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Dnag As An Antibacterial Target, Zorik Chilingaryan

University of Wollongong Thesis Collection 1954-2016

The rise of “superbugs” – antibiotic resistant infection-causing bacteria - poses a catastrophic threat to public health, and prompts the investigation of new drug targets. In this work, the inhibition of specific proteins in bacterial DNA replication machinery – a rich source of new targets - was investigated.

The single stranded DNA-binding protein, SSB, is an interaction hub that engages in vital interactions with several partner proteins through a flexible C-terminal peptide motif (DDDIPF; SSB-Ct). Based on available crystal structures of SSB-Ct with partner proteins, molecular dynamics simulations were used to identify mobile elements of SSB-Ct and important interactions in …

Molecular Dynamics Simulation Of Fracture Behaviour In Nanocrystalline Fcc Structures, Linqing Pei

University of Wollongong Thesis Collection 1954-2016

The study of material failure has always been very important for human beings. Previous studies were mostly conducted at the macroscopic and microscopic scale based on continuum mechanics. However, the effect of nanostructural features on fracture has not been fully understood. Therefore, it is necessary to investigate the fracture mechanics at the atomic scale. Computational modelling, particularly atomistic (or molecular) simulation is becoming an increasingly important technology with which to analyse fracture. In this thesis, molecular dynamics (MD) simulations were carried out to investigate the fracture behaviours in Face Centred Cubic (fcc) nanocrystals.

Nanotwinned Copper (Cu) has an unusual combination …

Atomistic Simulation Of Plasticity Mediated By Grain Boundary And Stacking Fault Tetrahedron In Fcc Metals, Liang Zhang

University of Wollongong Thesis Collection 1954-2016

Nanocrystalline material has been the subject of widespread research over the past couple of decades. When the grain sizes of crystals are down to nanoscale, the so-called nanocrystalline material can exhibit distinct physical properties, unlike their conventional counterparts. The strength and plastic deformation of nanocrystalline material were among the most broadly investigated properties from the mechanical and material perspective. But since the rapid increases in computational power, atomistic simulation has been used extensively to study the mechanical properties of nanocrystalline material from which enormous progress has been made in computational simulation to understand the deformation mechanisms at an atomic scale. …

Deformation Mechanisms In Nanotwinned Materials By Molecular Dynamics Simulations, Xing Zhao

University of Wollongong Thesis Collection 1954-2016

Molecular dynamics simulations are performed to investigate the deformation mechanisms of nanotwinned materials. The simulations oftextured polycrystalline Cu under tensile loading parallel to the twin boundary (TB) reveal that the transmissions of dislocations dominate the plastic deformation. The majority of the TBs retain their initial coherency even after a considerable deformation. The tensile strength monotonically increases as the twin spacing decreases. The main strengthening effect in nanotwinned Cu results from TB restricting the dislocation transmission across TB. Dislocation processes involved in the slip-twin interactions are identified at atomic level, including the direct and indirect transmissions. The direct transmission involves either …