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Ammonium Chemotaxis In Chlamydomonas Reinhardtii, Gabela Nelson

LSU Doctoral Dissertations

Analysis of ammonium chemotaxis in Chlamydomonas reinhardtii is largely hindered, compared to that of phototaxis, despite equal importance on flagellated microalgal physiology. A major contribution of this shortfall is the lack of proper assay method. We developed a simple Petri dish assay method in which light is homogenously exposed while patterns of the cellular migration are tracked with a function of time. Using the method, new findings were revealed. First, this research presented that a strain lacking the eyespot organelle required for light gradient-sensing exhibits similar chemotactic behavior compared to a wild-type strain, suggesting Chlamydomonas sense an ammonium gradient not …

Drivers Of Intertidal Purple Sea Urchin (Strongylocentrotus Purpuratus) Reproductive Capacity Along The Central Coast Of California And Implications For Kelp Forest Recovery, Isaak Haberman

Capstone Projects and Master's Theses

Kelp forests are integrally important ecosystems along eastern Pacific coastlines, sequestering carbon, reducing wave erosion, and increasing biodiversity in coastal marine communities. However, kelp forest coverage in central California has experienced major decline in the past decade, being replaced with unproductive urchin barren habitats. The factors affecting the establishment and persistence of urchin barrens have been extensively researched in the subtidal, but the influence of intertidal sea urchin populations is unknown. Moreover, intertidal populations are likely connected to subtidal communities via larval dispersal, so an understanding of intertidal urchin reproductive dynamics is important. I collected urchins and biological and environmental …

The Nature And Extent Of Algal Symbiosis In Three North American Ranids, Zachary T. Vegso

Cal Poly Humboldt theses and projects

The symbiotic relationship between the chlamydomonad green alga Oophila amblystomatis and embryos of certain amphibian species is often presumed to be mutualistic. However, the existence of a mutualism has only been experimentally tested and established in two closely related ambystomatid salamanders. These experiments showed a positive correlation between intracapsular algal density and embryonic growth, survival, hatching synchrony, and hatchling body size. Oophila has been documented within egg capsules of a growing number of amphibian species, including several frogs in the family Ranidae. However, the nature and extent of this relationship remains unclear. Ranid eggs are better oxygenated than ambystomatid eggs, …

C. Compactum Acts As A Comprehensive Climate Archive And Ecological Foundation In The Labrador Sea, Sadie Heckman

CMC Senior Theses

Clathromorphum compactum, a species of crustose coralline algae (CCA), is incredibly valuable for the future of high latitude ocean health, both as a comprehensive archive of changing ocean conditions, and ecologically as a foundational species for promoting biodiversity. Previous work establishes C. compactum as an effective climate proxy, and its life history provides several advantages for this use. C. compactum grow in nongeniculate, generally radial formations on hard substrates, over a wide distribution in mid-to-high latitude oceans and at subtidal depth ranges. Indeterminate growth leads to extreme longevity in C. compactum (Halfar et al., 2008), and growth rates are relatively …

Quantifying Wastewater Contributions To The Upper Clark Fork River, Claire Utzman

Graduate Student Theses, Dissertations, & Professional Papers

Though algae are at the base of food webs in many rivers, large algal blooms are increasing in frequency and can cause problems with nutrient cycling, depletion of oxygen supplies at night, and release of toxic chemicals. One leading cause of algal blooms is nutrient loading into rivers, and controlling nutrient release in wastewater is one approach that can help limit algal growth. To reduce the intensity of algal blooms in the Clark Fork River in western Montana, numeric nutrient standards were put in place that regulated the release of the nutrients nitrogen and phosphorus into the river from wastewater. …

Biological Seawater Desalination Using Green Algae And Cyanobacteria, Abdul Mannan Zafar

Dissertations

Water shortage in many coastal parts of the world is reaching alarming situation, including the United Arab Emirates. Urbanization and rapid population growth are generating critical water demands with an increase in per capita consumption. Seawater is usually treated by membrane processes such as Reverse Osmosis (RO). However, this technology is energy intensive and generates excessive brine as a waste. The solution to this problem can be found in natural remediation techniques that can reduce salt concentration from seawater, such as halophytes. A salt-tolerant species can consume Na⁺ and Cl^- ions and increase cellular growth which is termed …

