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Zooplankton Biodiversity In The Northeast Gulf Of Mexico And On The West Florida Shelf From 2005 - 2014, Megan Ferguson

USF Tampa Graduate Theses and Dissertations

Zooplankton abundance and biodiversity was measured in the northeast Gulf of Mexico (NEGoM) and on the West Florida Shelf. Bongo net samples were collected between May 2005 to September 2009 through the SEAMAP program, and between July 2010 to August 2014 through the C-IMAGE program. Calanoid copepods were the most abundant zooplankton group in most of the samples collected, but ostracods, larvaceans, and chaetognaths were also abundant. Shannon and Inverse Simpson indices were calculated for all zooplankton samples and generally showed similar trends, but only Shannon indices were used for statistical analyses. In the winter and spring there were significant …

Use Of Spectrofluorometry To Detect Petroleum Hydrocarbons In The Marine Environment, Mary Iris Abercrombie

USF Tampa Graduate Theses and Dissertations

The genesis of this research was the Deepwater Horizon oil spill, which discharged petroleum and gas into the Gulf of Mexico for 87 days in 2010. High-resolution fluorescence spectroscopy was employed for the detection of petroleum in seawater samples following the oil spill. Fluorescence arises from the chemical structure of π-bonding in C=C bonds, especially those in aromatic structures. Spectrofluorometry was also used to observe and track the formation of petroleum plumes in seawater undergoing controlled physical dispersion in a wave tank, both with and without the addition of chemical dispersant. Further, the changing fluorescence characteristics of a broad range …

High-Resolution Investigation Of Event Driven Sedimentation: Response And Evolution Of The Deepwater Horizon Blowout In The Sedimentary System, Rebekka A. Larson

USF Tampa Graduate Theses and Dissertations

This Dissertation combines the investigation of the sedimentological impacts of the Deepwater Horizon (DwH) blowout event in the deep-sea benthos, with the refinement and advancement of methods and approaches for high-resolution investigations of events preserved in sedimentary records. An approach that combined, rapid collection of cores, a continued annual time series collection of cores, and high-resolution sampling and analyses, in particular short-lived Radioisotopes (SLRad), enabled the temporal resolution required to detect the sedimentary response to the short-duration DwH event, and evaluate post-event sedimentation patterns at a comparable time scale (months).

The collection of 179 sediment cores from 80 sites between …

Regeneration Of Trace Metals During Phytoplankton Decay: An Experimental Study, Adrienne P. Hollister

USF Tampa Graduate Theses and Dissertations

Trace metals act as important nutrients, and sometimes toxins, to phytoplankton and other marine microorganisms. When phytoplankton decay, the elements in their cells are released back into the water column through regeneration (also referred to as remineralization), one of the processes responsible for governing concentrations of dissolved trace metals and macronutrients in depth profiles. In order to experimentally study regeneration, controlled experimental incubations of mixed phytoplankton assemblages from the Gulf of Mexico (GoM) and monocultures of the diatom Pseudo-nitzschia dolorosa and the dinoflagellate Karenia brevis were placed in the dark and monitored as they decayed with naturally present bacteria. Over …

Spatial And Temporal Distributions Of Pelagic Sargassum In The Intra-Americas Sea And Atlantic Ocean, Mengqiu Wang

USF Tampa Graduate Theses and Dissertations

Pelagic Sargassum is one type of marine macroalgae that is known to be abundant in the Gulf of Mexico and Sargasso Sea. It is also known to serve as a critical habitat for many marine animals. In the past few years, large amounts of Sargassum have been reported in the Tropical Atlantic and Caribbean Sea (CS), causing significant environmental and economic problems. The goal of this study is to improve the understanding of Sargassum distributions, quantity, transport pathways, and bloom mechanisms in the CS and Tropic Atlantic through combining a variety of techniques including satellite remote sensing, field and laboratory …

