presence of stego is a very difficult problem which is made even more difficult when the embedding technique is not known. This article presents an investigation of the process and necessary considerations inherent in the development of a new method applied for the detection of hidden data within digital images. We demonstrate the effectiveness of learning vector quantization (LVQ) as a clustering technique which assists in discerning clean or non-stego images from anomalous or stego images. This comparison is conducted …


Effects Of Gap Open And Gap Extension Penalties, Hyrum Carroll, Mark J. Clement, Perry Ridge, Quinn O. Snell Oct 2006

Effects Of Gap Open And Gap Extension Penalties, Hyrum Carroll, Mark J. Clement, Perry Ridge, Quinn O. Snell

Faculty Publications

Fundamental to multiple sequence alignment algorithms is modeling insertions and deletions (gaps). The most prevalent model is to use gap open and gap extension penalties. While gap open and gap extension penalties are well understood conceptually, their effects on multiple sequence alignment, and consequently on phylogeny scores are not as well understood. We use exhaustive phylogeny searching to explore the effects of varying the gap open and gap extension penalties for three nuclear ribosomal data sets. Particular attention is given to optimal phylogeny scores for 200 alignments of a range of gap open and gap extension penalties and their respective …


Large Grain Size Stochastic Optimization Alignment, Hyrum Carroll, Mark J. Clement, Perry Ridge, Dan Sneddon, Quinn O. Snell Oct 2006

Large Grain Size Stochastic Optimization Alignment, Hyrum Carroll, Mark J. Clement, Perry Ridge, Dan Sneddon, Quinn O. Snell

Faculty Publications

DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima problem, where suboptimal guide trees produce incorrect gap insertions. The optimization alignment approach, has been shown to be effective in combining alignment and phylogenetic search in order to avoid the problems associated with poor guide trees. The optimization alignment algorithm operates at a small grain size, aligning each tree found, wasting time producing multiple sequence alignments for suboptimal trees. This research develops and analyzes a large grain size algorithm for optimization alignment that …


Pharmacogenomics: Analyzing Snps In The Cyp2d6 Gene Using Amino Acid Properties, Wesley A. Beckstead, Mark J. Clement, Mark Ebbert, David Mcclellan, Timothy O'Connor Oct 2006

Pharmacogenomics: Analyzing Snps In The Cyp2d6 Gene Using Amino Acid Properties, Wesley A. Beckstead, Mark J. Clement, Mark Ebbert, David Mcclellan, Timothy O'Connor

Faculty Publications

Each year people suffer from complications of adverse drug reactions, but with pharmacogenomics there is hope to prevent thousands of these people from suffering or dying needlessly. The CYP2D6 gene is responsible for metabolizing a large portion of these drugs. Because of the gene’s importance, various approaches have been taken to analyze CYP2D6 and single nucleotide polymorphisms (SNPs) throughout its sequence. This study introduces a novel method to analyze the effects of SNPs on encoded protein complexes by focusing on the biochemical properties of each nonsynonymous substitution using the program TreeSAAP. We apply this technique to SNPs found in the …


A Nd Isotopic Study Of Southern Sourced Waters And Indonesian Throughflow At Intermediate Depths In The Cenozoic Indian Ocean, Ellen E. Martin, Howie Scher Sep 2006

A Nd Isotopic Study Of Southern Sourced Waters And Indonesian Throughflow At Intermediate Depths In The Cenozoic Indian Ocean, Ellen E. Martin, Howie Scher

Faculty Publications

We present Nd isotopic data for fossil fish teeth recovered from the past 40 m.y. at ODP Site 757, currentlylocated at 1650m water depth on the Ninetyeast Ridge in the Indian Ocean. Although Site 757 sits in a regionstrongly influenced by weathering inputs from the Himalayas and volcanic inputs from the Indonesian arc, the pattern of Nd isotopic variations does not appear to respond to these potential sources of Nd. Instead, secular variations correlate to changes in the composition of intermediate to deep water masses bathing thesite and circulation patterns in the Indian Ocean. From ~40 to 10 Ma, eNd …


Absorption Properties Of A Porous Organic Crystalline Apohost Formed By A Self-Assembled Bis-Urea Macrocycle, Mahender B. Dewal, Michael W. Lufaso, Andrew D. Hughes, Stevan A. Samuel, Perry J. Pellechia, Linda S. Shimizu Sep 2006

