Digital Commons Network^™

Kingswood Lake Management Plan, Sarah Martina Tierney

Honors Theses and Capstones

High water quality and natural buffers exist on Kingswood Lake located in Brookfield, New Hampshire. A comprehensive lakes inventory (CSI) was recorded and health of the land, wildlife, and waterways were observed. Educational outreach was taken to inform the local community and to instruct them on proper stewardship of the land. A completed watershed management plan was constructed including key recommendation of limiting nitrogen loading in the area, checking septic systems for leaching, stabilizing shoreline from erosion, and establishing man-made rain gardens to help preserve water quality. The Kingswood watershed management plan acts as a guide for the town of …

The Pleiotropic Effects Of Beneficial Mutations Of Adapted Escherichia Coli Populations, Brian Scott Van Dam

Honors Theses and Capstones

Mutations that improve fitness in one environment can often be beneficial, deleterious, or neutral in alternative environments. When a single mutation effects fitness in multiple environments, it is said to be a pleiotropic, which can have important consequences for niche specialization, niche expansion, speciation, and even extinction in the face of environmental change. While previous studies have revealed that pleiotropy is nearly universal, the role of adaptive history in the spectrum of pleiotropic effects has yet to undergo detailed experimental observation. Using experimental evolution we gathered beneficial mutations in a previously adapted strain of Escherichia coli growing in the same …

The Distribution Of Fitness Effects Of Spontaneous Mutations In Vibrio Fischeri, Chelsea K. Jones

Honors Theses and Capstones

Mutations are the ultimate source of the biological diversity on which natural selection acts, but the vast majority of these mutations are harmful. As such, mutations lead to disease states like cancer, extinction of small populations, and can drive pathogen evolution. Unfortunately, because mutations are rare and past studies have been subject to detection biases, very little is known about the distribution of fitness effects from naturally occurring mutations. In this study, we used mutation accumulation and full genome sequencing to capture naturally occurring mutations before they were exposed to the sieve of natural selection in Vibrio fischeri. We …

Insights From Project Feederwatch: Changes In The Abundance And Occurrence Of Birds In New Hampshire Over The Past 24 Years, Lee A. Sutcliffe

Honors Theses and Capstones

Changes in the climate and land use over time can lead to changes in the composition of wildlife communities. Using data from Project FeederWatch, we examine trends in the abundance and occurrence of birds documented in the winters from 1988 to 2012 in New Hampshire. Changes in abundance and occurrence are summarized for individual bird species as well as across species based on life history traits. In addition, we examined trends for the state as a whole as well as in subregions. We discuss these changes with regards to the variations of climate and land use that are occurring throughout …

Effects Of Keratin Filaments On Erk Signaling During Fas-Induced Death Of Cervical Cancer (Hela) Cells, Amanda Berger

Honors Theses and Capstones

Survival of cancer cells is influenced by a variety of factors, including physical elements such as keratin filaments. We know HeLa cells containing or lacking keratin 8/18 intermediate filaments (K+ and K- cells, respectively) are more sensitive to the death-inducing effects of Fas agonist compared to the cytokines tumor necrosis factor alpha (TNF-α) or TNF-related apoptosis-inducing ligand. Additionally, K- cells are more sensitive to Fas-induced death than K+ as shown by previous studies using mitochondrial activity and caspase activation assays. In the current study we tested the hypothesis that keratin filaments associate with the mitogen activated protein kinase (MAPK) cascade …

Investigating The Interactions Between Cyanobacteria And Vibrio Parahaemolyticus, Caroline E. Ward

Honors Theses and Capstones

One well-known pathogen that has been the topic of many recent studies is Vibrio parahaemolyticus, which causes thousands of foodborne illnesses a year, mostly from the ingestion of raw or undercooked oysters. It has been shown cyanobacteria can act as a long-term reservoir of Vibrio cholerae, another pathogenic Vibrio, by encasing the cells within mucilaginous sheaths during which Vibrios enter a viable but non-culturable state. In this study we investigated the interaction of V. parahaemolyticus with cyanobacteria to determine whether cyanobacteria aid in the longevity and survival of V. parahaemolyticus. We found that non-pathogenic V. parahaemolyticus …

Diel Vertical Migration Strategies Of Zooplankton In Oligotrophic Russell Pond, New Hampshire, Kelsey Ann Dobe

