Digital Commons Network^™

Articulating The Importance Of Broader Relevance In Cures: From Definition To Actualization, Nikki T. Donegan

Open Access Theses & Dissertations

Course-based undergraduate research experiences (CUREs) have emerged as a means to foster student' scientific reasoning, promote positive attitudes and motivations toward research, and increase persistence in the science, technology, engineering, and mathematics (STEM) fields. In contrast to prescriptive laboratories, students enrolled in CUREs employ techniques and skills to collaboratively and iteratively address novel questions of broad relevance to audiences beyond the scope of the course itself. While many of the core components of CUREs are perceived to be relatively straightforward, definitionally-speaking, this latter dimension of broader relevance has, in contrast, remained largely ill-defined. In the series of studies presented herein, …

Understanding Climate Change: Communicating Topics On Climate Change To Non-Experts, Michaela K. Plagwitz

Honors Capstones

Climate change is an increasingly prevalent phenomenon in recent years as it affects every corner of the world. However, there is a gap of understanding between scientists and non-experts. Some non-experts are unsure if climate change affects local areas, and whether they can do anything to help mitigate it. Of course, climate change indeed affects every environment, even urban areas, and small actions are helpful in the overall mitigation of climate change. Therefore, this project was created in order to teach this information to non-experts. In order to do so, a target demographic was chosen, and an initial survey was …

Fungal Physiological Response To Temperature And Nitrogen Availability, Shana Whitney

Master's Theses and Capstones

Microbial carbon use efficiency (CUE; the proportion of assimilated C allocated towards biomass production) is a powerful regulator of global soil C stocks, and there is a need to integrate accurate and dynamic CUE parameters into C-cycling models. However, there is uncertainty in the CUE-response to warming and increased N deposition and how this response may vary among groups of microbes. Here, we conducted a laboratory incubation of ten photogenically diverse fungal isolates grown in liquid culture to evaluate potential environmental and physiological controls over CUE. Isolates were grown at 15ºC or 25ºC and under low or high N concentrations. …

Investigating Limitations To Nitrogen Fixation By Leguminous Cover Crops In South Texas, Stephanie L. Kasper

Theses and Dissertations

Many farms use leguminous cover crops as a nutrient management strategy to reduce their need for nitrogen fertilizer. Biological nitrogen fixation (BNF) depends on a symbiotic relationship between legumes and nitrogen-fixing rhizobia. Under certain conditions despite inoculation with appropriate rhizobial strains, this symbiosis fails to form. Such failure was observed in a 14-acre winter cover crop trial in the Rio Grande Valley of Texas when three legume species (forage pea, crimson clover, and hairy vetch) produced no signs of nodulation and nitrogen fixation. This study examined nitrogen, phosphorus, moisture, micronutrients and biotic interference as potential causes for the failure and …

Effects Of Elevated Temperature On Gonadal Functions, Cellular Apoptosis, And Oxidative Stress In Atlantic Sea Urchin (Arbacia Punctulata), Jackson B. Johnstone

Theses and Dissertations

Increasing surface sea water temperatures effect on growth, reproduction and development in marine organisms. Sea urchins are excellent indicator species and ideal model organisms to focus on. In this study, I tested the effect of higher temperatures on reproductive functions, heat shock protein (HSP, a chaperone protein produced by cells in response to heat stress) and nitrotyrosine protein (NTP, an indicator of reactive nitrogen species, RNS) expressions, cellular apoptosis, and ceolomic fluid (CF, a body fluid which regulates important physiological processes) conditions in Atlantic sea urchin at three different temperatures. Ten sea urchins were placed in each of six aquariums …

Social Influences On Vocal Development In A Wild Parrot, Caleb Michael Mand Arellano

Theses and Dissertations

The Social Intelligence Hypothesis (SIH) proposes that navigating complex societies requires increased neural processing to monitor shifting relationships. SIH evolutionary focus of brain size variation in adults originally ignored the developmental frameworks leading to increased sociality. I studied the ontogeny of early sibling interactions in wild Green‐rumped Parrotlets (Forpus passerinus) in a Venezuelan population that exhibited large variation in brood size and engaged in elaborate social interactions and complex social learning during nestling development. To test if nests of varying brood sizes exhibit differences in social complexity, I quantified the number and strength of sibling play partnerships, as a proxy …

Object Enhancement, Noise Reduction, Conversion And Collection Of Spatiotemporal Image Data, Michael Izaguirre Jr.