Absorption Properties Of A Porous Organic Crystalline Apohost Formed By A Self-Assembled Bis-Urea Macrocycle, Mahender B. Dewal, Michael W. Lufaso, Andrew D. Hughes, Stevan A. Samuel, Perry J. Pellechia, Linda S. Shimizu

Faculty Publications

We report herein the characterization and binding properties of a microporous crystalline host formed by the self assembly of a bis-urea macrocycle 1. Bis-urea macrocycle 1 has been designed to crystallize into stacked hollow columns. The self-assembly process is guided primarily by hydrogen bonding and aromatic stacking interactions that yield crystals of filled host 1âacetic acid (AcOH). The AcOH guests are bound in the cylindrical cavities of the crystal. The guest AcOH can be removed by heating to form a stable crystalline apohost 1. Apohost 1 displays a type I gas adsorption isotherm with CO2 that is consistent with …


Introduction: Self-Organization In Nonequilibrium Chemical Systems, Irving R. Epstein, John A. Pojman, Oliver Steinbock Sep 2006

Introduction: Self-Organization In Nonequilibrium Chemical Systems, Irving R. Epstein, John A. Pojman, Oliver Steinbock

Faculty Publications

The field of self-organization in nonequilibrium chemical systems comprises the study of dynamical phenomena in chemically reacting systems far from equilibrium. Systematic exploration of this area began with investigations of the temporal behavior of the Belousov-Zhabotinsky oscillating reaction, discovered accidentally in the former Soviet Union in the 1950s. The field soon advanced into chemical waves in excitable media and propagating fronts. With the systematic design of oscillating reactions in the 1980s and the discovery of Turing patterns in the 1990s, the scope of these studies expanded dramatically. The articles in this Focus Issue provide an overview of the development and …


Pair Production From Nuclear Collisions And Cosmic Ray Transport, John W. Norbury Sep 2006

Pair Production From Nuclear Collisions And Cosmic Ray Transport, John W. Norbury

Faculty Publications

Modern cosmic ray transport codes, that are capable of use for a variety of applications, need to include all significant atomic, nuclear and particle reactions at a variety of energies. Lepton pair production from nucleus-nucleus collisions has not been included in transport codes to date. Using the methods of Baur, Bertulani and Baron, the present report provides estimates of electron positron pair production cross sections for nuclei and energies relevant to cosmic ray transport. It is shown that the cross sections are large compared to other typical processes such as single neutron removal due to strong or electromagnetic interactions. Therefore, …


Fuzzy State Aggregation And Policy Hill Climbing For Stochastic Environments, Dean C. Wardell, Gilbert L. Peterson Sep 2006

Fuzzy State Aggregation And Policy Hill Climbing For Stochastic Environments, Dean C. Wardell, Gilbert L. Peterson

Faculty Publications

Reinforcement learning is one of the more attractive machine learning technologies, due to its unsupervised learning structure and ability to continually learn even as the operating environment changes. Additionally, by applying reinforcement learning to multiple cooperative software agents (a multi-agent system) not only allows each individual agent to learn from its own experience, but also opens up the opportunity for the individual agents to learn from the other agents in the system, thus accelerating the rate of learning. This research presents the novel use of fuzzy state aggregation, as the means of function approximation, combined with the fastest policy hill …


Fourier Spectroscopy Of Ultrashort Laser Pulses, Scott D. Bergeson, Justin Peatross Sep 2006

Fourier Spectroscopy Of Ultrashort Laser Pulses, Scott D. Bergeson, Justin Peatross

Faculty Publications

We describe a Fourier-transform spectrometer appropriate for use in an undergraduate optics laboratory. The modular design, which uses off-the-shelf equipment, is suitable for determining the spectra of ultrashort pulsed and continuous light sources. The spectrometer does not require equal step sizes for the motion of the mirror. An algorithm interpolates the phase of both a reference and an unknown light beam at equal intervals before performing the Fourier transform. The interferometer scan and the phase and spectral analysis are performed in a few seconds, making the apparatus a useful tool for teaching concepts of temporal coherence and Fourier spectroscopy.


Induction Of Characters And Finite P-Groups, Edith Adan-Bante Sep 2006

Induction Of Characters And Finite P-Groups, Edith Adan-Bante

Faculty Publications

Let G be a finite p-group, where p is an odd prime number, H be a subgroup of G and θ ∈ Irr(H) be an irreducible character of H. Assume also that | G : H | = p2. Then the character θG of G induce by θ is either a multiple of an irreducible character of G, or has at least p+1/2 distinct irreducible constituents.