Honors Theses and Capstones

Russell Pond is an ultra-oligotrophic lake with low chlorophyll a (1.9 mg L^-1), total phosphorus (3.4 mg L^-1), high Secchi Disk (10.4 m) and high light transmission (water coefficient of water, k_w=0.33). Vertical migration of Chaoborus, Bosmina, Daphnia, and copepods were examined using net collections of zooplankton discrete depth counts and sonar. Three contrasting patterns of vertical migration were observed in Russell Pond. Chaoborus punctipennis larvae vertical migration began at 7 pm and migrated through the entire lake water column, a total of 23 m from the sediments to the surface water in …

Quality Of Olive Oils Available Locally: Chemical, Sensory And Market Investigations, Madeleine M. Gould

Honors Theses and Capstones

Olive oil is a high quality food that comes at a high-quality price. Extra virgin olive oils are obtained through specific methods created to extract the highest quality oil. The world market of olive oil is rife with accusations of adulteration and false claims regarding quality. These are serious accusations, since adulteration results in lower quality oils. True extra virgin olive oils contain higher levels of beneficial compounds including antioxidant phenolic compounds. Specific mechanisms have been identified in which phenolic compounds in the olive oil matrix exhibit antioxidant activity contributing to the prevention of cancer and cardiovascular disease, among other …

An Investigation Into Nosocomial Infection Using Data Mining, Alexander Rocke

Honors Theses and Capstones

The purpose of this study was to investigate potential risk factors and analyze trends that are associated with nosocomial infection using an inferential statistical methodology that would allow for the identification and future tracking of the aforementioned trends. The raw data on which statistical analyses were performed was collected and aggregated by the National Healthcare Safety Network for the year 2011 (5)

The results of the statistical analyses revealed that many factors should be taken into account when considering the causes of nosocomial infection, in paticular, that the amount of aggregated hours a certain type of ward (burn, medical, surgical, …

The Effect Of Rider Level On Equine Mean Heart Rate At The Trot, Jacqueline Marinoff

Honors Theses and Capstones

The effect of riders at two different levels of riding ability on the mean heart rates (HR) of school horses at the trot was studied. Five horses were each paired with a beginner (n=4) and an intermediate (n=5) rider, and the mean HR generated by the two riders at the trot were compared for each horse. There was a significant (p

Will The Exploratory Behavior Of Lobsters Decrease As They Become Familiar With Their Environment?, Marissa Cuda

Honors Theses and Capstones

Previous studies have shown that most lobsters have a home range in which they reside on a daily basis. The tendency for lobsters to reside in a particular area suggests that they have the ability to learn the characteristics of an area using exploratory behavior. We hypothesize that the exploratory behavior of juvenile lobsters will decrease as time spent in a novel environment increases; specifically exploratory behavior will decrease as the lobsters continuously learn the environment. Exploratory activity of juvenile lobsters was monitored in six lobsters using two separate maze complexities. Lobsters were video recorded and activity was measured based …

The Possible Role Of Extra-Ocular Photoreceptors In The Entrainment Of Lobster Circadian Rhythms To Light:Dark Cycles, Sara A. Mckinney

Honors Theses and Capstones

The American lobster, Homarus americanus, is a decapod crustacean whose daily nocturnal rhythms of activity are driven, in part, by an internal biological clock. While this circadian clock is capable of producing a rhythm of approximately 24 hours on its own, it can also be entrained to light:dark cycles. Recent findings in our laboratory suggest that lobsters have photosensitive neurons throughout their nervous system (extra-ocular photoreceptors). The objective of this research was to test the hypothesis that these extra-ocular photoreceptors aid in entraining their daily rhythm of activity. First, the locomotion of juvenile American lobsters was measured in trials under …

Norepinephrine Involvement In The Intermittent Swim Stress-Induced Deficit In Spatial Learning And Memory, Emily Elgert

Honors Theses and Capstones

Learning and memory impairments are often caused by stress disorders including depression. The present study investigated the involvement of norepinephrine in the swim stress-induced deficits of spatial learning and memory. Exposure to intermittent swim stress (ISS) followed by learning and memory tests in the Morris water maze (MWM) were used to investigate this relationship. The ISS paradigm consists of intermittent exposure to cold water, producing stress responses in rats. Reboxetine, a norepinephrine selective reuptake inhibitor (NSRI), was employed to investigate whether this compound reverses the ISS-induced deficit. In other words, rats exposed to the ISS, were hypothesized to experience impaired …

The Investigation Of Microbe-Nematode Interactions, Chelsea K. Crepeau

Honors Theses and Capstones

No abstract provided.

The Digital Divide: Broadband Accessibility In Northern New Hampshire, Nicole M. D'Alessio

Honors Theses and Capstones

No abstract provided.