Theses and Dissertations

In this report, a variety of cellular dynamics are enhanced and analyzed utilizing various algorithms and filter for contrast enhancement. This report will also illustrate the underlying complexities of processing compressed data received from certain type of sensors, their default applications, various methods in converting compressed data to compatible universal uncompressed formats allowed in scientific applications, various methods of image and video capture, guidelines in ethical image manipulation, various methods of frame extraction, and analyzing/processing video images. These methods and processes purposely utilize freeware and public domain software to lower the cost of reproducibility for all.

A Snapshot Of The Age, Growth, And Reproductive Status Of Gray Triggerfish (Balistes Capriscus, Gmelin 1789) On Three Artificial Reefs In The Northwest Gulf Of Mexico, Adam M. Lee

Theses and Dissertations

Age, growth, and reproductive status of gray triggerfish (Balistes capriscus) were identified from 2015-2016 on artificial reefs in the northwest Gulf of Mexico. Individuals ranged from 232-432 mm fork length with and a mean fork length of 319 mm. Individuals from age 0.2 to 5.2 yrs were observed with a weight to length relationship of Wg = 1.1 x -104 x FL2.7 (r2 = 0.94, n = 112), where FL = fork length (mm) and Wg = weight (g). A von Bertalanffy growth equation of Lt = 326(1 - e - 0.9 (t + 1.71)) was calculated irrespective …

The Snail Communities Of The Lower Rio Grande Valley, Briante Shevon Lewis Najev

Theses and Dissertations

The lower Rio Grande Valley are three lowest latitudinal counties of south Texas. This unique, subtropical, semi-arid environment has the last remaining Tamaulipan Thornforest in the USA. The Tamaulipan Thornforest of Texas occupies less than 2% of their former range. Before this habitat possibly dwindles even more there has been a comprehensive survey of terrestrial snails in intact, altered, and urban areas of the valley.

We have found a 16397 of snails in intact sites with a high species richness at 17; followed by altered sites with an abundance of 12143 snails and a species richness of 15. There were …

High-Powered Led Assembly As Replacement For Conventional Hbo Lamps In High Resolution, High Magnification Microscopy System, Christian Y. Miranda Solis

Theses and Dissertations

Through decades, fluorescence microscopy has relied on mercury vapor lamps as its main light source due to their high power, broad spectrum, and bright bands generated. The use of mercury vapor lamps has remained fundamentally associated with the required lighting equipment of research laboratories. However, as time progresses, mercury vapor lamps have been slowly replaced with technologies that offered longer lifetimes, less hazardous waste, and output light at similar intensities. LED technology has been actively used in biological research, but was limited by price, lower intensities, and stability. The recent development of LED technology has allowed for further understanding and …

Effects Of Global Warming On Gonadal Functions, Cellular Apoptosis, And Oxidative Stress In The American Oyster, Sarah B. Nash

Theses and Dissertations

Global warming due to climate change is predicted to intensify the heat stress in marine and coastal organisms, affecting their development, growth and reproductive functions. In this study. I analyzed gonadal development, heat shock protein 70 (HSP70), nitrotyrosine protein (NTP), dinitrophenyl (DNP) expressions, cellular apoptosis, and coelomic fluid (CF) conditions in American oyster. Oysters were placed in six aquariums and exposed to control (24°C), medium (28°C), and high (32°C) temperatures for one week. Higher temperature significantly decreased the number of eggs and sperm. CF protein concentrations also declined compared to control. In contrast, CF pH and HSP70 expression in gonad …

Comparative, Lithology-Based Biogeography Of Phreatophytic And Non-Phreatophytic Matrices Along A North-South Gradient Of The South Texas Sand Sheet, Christopher Joaquin Munoz

Theses and Dissertations

A 70km-long, N-S stratigraphic cross-section spanning the entirety of the South Texas Sand Sheet (STSS) has been rendered along Texas Interstate 69C. The cross-section indicates localized zones of substantial STSS thickness (>4m) as well as zones where the underlying Goliad Formation is either exposed or just below the surface (<0.5m). Spatial patterns of both phreatophytic and non-phreatophytic vegetation assemblages were analyzed by means of remote sensing and in situ herbaceous species evaluations. Biogeographic patterns were comprised of three vegetation matrices: P. glandulosa-dominated, Q. virginiana-dominated and a matrix of herbaceous plants. The geographic distribution of vegetation assemblages corresponded to specific lithological parameters and features. Namely, Q. virginiana concentration exhibited a positive linear relationship with the lithological parameter of STSS thickness (P =2.122x10-11) (α = 0.05). P. glandulosa/V. farnesiana …

Investigating The Efficacy Of Jak2/Stat3 And Pi3k/Mtor Inhibitory Therapy On Glioblastoma And Basal Breast Cancer Cell Lines, Neftali Vazquez