Advances In Phaeodactylum Tricornutum Nuclear Engineering, Mark Pampuch

Electronic Thesis and Dissertation Repository

The marine diatom Phaeodactylum tricornutum has the potential to become an excellent platform for the sustainable production of valuable compounds and pharmaceuticals, but currently large-scale engineering of this organism remains a challenge due factors like inefficient genetic transformation protocols and a lack of accurate genomic data. This thesis addresses these two bottlenecks by (i) optimizing an electroporation protocol to P. tricornutum and (ii) remapping genomic data from a scaffolded genome assembly to a telomere-to-telomere genome assembly. An optimized transformation protocol was developed that could consistently transform blunt-ended and DNA with overhangs and yielded up to 1000+ colony forming units per …

Diversity, Function, And Phenotypic Plasticity Of Cryptophyte Phycobiliproteins, Kristiaän Merritt

Theses and Dissertations

Cryptophytes are a group of unicellular eukaryotic algae that can be found in a wide range of underwater habitats. Part of their ecological success can be attributed to their diverse array of cryptophyte phycobiliproteins (Cr-PBPs), a pigment class that captures wavelengths of light that are poorly absorbed by chlorophylls. Cryptophytes gained photosynthesis via secondary endosymbiosis in which their ancestor engulfed a red algal endosymbiont. Following endosymbiosis, they deconstructed the red algal photosynthetic machinery to form the Cr-PBP. Since then, the Cr-PBPs have diversified into at least 9 spectrally distinct forms. I investigated the diversity of Cr-PBP light absorption across 76 …

Anticoagulant And Anti-Sars-Cov-2 Effects Of Botryocladia Occidentalis Sulfated Glycans, Reena Thara

Honors Theses

Marine algal species are composed of various macromolecules endowed with potential biological actions, such as carbohydrates. Sugars are complex in nature with a multitude of monosaccharides constructed into polymers. We call complex carbohydrate polysaccharides those of great structural variation. The sulfation pattern adds to their complexity, creating scientific interest in the aquatic organisms from which these molecules can be extracted. Sulfated polysaccharides are now increasingly studied for their potential biological properties as anticoagulants and as antivirals. Heparin is a naturally occurring sugar in the human body that is necessary for proper anticoagulation. Many people today suffer from a dysfunctional coagulation …

Astrobiological Analogs: Exploring The Microbial Ecology Of Cryptic Cryosphere Habitats, Caleb Garry Schuler

Doctoral Dissertations

Microbiology of cryosphere systems are understudied and at risk as Earth’s climate continues to change. These systems are often at extreme boundaries to what microbial life can withstand and as such require adaptations that enable life to survive and thrive in some of Earth’s harshest conditions. The microorganisms in these environments may play a large yet not fully understood role in the global carbon budget. In order to understand the microbiology of these systems, their bioprospecting potential, and their role in global biogeochemical cycles, it is imperative to gain access to and study these parts of the cryosphere before they …

The Effect Of Algal Wastewater Treatment Systems On Microbial Communities, Alexis Leach

University Honors Program Senior Projects

In collaboration with the Metropolitan Water Reclamation District of Greater Chicago and Gross-Wen Technologies, I examined the microbial communities in experimental tertiary wastewater treatment systems employing algal phytoremediation. Three algal phytoremediation systems were examined: two vertical conveyor belt systems, known as the 10-foot belt system and the series 4 system, and a third system lacking a converter belt in which planktonic algae grew in a control pond. I used EcoPlates to measure carbon substrate utilization by microorganisms in each system. EcoPlates contain thirty-one different carbon substrates, with a dye that indicates microbial use of each substrate. I conducted a Principal …

Ecology, Evolution, And Gene Transfer Between Diatoms And Bacteria, Cory B. Gargas

Graduate Theses and Dissertations

Although photosynthetic macro-eukaryotes (i.e., plants) make up the majority of organic biomass on earth, bacteria are the second largest taxonomic group, by biomass. Bacteria are ubiquitous in our environment, living on, and within, man-made surfaces, natural environments, and eukaryotes themselves. The relationship between bacteria and eukaryotes has existed from the very beginning of eukaryotic life in the form of bacterial endosymbioses that resulted in mitochondria and plastids. Other eukaryote–bacteria relationships have evolved since then, ranging from the beneficial (e.g., mutualistic) to harmful (e.g., parasitic or pathogenic). Understanding these eukaryote–bacteria relationships is key to understanding both the evolution of important ecosystem …

Formulation And Optimization Of Algae-Filled Polylactic Acid Thermoplastic Compounds For Improved Biodegradation, Sydney A. Cole