Environmental Controls On The Geochemistry Of Globorotalia Truncatulinoides In The Gulf Of Mexico: Implications For Paleoceanographic Reconstructions, Caitlin Elizabeth Reynolds

USF Tampa Graduate Theses and Dissertations

Modern observations of planktic foraminifera from sediment trap studies help to constrain the regional ecology of paleoceanographically valuable species. Results from a weekly-resolved sediment trap time series (2008–2014) in the northern Gulf of Mexico demonstrate that 92% of Globorotalia truncatulinoides flux occurs in winter (January, February, and March), and that encrusted and non-encrusted individuals represent calcification in distinct depth habitats. We use individual foraminiferal analysis (IFA) of G. truncatulinoides tests to investigate differences in the elemental (Mg/Ca) and isotopic composition (18O and 13C) of the encrusted and non-encrusted ontogenetic forms of G. truncatulinoides, and to estimate their calcification depth in …

Application Of Modern Foraminiferal Assemblages To Paleoenvironmental Reconstruction: Case Studies From Coastal And Shelf Environments, Christian Haller

USF Tampa Graduate Theses and Dissertations

The aim of paleoenvironmental studies is to reconstruct characteristics of the past environment from fossil assemblages preserved in sedimentary strata. Thus, studies of modern surface assemblages, quantitatively correlated to the environmental parameters, are required before reliable interpretations can be made. For this dissertation, two different techniques were applied in two case studies: a reconstruction making use of a benthic foraminiferal transfer function from the intertidal marshes in the eastern Mississippi Sound, Alabama/Mississippi, and a qualitative reconstruction of ocean current activity on the Western Australian shelf.

Modern salt-marsh foraminifera were collected from Grand Bay, Pascagoula, Fowl River, and Dauphin Island across …

Evaluating Satellite And Supercomputing Technologies For Improved Coastal Ecosystem Assessments, Matthew James Mccarthy

USF Tampa Graduate Theses and Dissertations

Water quality and wetlands represent two vital elements of a healthy coastal ecosystem. Both experienced substantial declines in the U.S. during the 20^th century. Overall coastal wetland cover decreased over 50% in the 20^th century due to coastal development and water pollution. Management and legislative efforts have successfully addressed some of the problems and threats, but recent research indicates that the diffuse impacts of climate change and non-point source pollution may be the primary drivers of current and future water-quality and wetland stress. In order to respond to these pervasive threats, traditional management approaches need to adopt modern …

Genetic Identification And Population Characteristics Of Deep-Sea Cephalopod Species In The Gulf Of Mexico And Northwestern Atlantic Ocean, Amanda Sosnowski

USF Tampa Graduate Theses and Dissertations

Nearly all deep-sea cephalopod life history studies have been completed by examination of specimens collected in the wild. Much of this work is like piecing together a puzzle; knowledge of the life history of many species remains fragmented and hence, taxonomically and phylogenetically confused. Molecular approaches and sequencing technologies are powerful tools for deciphering wild-type cephalopod life history and population dynamics. Use of molecular markers offers additional certainty for identifying specimens damaged during deep-sea collections and can elucidate often cryptic, intra- and interspecific diversity. The research presented in this study assessed broad genetic patterns of biodiversity in deep-sea cephalopods from …

Polycyclic Aromatic Hydrocarbon Metabolites As A Biomarker Of Exposure To Oil In Demersal Fishes Following The Deepwater Horizon Blowout, Susan Susan Snyder

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20th, 2010, releasing 4.9 million barrels of Louisiana crude oil into the Gulf of Mexico (GoM). Subsequent to the Deepwater Horizon blowout, sediment cores revealed oil on the northern GoM seafloor and abnormal skin lesions were seen in GoM fishes. Exposure to polycyclic aromatic hydrocarbons (PAHs), a component of crude oil, in fish has been associated with many sublethal effects, including cancer and population-level effects. Using a biomarker of exposure to PAHs, this thesis evaluates inter-species, temporal and spatial differences in exposure to hydrocarbon contamination between three species of fish with varying levels …