Digital Roots Of Human Relations: Enabling Technologies For Family History And Genealogical Research, William A. Barrett Sep 2006

Digital Roots Of Human Relations: Enabling Technologies For Family History And Genealogical Research, William A. Barrett

Faculty Publications

Flowing out of a Computer Science research lab on the third floor of the Talmage Building is a wellspring of enabling technologies for family history and genealogical research. Here, computer science students, working under the direction of Dr. Tom Sederberg and Dr. Bill Barrett are creating software tools to help individuals with their family history research so that people everywhere can seek out their ancestors and perform vital ordinances in their behalf, as desired. These tools include visualization of an entire pedigree on a single (large) sheet of paper, the ability to automatically calculate if and how two or more …


Mesoscopic Domain Average Engineering Simulations Of Ferroelectric Perovskites Compared With Multidomain Group Theoretical Predictions, Brandon J. Keith, Dorian M. Hatch Aug 2006

Mesoscopic Domain Average Engineering Simulations Of Ferroelectric Perovskites Compared With Multidomain Group Theoretical Predictions, Brandon J. Keith, Dorian M. Hatch

Faculty Publications

Engineered, multidomain ferroelectrics are of current interest for mechatronic and optical applications. Previously [D. M. Hatch et al., J. Appl. Phys. 94, 5220 (2003)], we presented a set of tables/symmetry rules showing all possible domain average engineered multidomain structures arising from [100]-, [110]-, and [111]-ordering ferroelectric transitions from a Pm[overline 3]m perovskite structure. In this work we test those predictions against three-dimensional mesoscopic fast quench simulations under various electric/stress field combinations and find excellent agreement with multidomain group theory. These simulations use a Langevin strain-displacement/polarization evolution strategy and are important to developing processing conditions for materials with precise domain structures.


Understanding Dc-Bias Sputtered Thorium Oxide Thin Films Useful In Euv Optics, William R. Evans, Sarah C. Barton, Michael Clemens, David D. Allred Aug 2006

Understanding Dc-Bias Sputtered Thorium Oxide Thin Films Useful In Euv Optics, William R. Evans, Sarah C. Barton, Michael Clemens, David D. Allred

Faculty Publications

We use spectroscopic ellipsometry to determine the optical constants of seven thin-film ThO2 samples deposited by radio-frequency sputtering, thickness ranging between 24 and 578 nm, for the spectral range of 1.2 to 6.5. We used a hollow-cathode light source and vacuum monochromator to measure constants at 10.2 eV. None of the deposition parameters studied including DC-bias voltages successfully increased the n of (that is, densify) thoria films. The value of n at 3.0 eV is 1.86 ± 0.04. We find compelling evidence to conclude that the direct bad gap is at ~5.9 eV, clarifying the results of others, some of …


Positive Current Correlations Associated With Super-Poissonian Shot Noise, Yuanzhen Chen, Richard A. Webb Aug 2006

Positive Current Correlations Associated With Super-Poissonian Shot Noise, Yuanzhen Chen, Richard A. Webb

Faculty Publications

We report on shot noise cross spectrum measurements in a beam splitter configuration. Electrons tunneling through potential barriers are incident on a beam splitter and scattered into two separate channels. Such a partition process introduces correlations between the fluctuations of the two currents. Our work has confirmed that the generally expected negative correlations resulted from sub-Poissonian electron sources. More interestingly, positive cross correlations associated with barriers exhibiting super-Poissonian shot noise have also been observed. We have found that both positive and negative correlations can be related to the noise properties of the electron source.


Tetrakis[2-(2-Pyridyl)Pyridinium] Tetra-Μ3-Iodo-Hexa-Μ2-Iodo-Dodecaiodohexabismuthate And Bis[Tris(2,2'-Bipyridine)Ruthenium(Ii)] Di-Μ4-Iodo-Octa-Μ2-Iodo-Dodecaiodohexabismuthate, Andrea M. Goforth, Meredith A. Tershansy, Mark D. Smith, Leroy Peterson Jr., Hans-Conrad Zur Loye Aug 2006

Tetrakis[2-(2-Pyridyl)Pyridinium] Tetra-Μ3-Iodo-Hexa-Μ2-Iodo-Dodecaiodohexabismuthate And Bis[Tris(2,2'-Bipyridine)Ruthenium(Ii)] Di-Μ4-Iodo-Octa-Μ2-Iodo-Dodecaiodohexabismuthate, Andrea M. Goforth, Meredith A. Tershansy, Mark D. Smith, Leroy Peterson Jr., Hans-Conrad Zur Loye