Honors Theses

Conventional plastics derived from non-renewable petrochemicals – especially from fossil reserves – have become an integral part of human life because their structure can be chemically manipulated to obtain a wide range of properties and geometries necessary in nearly all industries. The volume and rate at which petroleum plastics are produced, used, and discarded has incited several significant issues related to human health, environmental conservation, and ecological biodiversity. To address these issues, many institutions have begun investigating solutions in both the development and end-oflife phases of plastic production and waste. In this thesis, a Chlorella-dominated algae mixture is dried and …

Evaluating The Potential Use Of Saltwater Quarries In The Florida Keys For The Semi-Wild Mariculture Of Caribbean King Crab (Maguimithrax Spinosissimus), Samantha Glover

Biological Sciences Theses & Dissertations

Coral reef degradation, resulting from anthropogenic factors and natural change, has resulted in drastically reduced coral cover causing a phase shift from coral-dominated to macroalgae-dominated reefs, especially in the Caribbean. An important contributor to this shift is the loss of herbivores due to overfishing and the disease-related reduction of the long-spined sea urchin (Diadema antillarum) population during the 1980s. However, recent studies conducted in the Florida Keys have shown that increasing the abundance of herbivorous, native Caribbean king crabs (Maguimithrax spinosissimus) on reefs, can reduce the cover of nuisance algae and improve coral recruitment. Maguimithrax spinosissimus …

Genetic Tools Towards A Synthetic Biology Approach For Whole Mitochondrial Genome Engineering, Ryan R. Cochrane

Electronic Thesis and Dissertation Repository

Synthetic biology is an interdisciplinary research field that standardizes and repurposes biological components to better understand life and solve complex problems. As synthetic biology has developed, the goal has become to generate fully controllable biological systems through whole genome engineering (WGE), the cumulation of standardized genome engineering, and DNA delivery methods. In eukaryotes, genetic tools for WGE are limited to the nucleus and present a need to expand to include mitochondria, which maintains its own unique genome. The work presented here begins developing the resources needed to enable whole mitochondrial genome engineering.

First, to standardize mitochondrial genome engineering protocols, I …

The Toxicity Of Dopamine On Salish Sea Phytoplankton, Allyson Lombardo

WWU Graduate School Collection

In the Salish Sea, blooms of the intertidal macroalgae, Ulvaria obscura, are common and can achieve extraordinarily high biomass. Upon desiccation and subsequent rehydration from incoming tides, U. obscura releases dopamine. Previous studies showed that dopamine negatively affects other macroalgal species and can deter grazers. However, the effects of dopamine on co-occurring phytoplankton remains unknown. This study explored the toxicity of dopamine on four phytoplankton known to inhabit the Salish Sea: the haptophyte, Isochrysis galbana; the chlorophyte, Dunaliella tertiolecta; the dinoflagellate, Heterocapsa triquetra; and the diatom, Thalassiosira sp. Over the course of 8 days, phytoplankton growth …

Clay As A Control Technique For Karenia Brevis: Water Chemistry Dynamics And Physiological Impacts On Benthic Invertebrates, Victoria Devillier

Graduate Thesis and Dissertation 2023-2024

Clay-based compounds are globally the most advanced and widely used method of direct suppression of marine harmful algal blooms, and are currently undergoing investigation as an option to control Karenia brevis blooms in Florida. Before clay may be accepted for widespread use, there are multiple concerns and challenges that must be addressed regarding the environmental safety of this method, such as effects on water quality, the fate of toxins, and potential impacts of clay treatment to non-target organisms. To contribute to ongoing assessments of clay as a potential control method for K. brevis blooms, we conducted experiments with a formulation …

Seasonal Starch Allocation In Starry Stonewort (Nitellopsis Obtusa) Harvested From Lake Koronis, Mn, And Development Of Non-Chemical Management Recommendations, Alyssa M. Haram

All Graduate Theses, Dissertations, and Other Capstone Projects

Starry stonewort (Nitellopsis obtusa) (Desvaux in Loiseleur) J. Groves is an invasive macro alga that can take over entire water columns and outcompete native species. Previous research has quantified seasonal life history and phenology but there is no research quantifying carbohydrate allocation which was the aim for Chapter II. Management efforts to control Nitellopsis obtusa have been limited to stressing the thalli and have not been able to directly target the reproductive bulbils on larger scales. Smaller scale efforts such as the use of hand pulling can be used but hand pulling is not realistic for larger infestations. Chapter III …

Sustainability Practices In Aquaculture: Using Algae Turf Scrubber Biomass To Raise Black Soldier Flies As An Alternative Feed In Blue Tilapia, Oreochromis Aureus, Culture, Michelle C. Lowery