Spatial And Temporal Extent Of A Subsurface Hydrocarbon Intrusion Following The Deepwater Horizon Blowout, Kathleen Watson

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon (DWH) oil spill in the Gulf of Mexico (GoM) released an estimated 4.9 million barrels of oil between April 20, 2010 and July 15, 2010. An estimated 36% of the oil formed a neutrally buoyant intrusion, containing both dissolved compounds and oil microdroplets, between 1000 and 1300 m depth. This study used geographic information systems software, and data from water samples that were collected as part of the National Resource Damage Assessment (NRDA), to determine that an area of at least 1,600 km² was exposed to DWH oil. Toxic BTEX (benzene, toluene, ethylbenzene, and …

Relative Survival Of Gags Mycteroperca Microlepis Released Within A Recreational Hook-And-Line Fishery: Application Of The Cox Regression Model To Control For Heterogeneity In A Large-Scale Mark-Recapture Study, Beverly J. Sauls

USF Tampa Graduate Theses and Dissertations

The objectives of this study were to measure injuries and impairments directly observed from gags Mycteroperca microlepis caught and released within a large-scale recreational fishery, develop methods that may be used to rapidly assess the condition of reef fish discards, and estimate the total portion of discards in the fishery that suffer latent mortality. Fishery observers were placed on for-hire charter and headboat vessels operating in the Gulf of Mexico from June 2009 through December 2012 to directly observe reef fishes as they were caught by recreational anglers fishing with hook-and-line gear. Fish that were not retained by anglers were …

Occurrence, Toxicity, And Diversity Of Pseudo-Nitzschia In Florida Coastal Waters, Sheila O'Dea

USF Tampa Graduate Theses and Dissertations

Domoic acid (DA), a potent neurotoxin that has the potential to cause amnesic shellfish poisoning (ASP), is produced by members of the marine diatom genus Pseudo-nitzschia. Outbreaks of ASP in humans and of DA poisoning in birds and marine mammals have been reported across the United States and Canada since the late 1980's. Pseudo-nitzschia species can be extremely abundant in Florida waters, with densities often exceeding 10⁶ cells/L, and sometimes exceeding 10⁷ cells/L. Based on preliminary data, it is evident that at least nine species of Pseudo-nitzschia are found in Florida coastal waters. At least six of …

Impacts Of Artificial Reefs On Surrounding Ecosystems, Sarine Manoukian

USF Tampa Graduate Theses and Dissertations

Artificial reefs are becoming a popular biological and management component in shallow water environments characterized by soft seabed, representing both important marine habitats and tools to manage coastal fisheries and resources. An artificial reef in the marine environment acts as an open system with exchange of material and energy, altering the physical and biological characteristics of the surrounding area. Reef stability will depend on the balance of scour, settlement, and burial resulting from ocean conditions over time. Because of the unstable nature of sediments, they require a detailed and systematic investigation.

Acoustic systems like high-frequency multibeam sonar are efficient tools …

Ecological Dynamics Of Livebottom Ledges And Artificial Reefs On The Inner Central West Florida Shelf, Jennifer Maria Dupont

USF Tampa Graduate Theses and Dissertations

The West Florida Shelf (WFS) is one of the largest and most diversely-used continental shelf/slope systems in the world. The presence of paleoshorelines and scarped hardbottom outcrops (up to 4 m in relief) along the inner shelf (10-30 m depth) provide important habitat for a variety of infaunal, epifaunal, and fish assemblages that contribute to the productivity of the region. This dissertation will present a comprehensive overview of the geological, physical, and chemical settings of the inner West Florida Shelf, with particular focus on biological and ecological community dynamics of epibenthic macroinvertebrates, algae, and fish assemblages. Baseline and comparative data …