Exploring The Importance Of Single Nucleotide Polymorphisms Of Hspa9 In Dna Of Sarcoma Patients, Christine M. Hebert

Honors Theses and Capstones

The aim of this project was to identify genetic variants that may influence the risk and progression of sarcoma through targeted genotyping of HSPA9 gene. It is important to look at genetic variants in DNA samples because if a variant is determined to be more likely than another, a screening for the particular variant can be done to identify a patient’s risk of sarcoma. The study population was sarcoma patients from the International Sarcoma Kindred Study. These patients had no mutations in p53 or MDM2. Genotyping data from the HapMap project (hapmap.org) for HSPA9 was used to identify the polymorphisms …

Filtering Efficiency And Feeding Mechanisms Of Daphnia Pulex On Microcystis Aeruginosa And Nannochloropsis, Elizabeth Orlowicz

Honors Theses and Capstones

The filtering and feeding rate of Daphnia pulex from the Old Durham Reservoir, Durham, NH, were measured to determine the feeding efficiency on different concentrations of non-toxic Nannochloropsis (Class Eustigmatophyceae) and toxigenic cyanobacteria Microcystis aeruginosa. Direct observations of thoracic appendage beats and post-abdominal rejections were also measured at 5*10⁵ and 10⁶ cells mL^-1 concentrations of Nannochloropsis and M. aeruginosa to examine the feeding mechanisms of the D. pulex. In the presence of increasing Nannochloropsis concentrations, the filtering rates decreased and the feeding rates increased. When exposed to M. aeruginosa, both the filtering and feeding …

Minireview: Protein Interactions, Jessica Child

Honors Theses and Capstones

No abstract provided.

One Can’T Stand On Its Own: Are Non-Luminescence Traits Necessary For V. Fischeri Colonization Of E. Scolopes?, Feier Liu

Honors Theses and Capstones

Vibrio fischeri and Euprymna scolopes squid establish mutualistic symbiosis and select for each other in the natural environment. V. fischeri provides bioluminescent camouflage for E. scolopes while E. scolopes provides nutrients for V. fischeri. The most intriguing aspect of this relationship is that E. scolopes is highly selective and only allows sustained colonization by luminous, but not dark V. fischeri. Luminescence is the key symbiosis trait; however, other bacterial factors may also allow squid recognition. We hypothesized that there are luminescence linked traits that contribute to colonization. V. fischeri with luminescence variation was isolated and tested for oxidative resistance, …

An Analysis Of The Incidence Of Antibiotic Resistant Infections In The State Of New Hampshire, Melanie Duhamel

Honors Theses and Capstones

The purpose of this research paper is to study, analyze, and characterize antibiotic resistance in both the theoretical and investigative contexts. After an in-depth examination of the literature and previous research investigating the definition, origin, affected organisms, and proposed coping mechanisms related to antibiotic resistance, a research plan was organized and executed.

The organism Methicillin Resistant Staphylococcus aureus (MRSA) was selected as the focus of study because of abundant current research and regulated monitoring of this organism in healthcare organizations. Data about the incidence rates of MRSA in theUnited States was collected from reports disseminated by the Center for Disease …

Effects Of Incremental Dietary Levels Of Ground Flaxseed On Milk Production, Ruminal Metabolism, And Enteric Methane Emissions In Organic Dairy Cows, Katie Velez

Honors Theses and Capstones

Ground Flaxseed (Linum uitatissimum) is a lipid supplement that is commonly fed to dairy cows. It is believed that supplemental lipid can change the Fatty Acid (FA) composition in the milk, and decrease methane production. Twenty lactating organic Jersey cows, housed at the UNH Organic Dairy Research Farm (ODRF), were randomly assigned to five replicated 4 × 4 Latin squares to investigate the effects of increasing dietary levels of ground flaxseed (0, 5, 10, or 15% of the diet dry matter) on animal fperformance (e.g., dry matter intake, milk production, milk composition), ruminal metabolism, and enteric methane emissions. Each …

Variations In Carotenoids In Plasma From Jersey Cows At An Organic Dairy Compared To A Conventional Dairy Over Time, Jillian M. Smith

Honors Theses and Capstones

Interest in organic milk is increasing. By USDA Certified Organic standards, animals must be fed on pasture for a minimum of 120 days. Research indicates that various factors such as diet impact the nutritional quality and composition of milk. The objective of this study was to understand how feeding practices affected bovine plasma carotenoid concentrations over time. Plasma samples were collected from 9 cows fed on pasture at an organic dairy and from 9 cows fed total mixed ration (TMR) at a conventional dairy. Components were extracted from the plasma and separated via High Performance Liquid Chromatography. Results showed that …

Biosecurity Risk Assessment Of The Fairchild Dairy Nutrition Research Center, Margaret Lynch

Honors Theses and Capstones

No abstract provided.