Theses and Dissertations

The JAK2/STAT3 and PI3K/mTOR pathways are upregulated in cancer cells. STAT3 promotes a positive feedback loop for the stem program whereas PI3K inhibits FOXOs tumor suppressor role and mTOR promotes tumorigenic advancement. Particularly GBM and BBC are aggressive cancers that have a stem cell population that makes them difficult to treat and metastatic. We investigate the effects of a combination therapy that inhibits JAK2/STAT3 and PI3K/mTOR output aiming to lower stem cell expression and promote apoptosis. Our collected data indicates that the dual inhibition induced apoptosis, but it also increased the stem cell signature. The findings pave way for the …

Studies On Regulation Of Dihydrotestosterone Binding To And Releasing From The Androgen Receptor, Tahyra M. Resto Santos

Theses and Dissertations

The androgen receptor (AR) is a nuclear receptor that responds to testosterone and 5α-dihydrotestosterone (DHT) by modulating gene expression in a variety of cells, including prostate and muscle tissues. Studies of small molecule interaction with AR have shown diphenyl compounds inhibiting through a binding site labeled Binding Function 3 (BF3). The goal of this research is to analyze the interaction of the BF3 site with DDT and related compounds. Amino acids that are exposed on the surface of the BF3 that might interact with different compounds were mutated. Mutant proteins were tested experimentally for their impact on the inhibition the …

Integrative Molecular Pathological Epidemiology Of Congenital And Infant Acute Leukemia, Heather Elizabeth Williams

Health Sciences Program Student Theses, Dissertations and Capstones

Congenital and infant acute leukemia remain one of the most puzzling clinical issues in pediatric hematology-oncology. There is a paucity of studies focused on these rare, aggressive, acute leukemias; specifically, there is little study on the differences in disease in the youngest of infants less than 1 year of age unlike the numerous studies of the disease in older children. The United States National Cancer Institute’s Surveillance, Epidemiology, and End Results (SEER) cancer population registry program has been integral for a plethora of clinical population and pathology research studies for numerous diseases in the last 40 years and has an …

Molecular Mechanism Of Neurodegeneration Induced By 4-Nonylphenol, Michelle Alejandra Aranda

Open Access Theses & Dissertations

Neurodegeneration, a progressive loss of nerve cells, occurs in many neurological disorders, including Alzheimer's disease (AD) and Parkinson's diseases (PD), as well as in dementia. The pathogenesis of these diseases is unknown, and recent evidence suggests that environmental factors, which act as endocrine-disrupting compounds (EDCs) could play a significant role in developing the disease process. 4-Nonylphenol (4-NP), an EDC, and a ubiquitous environmental toxin has been shown to affect brain development and may cause neurodegeneration. 4-NP is produced in large quantities in the U.S. and used as raw materials for making detergents, pesticides, plastics, paints, cosmetics, rubber, and other industrial/household …

Impacts Of Habitat Attributes And Community Gardens On Urban Bird Communities, Samuel Glenn Ortiz

Theses and Dissertations

The Rio Grande Valley of Southern Texas is a major agricultural region yet has some of the highest hunger rates in the USA. Urbanization and agriculture affect biodiversity, which is well studied, but little is known about how agriculture affects biodiversity in urban areas. We investigated how different urban attributes, including those related to urban farming, impact bird communities in Brownsville and Harlingen, TX, and compared sites that have community gardens to those that do not. To study three key urban habitat characteristics, we identified sites that exhibited all possible combinations of these factors, quantified land cover classes related to …

Effects Of Invasive Nilgai Antelope (Boselaphus Tragocamelus ) Browsing On Black Mangrove (Avicennia Germinans) In South Texas: A Study On Microenvironmental, Physiological, Structural, And Reproductive Parameters, Tianna Picquet

Theses and Dissertations

Mangroves are important for coastal systems because they provide habitat for fish and bird species, mitigate erosion, and create an area for carbon sequestration. Along the Gulf of Mexico, at the southern tip of Texas, recent observations have shown that A. germinans stands (the dominant species in Texas) are being browsed on by invasive nilgai antelope (Boselaphus tragocamelus). The antelope were introduce to the south Texas region via King Ranch in the 1930’s and have since significantly increased in population and distribution. Previously thought to be grazers, B. tragocamelus were captured on camera utilizing A. germinans as a …

Aligning Anatomical Knee Model With Kinematic Experimental Data To Investigate Squat Exercise, Jose Mario Salinas