Electronic Theses and Dissertations

Since the 1980s, non-algal aquaculture has grown to encompass 49% of all seafood production in response to a growing human population and increased seafood demand (FAO, 2022). Hurdles exist to aquaculture sustainability, including dependence on wild sourced fishmeal (FM) and the impacts wastewater discharge. It takes 4-5 tons of wild forage fish to produce one ton of dry FM (Miles and Chapman, 2006) and as aquaculture is primarily conducted in earthen ponds and public open water bodies (FAO, 2022), finfish culture can have a high impact on the surrounding environment by discharging excess nutrients. This study used algae turf scrubber …

The Effects Of Light Intensity And Cell Structure On The Cultivation Of Arthrospira Platensis, Taylor Barnhart

Honors Theses

As scientists explore further into space, more cost-effective resources are needed for long-term space travel. An interesting solution is Arthrospira platensis, a filamentous cyanobacteria high in proteins and nutrients, and known for its helical structure. In unfavorable conditions, coiled spirulina cells become straight. Spirulina converts carbon dioxide gas into pure oxygen and the different cell structures stimulate different responses in oxygen production and cultivation. In these experiments, 2.3 L containers of pure coiled spirulina and mixed (coiled and straight) spirulina were placed into 3 incubators with different light intensities: 51µmol/m2/s, 25µmol/m2/s, 12µmol/m2/s. Each experiment length was 72 hours and the …

Differential Expression Of Photosynthetic Genes In Cryptophyte Algae (Hemiselmis Cryptochromatica Ccmp 1181), Chastity D. Aguilar

Biology Theses

Cryptophytes are a group of freshwater algae that have acquired photosynthesis through secondary endosymbiosis with a red alga and an unknown eukaryote heterotroph. Cryptophytes possess photosynthetic pigment-protein structures called phycobiliproteins (PBPs). Cryptophyte phycobiliproteins are composed of α and β-protein subunits and four chromophores (bilins). There are nine classes of cryptophyte PBPs that absorb different wavelengths of light based on the type of bilins covalently bound to the protein subunits. Three cryptophyte PBPs are phycoerythrins that give the algae a red appearance and six are phycocyanins that give the algae a blue to green appearance. Hemiselmis cryptochromatica (CCMP 1181) is a …

Nutrient Recovery From Wastewater By A Consortium Of Algae Species For Biofuel Production, Edgardo Ayala

Boise State University Theses and Dissertations

Current energy sources are predominantly petroleum-based and their use increases greenhouse gas (GHG) emissions. As the global population grows, and along with it the demand for energy, there is a need to further develop renewable energy sources to avoid the effects of increasing atmospheric CO₂ concentrations on the climate. Biofuels, a renewable energy source, have gained significant interest as a replacement for petroleum-based fuels due to their environmental benefits and carbon neutrality. Biofuels are expected to make up 9.0% of the total fuel consumption in the U.S. by 2040, up from 7.3% in 2019 [1]. Currently, terrestrial crop-based biofuels …

The Effect Of Spirulina Platensis Algae Inclusion In Feed Of Commercial Broilers Subjected To Cyclic Heat Stress, Kirsten Shafer

Graduate Theses and Dissertations

The effect of Spirulina platensis inclusion in feed of commercial broilers was evaluated over one experiment. The study aimed to investigate the effects of Spirulina platensis freshwater algae inclusion on live performance and processing characteristics of commercial broilers subjected to daily cyclic heat stress. Day old Ross 708 male broilers were placed into 8 environmentally controlled chambers. At d 21, four chambers remained on a control diet containing no algae (CON) while 4 chambers received a diet that included algae at an inclusion rate of 2.5% (ALG). An 8 hour daily cyclic heat stress (24°C to 36°C) was applied to …

Turning Algal Biomass Waste Into A Sustainable Substrate For Oyster Settlement, Ariana Liezl M. Lipat

Honors College Theses

When an aquatic ecosystem becomes oversaturated with nutrients, algae in the water utilize the excess nitrogen and phosphorus present and grow uncontrollably. This creates algal blooms on the surface of the water that deplete oxygen levels in the water and kill numerous organisms in the process. One method used to solve this issue is through Algal Turf Scrubber (ATS) technology: a natural wastewater treatment process in which water polluted with excess nitrogen and phosphorus is pumped across a floway to be absorbed by a culture of algae before it flows out of the system. The algal biomass is harvested periodically …

