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Software Engineering

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Algorithms

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Evaluating And Improving The Efficiency Of Software And Algorithms For Sequence Data Analysis, Hugh L. Eaves Jan 2016

Evaluating And Improving The Efficiency Of Software And Algorithms For Sequence Data Analysis, Hugh L. Eaves

Theses and Dissertations

With the ever-growing size of sequence data sets, data processing and analysis are an increasingly large portion of the time and money spent on nucleic acid sequencing projects. Correspondingly, the performance of the software and algorithms used to perform that analysis has a direct effect on the time and expense involved. Although the analytical methods are widely varied, certain types of software and algorithms are applicable to a number of areas. Targeting improvements to these common elements has the potential for wide reaching rewards. This dissertation research consisted of several projects to characterize and improve upon the efficiency of several …


Toward The Static Detection Of Deadlock In Java Software, Jose E. Fadul Mar 2006

Toward The Static Detection Of Deadlock In Java Software, Jose E. Fadul

Theses and Dissertations

Concurrency is the source of many real-world software reliability and security problems. Concurrency defects are difficult to detect because they defy conventional software testing techniques due to their non-local and non-deterministic nature. We focus on one important aspect of this problem: static detection of the possibility of deadlock - a situation in which two or more processes are prevented from continuing while each waits for resources to be freed by the continuation of the other. This thesis proposes a flow-insensitive interprocedural static analysis that detects the possibility that a program can deadlock at runtime. Our analysis proceeds in two steps. …