The Effects Of Cytokinin On The Transcriptional Regulation Of Pin Expression In Arabidopsis Thaliana, Elizabeth Burgess

Honors Theses and Capstones

The processes of cell division and differentiation are critical to the development of any multicellular organism. During the formation of plant roots these processes take place at a region of the root tip called the meristem. Cytokinin and auxin are two plant growth hormones that influence this process. Although these two growth hormones are both necessary they also appear in many ways to have an antagonistic relationship. As meristematic root cells undergo differentiation they cease dividing. It has been proposed that the size of the root meristem and thus the overall rate of root growth are determined by the balance …

The Effects Of Dependent Infants On The Social Behavior Of Mantled Howler Monkeys (Alouatta Palliate), Keziah Katz

Honors Theses and Capstones

Six weeks of observation on eight groups of wild mantled howler monkeys revealed that the presence of a dependent infant alters the frequency of social interactions between a female with an infant and other adult monkeys. Males preferred to spend time with females without infants but still spent more time with females with infants than with males. Females without infants spent significantly less time with females with infants than with males or other females without infants and females with infants decreased their frequency of social interaction overall without preference for males, females or other females with infants.

Polycystic Ovary Syndrome: Pathogenesis, Health Consequences, And Treatment Of Pcos In Relation To Insulin Resistance, Danielle Bernier

Honors Theses and Capstones

The purpose of this paper is to present a review of the current research on polycystic ovary syndrome (PCOS). PCOS is one of the most common endocrine disorders in women of reproductive age, affecting 5-10% of the population. Despite its prevalence, PCOS remains largely under unknown. This review has been broken down into two separate chapters. The first is the pathogenesis and related health consequences of PCOS. This chapter focuses on the diagnosis of PCOS as well as the prevalence and incidence of the disease. It then delves into the pathogenesis with a focus on genetics, obesity, insulin resistance and …

Genetic Engineering Of Dunaliella: Potential For Improved Biofuel Production, Alison Wirshing

Honors Theses and Capstones

Biodiesel produced from algal lipids is a promising source of renewable energy. Reasons for using algae, as opposed to vascular plants, are numerous. Oleaginous algae do not require fertile land or fresh water to grow, and therefore do not compete with food crop resources. Algae have short generation times and higher growth rates than larger vascular plants allowing for synthesis and accumulation of large quantities of neutral lipids, about 20-50% of the dry cell weight, in a short period of time. The efficiency of biodiesel production from oleaginous algae could be improved by using transgenic (genetically engineered) algae. The goal …

Replication Protein A (Rpa70c) Negatively Regulates Ribonucleotide Reductase (Rnr) In The Model Plant Arabidopsis Thaliana, Stacy Wong

Honors Theses and Capstones

Replication protein A (RPA) is a heterotrimeric single-stranded DNA-binding protein that plays an important role in cellular responses to DNA damage. For example, RPA can activate the cell-cycle checkpoint protein ATR in the presence of persisting DNA damage. The model plant Arabidopsis thaliana has 5 functional homologous RPA70 genes which may play specific roles in response to DNA damaging agents. One chemical that causes DNA damage in Arabidopsis is Hydroxyurea (HU), which blocks DNA replication by inhibiting activity in Ribonucleotide Reductase (RNR), an enzyme responsible for the production of free deoxyribonucleotides (dNTPs). In studies of Arabidopsis mutants, atr plants, but …

Defeating Cytoplasmic Sequestration Of P53 In Human Breast Cancer Cells; Is Mortalin Involved?, Sarah Yunes

Honors Theses and Capstones

Cytoplasmic sequestration of p53, possibly caused by p53 interacting with mortalin, can prevent p53 from functioning in DNA repair and apoptosis, causing aberrant growth. This project treated SKBR3 breast cancer cells with MKT-077, a dye that is a competitive binder to mortalin to see if it would result in the release of p53 from the cytoplasm and restoration of p53 function. Treatment resulted in partial translocation of a protein suspected to be p53 to the nucleus and apoptosis initiated at the mitochondria.

Transformation Of Tobacco With The Ba5 Cement Protein Gene From Balanus Amphitrite, Matt Marquis

Honors Theses and Capstones

Expressing barnacle cement proteins genes such as the BA5 gene in plants may enable individual study and analysis. This technique is effective since barnacle cement is difficult to work with as a whole in the lab setting. The BA5 gene extracted from Balanus amphitrite is transferred to tobacco leaf tissue using Agrobacterium tumefaciens.