Application Of Remote Sensing Methods To Assess The Spatial Extent Of The Seagrass Resource In St. Joseph Sound And Clearwater Harbor, Florida, U.S.A., Cynthia A. Meyer

USF Tampa Graduate Theses and Dissertations

In the event of a natural or anthropogenic disturbance, environmental resource managers require a reliable tool to quickly assess the spatial extent of potential damage to the seagrass resource. The temporal availability of the Landsat 5 Thematic Mapper (TM) imagery, 16-20 days, provides a suitable option to detect and assess damage to the seagrass resource. In this study, remote sensing Landsat 5 TM imagery is used to map the spatial extent of the seagrass resource. Various classification techniques are applied to delineate the seagrass beds in Clearwater Harbor and St. Joseph Sound, FL. This study aims to determine the most …

Evolution And Field Application Of A Plankton Imaging System, Andrew Walker Remsen

USF Tampa Graduate Theses and Dissertations

Understanding the processes controlling the distribution and abundance of zooplankton has been a primary concern of oceanographers and has driven the development of numerous technologies to more accurately quantify these parameters. This study investigates the potential of a new plankton imaging sensor, the shadowed image particle profiling and evaluation recorder (SIPPER), that I helped develop at the University of South Florida, to address that concern. In the first chapter, results from the SIPPER are compared against concurrently sampling plankton nets and the optical plankton counter (OPC), the most widely used optical zooplankton sampling sensor in the field. It was found …

A Three-Dimensional Biophysical Model Of Light, Nutrient, And Grazing Controls On Phytoplankton Competition Affecting Red Tide Maintenance On The West Florida Shelf, Scott P. Milroy

USF Tampa Graduate Theses and Dissertations

A coupled, three-dimensional, time-dependent numerical model of water circulation, spectral light, plankton dynamics, nutrient/CDOM loadings, and zooplankton grazing provided an assessment of the factors affecting the growth and maintenance of red tides on the west Florida shelf (WFS). The coupled biophysical model consisted of state variable quantities for temperature, salinity, horizontal/vertical velocity components, turbulent diffusion, spectral light, colored dissolved organic matter (CDOM), dissolved organic and inorganic carbon, particulate silica, four dissolved inorganic nutrient pools (nitrate, ammonium, phosphate, and silicate), and four phytoplankton groups (diatoms, microflagellates, non-toxic dinoflagellates, and the red tide organism Karenia brevis).

The model also included a complex …

Late Holocene Planktic Foraminiferal Assemblages From Orca Basin: Effects Of Dissolution On Faunal Assemblages, Denise D. Palmer

USF Tampa Graduate Theses and Dissertations

Studies of planktic foraminifers have been, and continue to be, very important to paleoceanographic reconstructions and are dependent on the integrity of the carbonate tests. This study investigates the methods and procedures that can be used to obtain an accurate planktic foraminifer assemblage. Samples from Orca Basin boxcore OB-BC4D were processed and examined to obtain census data on planktic foraminifers. Experimentation of the splitting technique demonstrates the method is acceptable for estimating a planktic foraminifer assemblage. The effects of a sonication step in the processing of the faunal assemblage were also examined and revealed that sonication is not recommended for …

Diversity And Production Of Phytoplankton In The Offshore Mississippi River Plume And Coastal Environments, Boris Wawrik

USF Tampa Graduate Theses and Dissertations

River discharge leads to extensive phytoplankton blooms often observed in ocean color satellite images to extend far into the open ocean as high chlorophyll plumes. We investigated diversity, distribution and ecology of phytoplankton populations in the Mississippi River plume, both spatially and in the water column using molecular tools. A method was developed for the quantification of diatom/pelagophyte rbcL (large subunit of Ribulose-1,5-bisphosphate Carboxylase/Oxygenase) mRNA using quantitative PCR and applied to cultures and in the plume. The vertical structure of phytoplankton species in the Mississippi River plume was described by flow cytometry, pigments, rbcL mRNA and rbcL cDNA libraries. High …