Theses and Dissertations

A two-dimensional inverse dynamics anatomical model of the human knee was developed by aligning anatomical structures of the knee (taken from x-rays) with kinematic experimental data (collected from motion capture cameras). The mathematical model was used to study the forces related to the tibiofemoral and patellofemoral joints during the squat and knee extension exercises. Forces calculated by the model included: tibiofemoral contact force, patellofemoral contact force, forces generated by cruciate ligaments, quadriceps force, and patellar tendon force. Bone alignment consisted of superimposing the geometric center of the lateral femoral condyle (from x-rays) with the relative instantaneous center of rotation of …

Local Delivery Of Mesenchymal Stem Cells Expressing Osteogenesis-Inducing Microrna For Bone Tissue Engineering Applications, Marco Antonio Arriaga

Theses and Dissertations

Bone is capable of regenerating autonomously when the injury is small (< 2.5 cm), however, large (> 2.5 cm) or insufficiently vascularized defects require intervention to repair. The overall goal of this project is to contribute towards the development of novel strategies to aid bone tissue regeneration by delivering mesenchymal stem cells expressing microRNAs that induce expression of the runt-related transcription factor 2 (RUNX2). It was determined that porous polycaprolactone (PCL) scaffolds fabricated to have a higher surface area to volume ratio (SVR) (> 80) compared to lower SVR (< 80) were hydrolyzed at a higher rate. Scaffolds fabricated with 80 vol. %/300–500 µm porogen were optimal for cell colonization as higher absorbance of metabolized MTT was detected compared to other scaffold types. From the subset of 5 miRNAs tested, miRNA-26a, miRNA-196 and miRNA-218 demonstrated higher upregulation of RUNX2 gene expression and calcium mineralization and thus, are promising candidates for bone tissue regeneration.

Assessing The Grey Short-Tailed Opossum (Monodelphis Domestica) As A Potential Animal Model Of Autism Spectrum Disorder: Creation Of An Ethogram And Description Of Developmental Changes In Social Behavior, Angela M. Mar

Theses and Dissertations

Research using animal models is done when human subjects cannot participate due to ethical concerns. The majority of translational research is done using rat models. However, other animals are good candidates for translational research, such as Monodelphis domestica. Presently, little is known about Monodelphis domesticas’ behavior and how the animal can be used in research settings. The aim of the study is to fill the gap in the research by conducting behavioral observations of M. domestica pups using a longitudinal approach starting with post-weaned age and ending at the age of sexual maturity and creating an behavioral ethogram. …

A Phylogenetic Analysis Of Leptogorgia Virgulata And Leptogorgia Hebes In The Northwestern Gulf Of Mexico, Samantha Silvestri

Theses and Dissertations

The use of genetics in recent years has brought to light the need to reevaluate the classification of many gorgonian octocorals. In 2017, Poliseno et al. conducted a comprehensive, phylogenetic study of the genus Leptogorgia and found that it, too, was in need of taxonomic revision. To expand on their study, 25 samples representing two Leptogorgia species—L virgulata and L. hebes —from the northwestern Gulf of Mexico (GOM) were examined. Ten novel, complete mitochondrial genomes were sequenced using Next Generation sequencing and 24 novel mtMutS sequences were obtained from both species. The phylogenies reconstructed from these sequences indicate the …

Arabidopsis Thaliana Transformed With Streptanthus Farnsworthianus Metal Tolerance Protein 1 (Sfmtp1) Or The Native A. Thaliana Metal Tolerance Protein 1 ( Atmtp1) Cdna And The Effects On Sod Enzyme Activity Upon Nickel Treatment, Selina Urbina Fernandez

Theses and Dissertations

Superoxide Dismutase enzyme activity was analyzed in transgenic Arabidopsis thaliana, a non-accumulator weed plant species of the Brassicaceae family, that was transformed with Streptanthus farnsworthianus Metal Tolerance Protein1 (SfMTP1) or A. thaliana Metal Tolerance Protein 1 (AtMTP1 ). The transgenic A. thaliana was exposed to a 12 day treatment of 100 ?M Nickel Acetate in 1/10 X Hoaglands solution in hydroponics. Analysis of Super Oxide Dismutase activity determined that transgenic A. thaliana transformed with the AtMTP1 cDNA and treated with 100 µM Nickel showed a significant increase in Super Oxide Dismutase activity compared to A. thaliana …

Co-Infection Of Zika And Dengue Virus In Aedes Aegypti And Aedes Albopictus Mosquitoes, Felicia Vazquez

Theses and Dissertations

The term co-infection describes an event when multiple pathogens infect a single host. For vector-borne diseases, a vector may become co-infected by feeding either on a single host that has multiple pathogens or feeding multiple hosts, each of which may be infected. Co-infection in non-vector hosts has been shown to influence immune response and eventual outcome of disease, and is likely to have a similar impact on vector species. With multiple vector-borne diseases circulating in South Texas, the potential for co-infection exists. We examined when mosquitoes are infected with one virus and subsequently infected with another. We hypothesized that the …