Faculty Publications

Crystals of the title compounds were grown solvothermally in an ethanol-water solvent mixture using ruthenium triiodide, 2,2'-bipyridine and bismuth triiodide as starting materials. Tetrakis[2-(2-pyridyl)pyridinium] tetra-3-iodo-hexa-2-iodo-dodecaiodohexabismuthate, (C10H9N2)4[Bi6I22], crystallizes in the triclinic space group P and is the major reaction product. The asymmetric unit of this compound consists of half a centrosymmetric [Bi6I22]4- anion and two independent 2,2'-bipyridinium cations. The minor product of the reaction is bis[tris(2,2'-bipyridine)ruthenium(II)] di-4-iodo-octa-2-iodo-dodecaiodohexabismuthate, [Ru(C10H8N2)3] …


Self-Assembled Composite Nano-/Micronecklaces With Sio2 Beads In Boron Strings, Hai Ni, Xiaodong Li Jul 2006

Self-Assembled Composite Nano-/Micronecklaces With Sio2 Beads In Boron Strings, Hai Ni, Xiaodong Li

Faculty Publications

Nano-/micronecklaces with SiO2 beads in boron strings were synthesized by simply sublimating the desired powders in a sealed quartz tube at high temperature. The boron strings have a rectangular cross section with width varying from 80to1000nm while the SiO2 beads bear either spindle or spherical shape with a size ranging from 100nmto5μm. The spacing between the SiO2 beads is uniform in each boron string. Both the boron strings and the SiO2 beads are amorphous and free of defects. The supersaturated vapors of silicon and oxygen induced the SiO2 bead formation.


A Constructive Incremental Learning Algorithm For Binary Classification Tasks, Christophe G. Giraud-Carrier, Tony R. Martinez Jul 2006

A Constructive Incremental Learning Algorithm For Binary Classification Tasks, Christophe G. Giraud-Carrier, Tony R. Martinez

Faculty Publications

This paper presents i-AA1*, a constructive, incremental learning algorithm for a special class of weightless, self-organizing networks. In i-AA1*, learning consists of adapting the nodes’ functions and the network’s overall topology as each new training pattern is presented. Provided the training data is consistent, computational complexity is low and prior factual knowledge may be used to “prime” the network and improve its predictive accuracy. Empirical generalization results on both toy problems and more realistic tasks demonstrate promise.


The Effect Of Protein Dielectric Coefficient On The Ionic Selectivity Of A Calcium Channel, Douglas Henderson, Dezso Boda, Monika Valisko, Bob Eisenberg, Wolfgang Nonner, Dirk Gillespie Jul 2006

The Effect Of Protein Dielectric Coefficient On The Ionic Selectivity Of A Calcium Channel, Douglas Henderson, Dezso Boda, Monika Valisko, Bob Eisenberg, Wolfgang Nonner, Dirk Gillespie

Faculty Publications

Calcium-selective ion channels are known to have carboxylate-rich selectivity filters, a common motif that is primarily responsible for their high Ca2+ affinity. Different Ca2+ affinities ranging from micromolar (the L-type Ca channel) to millimolar (the ryanodine receptor channel) are closely related to the different physiological functions of these channels. To understand the physical mechanism for this range of affinities given similar amino acids in their selectivity filters, we use grand canonical Monte Carlo simulations to assess the binding of monovalent and divalent ions in the selectivity filter of a model Ca channel. We use a reduced model where the electrolyte …


Particle Swarm Optimization In Dynamic Pricing, Christopher K. Monson, Patrick B. Mullen, Kevin Seppi, Sean C. Warnick Jul 2006

Particle Swarm Optimization In Dynamic Pricing, Christopher K. Monson, Patrick B. Mullen, Kevin Seppi, Sean C. Warnick

Faculty Publications

Dynamic pricing is a real-time machine learning problem with scarce prior data and a concrete learning cost. While the Kalman Filter can be employed to track hidden demand parameters and extensions to it can facilitate exploration for faster learning, the exploratory nature of Particle Swarm Optimization makes it a natural choice for the dynamic pricing problem. We compare both the Kalman Filter and existing particle swarm adaptations for dynamic and/or noisy environments with a novel approach that time-decays each particle's previous best value; this new strategy provides more graceful and effective transitions between exploitation and exploration, a necessity in the …