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Computer Sciences

Algorithms

Mathematics, Statistics and Computer Science Faculty Research and Publications

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Incorporating A Spatial Prior Into Nonlinear D-Bar Eit Imaging For Complex Admittivities, Sarah J. Hamilton, Jennifer L. Mueller, Melody Alsaker Feb 2017

Incorporating A Spatial Prior Into Nonlinear D-Bar Eit Imaging For Complex Admittivities, Sarah J. Hamilton, Jennifer L. Mueller, Melody Alsaker

Mathematics, Statistics and Computer Science Faculty Research and Publications

Electrical Impedance Tomography (EIT) aims to recover the internal conductivity and permittivity distributions of a body from electrical measurements taken on electrodes on the surface of the body. The reconstruction task is a severely ill-posed nonlinear inverse problem that is highly sensitive to measurement noise and modeling errors. Regularized D-bar methods have shown great promise in producing noise-robust algorithms by employing a low-pass filtering of nonlinear (nonphysical) Fourier transform data specific to the EIT problem. Including prior data with the approximate locations of major organ boundaries in the scattering transform provides a means of extending the radius of the low-pass …


A Feature Selection Algorithm To Compute Gene Centric Methylation From Probe Level Methylation Data, Brittany Baur, Serdar Bozdag Feb 2016

A Feature Selection Algorithm To Compute Gene Centric Methylation From Probe Level Methylation Data, Brittany Baur, Serdar Bozdag

Mathematics, Statistics and Computer Science Faculty Research and Publications

DNA methylation is an important epigenetic event that effects gene expression during development and various diseases such as cancer. Understanding the mechanism of action of DNA methylation is important for downstream analysis. In the Illumina Infinium HumanMethylation 450K array, there are tens of probes associated with each gene. Given methylation intensities of all these probes, it is necessary to compute which of these probes are most representative of the gene centric methylation level. In this study, we developed a feature selection algorithm based on sequential forward selection that utilized different classification methods to compute gene centric DNA methylation using probe …


Direct Eit Reconstructions Of Complex Admittivities On A Chest-Shaped Domain In 2-D, Sarah J. Hamilton, Jennifer L. Mueller Apr 2013

Direct Eit Reconstructions Of Complex Admittivities On A Chest-Shaped Domain In 2-D, Sarah J. Hamilton, Jennifer L. Mueller

Mathematics, Statistics and Computer Science Faculty Research and Publications

Electrical impedance tomography (EIT) is a medical imaging technique in which current is applied on electrodes on the surface of the body, the resulting voltage is measured, and an inverse problem is solved to recover the conductivity and/or permittivity in the interior. Images are then formed from the reconstructed conductivity and permittivity distributions. In the 2-D geometry, EIT is clinically useful for chest imaging. In this work, an implementation of a D-bar method for complex admittivities on a general 2-D domain is presented. In particular, reconstructions are computed on a chest-shaped domain for several realistic phantoms including a simulated pneumothorax, …