Environmental Conditions In San Martin Lake: Effects Of Eutrophication In An Estuary Associated With The Laguna Madre, Wendy L. Rogers

Theses and Dissertations

San Martin Lake is a shallow water Estuary in the lower Laguna Madre off the Port of Brownsville Shipping channel. It is influenced both by incoming tides and waste water runoff both from local farms and the Brownsville water treatment plants. The resulting mixture of eutrophic water and incoming sea water creates the perfect mix for a potential algal bloom. This study looks at the nutrient levels and environmental conditions in the main basin of the estuary to establish baseline levels and to observe the rate of nutrient clearing being accomplished in this environment. As sport recreation in the area …

Survey Assessment Of Community Knowledge And Prevention Of Chagas Disease And Its Vector In Hidalgo And Cameron Counties, Adam Dennis Wiejaczka

Theses and Dissertations

Chagas disease, caused by the parasite Trypanosoma cruzi, kills thousands of people annually and is the dominant cause of infectious myocarditis worldwide. Kissing bugs are vectors that carry T. cruzi . and are found in the Lower Rio Grande Valley (LRGV). There is no vaccination nor cure for Chagas. The best mechanism of prevention is to control vector infestations. Little research is available regarding the level of understanding local communities have about Chagas.

Our goal was to test the knowledge of several communities in the LRGV on Chagas disease. Our hypothesis states that local communities do not have sufficient …

Embryology And Wing Development In A Dragonfly (Tramea Onusta), Valeria M. Casas

Theses and Dissertations

Most phylogenetic research within the insect phylogeny is focused on higher order taxons. Therefore, to better understand insect wing and flight origin, genetic studies on more primitive insect orders is necessary. Odonata, the order including dragonflies, is one of the earliest insect taxa to develop wings. Hox genes are highly conserved regulatory genes involved in embryonic development of organisms. Hox gene expression studies in insects allow improved insight of body plan development including wings. Embryonic development of dragonfly, Tramea onusta, was analyzed at various developmental stages. Developmental genes Antennapedia, Distal-less, Ultrabithorax, abdominal-A, Abdominal-B, engrailed, Cadual, engrailed 2, Wingless, nubbin, …

Nannochloris Sp. And Oocystis Sp. Algae Exposed To Osmotic Stress For Increased Lipid Production For Use In Biofuels, Laura M. Chavez

Theses and Dissertations

Algal biofuel research is important due to the potential need for replacement of non-renewable fossil fuels and a changing global climate. Under stress, algal cells tend to increase neutral lipid production, which are a suitable source for biofuels. The goal of this study was to subject Nannochloris sp.. and Oocystis sp. algal cells to osmotic stress by modifying sucrose and salinity levels in different treatment medias.

The treatment containing the lowest salinity (15 ppt) and no sucrose yielded the highest lipid fluorescence/cell in Nannochloris sp.. cells (0.00142 ± 0.00044) on day 2 while the treatment containing highest salinity (35ppt) …

Characterizing Polychlorinated Biphenyl Degradation Potential In Surface Water Bacteria From Rio Grande Valley, Texas Reservoirs, Alisha M. Janiga

Theses and Dissertations

The Donna Reservoir in Donna, Texas is contaminated with polychlorinated biphenyl (PCB) pollution. This reviews the current understanding of PCBs and investigate the potential of PCB degradation by native bacteria communities in the Donna Reservoir. The metabolic diversity, biphenyl tolerance, bphA1 presence were tested on surface water samples from the Donna Reservoir. The Ecoplate data suggest that the communities have a diverse metabolic capacity and the degree of plant life may interact with carbon type metabolism but not the rate of growth. Biphenyl growth curves showed that all the samples from the Donna Reservoir are tolerant to the average PCB …

Questing Activity Of Cattle Fever Tick Larvae, Rhipicephalus (Boophilus) Microplus (Acari: Ixodidae): Environmental Influences And Implications For Control In South Texas, Brenda Leal

Theses and Dissertations

Questing ticks ascend stems, leaves, or rocks, extend their front legs, and wait poised for attachment to a passing host. Ixodid ticks have four developmental stages. Because ticks detach and molt between stages most ticks require three separate hosts to complete their lifecycle. Three-host ticks quest for a new host between each stage, whereas a few specialist tick species remain on and thus require only a single host. These one-host ticks only quest for hosts as larvae. As much as 90% of the life cycle may consist of questing when hosts are scarce. Most of the literature on questing relates …