Impacts Of Algal Morphology And Water Flow On Macroalgal Microplastic Capture, Cheyenne M. Adams

Honors College Theses

Microplastic pollution is a major area of concern in marine environments, especially as microplastics enter the food web. This study used pipe cleaners and two lichen species as algal mimics, and Chaetomorpha sp. and Chondrus crispus as model algal species to test the effects of morphology and biomass on microbead and foam capture. This study also utilized two different water flow methods: vortices and waves. Results suggest that water flow, as well as biomass and morphology, play a role in microplastic capture in macroalgae. For all mimics and algal species, except Cladonia lichens, turfs with increased biomass and length showed …

Filamentous Green Algae (Cladophora Glomerata) In Near Shore Lake Ontario: An Investigation Of Tissue And Water Nutrient Dynamics Through A Period Of Growth And Decomposition., James L. Wagner Jr

Biology Theses

Cladophora glomerata, a filamentous green alga abundant in the Laurentian Great Lakes, has long been considered a nuisance throughout the region. Previous phosphorus (P) abatement practices and legislation successfully reduced the abundance of the algae, but with the introduction of dreissenid mussels, a resurgence has been observed. Though there is substantial literature and modeling of the growth cycle of Cladophora, relatively little research has been dedicated to the decomposition stage of the algae, a period which may contribute to a substantial influx of nutrients to near-shore environmental regions. By first examining a period of in-situ growth within Lake …

Allelopathic Effect Of Cereal Straw Extracts On Growth Of Raphidocelis Subcapitata And Microcystis Aeruginosa, Holly Wren

Graduate Theses and Dissertations

Harmful algal blooms are increasing in size, duration, and intensity around the globe. For several decades, cereal straws have been recognized as a viable algal control method, though the mechanisms by which cereal straws inhibit algae remain a topic of research. The objectives of this study were to evaluate the effectiveness of decomposing cereal straw extract, particularly rice (Oryza sativa) and barley (Hordeum vulgare) straw extract, to inhibit the green alga Raphidocelis subcapitata or cyanobacteria Microcystis aeruginosa in bioassays and to determine if the effectiveness of decomposing rice straw extract is altered by the presence of natural organic matter or …

Identifying Molecular Markers For Early Detection Of Toxic Cyanobacteria And Dinoflagellate, Shafqat F. Ehsan

Honors Program Theses and Research Projects

Harmful algal Blooms (HABs) develop when algal colonies grow out of control, causing toxicity or injury to humans, fish, shellfish, marine mammals, and birds. Most HABs of public health concern in saltwater generally are caused by eukaryotic dinoflagellates and diatoms. Prokaryotic cyanobacteria are usually responsible for freshwater blooms although they can contribute to saltwater and brackish blooms too. A common monitoring target of both groups is the saxitoxin-encoding genes. Saxitoxin(STX) is responsible for Paralytic shellfish poisoning, a foodborne illness developed from consumption of STX contaminated shellfish. Each cyanobacterial SXT gene cluster contains a set of core genes, common to all …

Cryptic Cryptophytes: The Plasticity In How Cryptophytes Respond To Changes In Resource Availability, Rachel Ann-Marie Schomaker

Theses and Dissertations

Resource variability and availability often drives competition within ecosystems, which can lead to the diversification of organismal niches and physiological capabilities. In aquatic systems, common resources that photosynthetic organisms, such as algae, compete for are light and carbon. Both the spectral characteristics (color) and carbon concentrations of an aquatic system vary with time and space, which means that algae need to be able to respond to changes in resource availability to survive. Using a group of ubiquitous unicellular eukaryotes known as cryptophytes, we investigated both how cryptophytes respond to changes in the available light spectrum at a physiological and genetic …

Measuring Optical Water Quality Parameters Using An Unmanned Aerial Vehicle ( Uav )-Based Multispectral Sensor, Lake Bloomington And Evergreen Lake, Jerome Michael Komas

Theses and Dissertations

Surface drinking water infrastructure is an integral part of the development and sustainability of societies around the world. However, these surface freshwater resources have been a challenge to monitor due to the vast number of in-situ samples needed to accurately quantify constituents, expenses of equipment, coordination of personnel, and laboratory costs. Lake Bloomington and Evergreen Lake (Hudson, Illinois) are two vital surface water features that serve as the drinking water reservoirs for the Bloomington, IL. Both reservoirs are within agricultural watersheds, with watershed inputs typically being high in turbidity and nitrate.

We utilized an Unmanned Aerial Vehicle (UAV) coupled with …