Digital Commons Network^™

Developing Expressed Sequence Tag Libraries And The Discovery Of Simple Sequence Repeat Markers For Two Species Of Raspberry (Rubus L.), Jill M. Bushakra, Kim S. Lewers, Margaret E. Staton, Tetyana Zhebentyayeva, Christopher A. Saski

Entomology & Plant Pathology Publications and Other Works

Background

Due to a relatively high level of codominant inheritance and transferability within and among taxonomic groups, simple sequence repeat (SSR) markers are important elements in comparative mapping and delineation of genomic regions associated with traits of economic importance. Expressed sequence tags (ESTs) are a source of SSRs that can be used to develop markers to facilitate plant breeding and for more basic research across genera and higher plant orders.

Methods

Leaf and meristem tissue from ‘Heritage’ red raspberry (Rubus idaeus) and ‘Bristol’ black raspberry (R. occidentalis) were utilized for RNA extraction. After conversion to cDNA …

Substantial Genome Synteny Preservation Among Woody Angiosperm Species: Comparative Genomics Of Chinese Chestnut (Castanea Mollissima) And Plant Reference Genomes, Margaret Staton, Tetyana Zhebentyayeva, Bode Olukolu, Guang Chen Fang, Dana Nelson, John E. Carlson, Albert G. Abbott

Entomology & Plant Pathology Publications and Other Works

Background

Chinese chestnut (Castanea mollissima) has emerged as a model species for the Fagaceae family with extensive genomic resources including a physical map, a dense genetic map and quantitative trait loci (QTLs) for chestnut blight resistance. These resources enable comparative genomics analyses relative to model plants. We assessed the degree of conservation between the chestnut genome and other well annotated and assembled plant genomic sequences, focusing on the QTL regions of most interest to the chestnut breeding community.

Results

The integrated physical and genetic map of Chinese chestnut has been improved to now include 858 shared sequence-based markers. …

Identification And Molecular Characterization Of The Switchgrass Ap2/Erf Transcription Factor Superfamily, And Overexpression Of Pverf001 For Improvement Of Biomass Characteristics For Biofuel, Wegi A. Wuddineh, Mitra Mazarei, Geoffrey B. Turner, Robert W. Sykes, Stephen R. Decker, Mark F. Davis, Neal Stewart

Plant Sciences Publications and Other Works

The APETALA2/ethylene response factor (AP2/ERF) superfamily of transcription factors (TFs) plays essential roles in the regulation of various growth and developmental programs including stress responses. Members of these TFs in other plant species have been implicated to play a role in the regulation of cell wall biosynthesis. Here, we identified a total of 207 AP2/ERF TF genes in the switchgrass genome and grouped into four gene families comprised of 25 AP2-, 121 ERF-, 55 DREB (dehydration responsive element binding)-, and 5 RAV (related to API3/VP) genes, as well as a singleton gene not fitting any of the above families. The …

Map Supplements For The Metallic Woodboring Beetles (Coleoptera: Buprestidae) Of Tennessee, William E. Klingeman Iii, Jason A. Hansen, Joshua P. Basham, Jason B. Oliver, Nadeer N. Youssef, Whitney Swink, Christine A. Nalepa, Donna C. Fare, J. Kevin Moulton

Plant Sciences Publications and Other Works

Following compilation of distribution records and seasonal flight activity information for 106 metallic wood-boring beetle (Coleoptera: Buprestidae) species for Tennessee, maps were updated to provide county-level collection notations for 10,543 published records and specimen collections made from 1934 to 2013. County collection tallies across the ecoregions in Tennessee are also presented. Maps for individual species highlight gaps in key geographic areas where specimens have not been collected and can be valuable for future biosurveillance, monitoring and management efforts for these economically and ecologically important insects.

Cassava (Manihot Esculenta Crantz) Tuber Quality As Measured By Starch And Cyanide (Hcn) Affected By Nitrogen, Phosphorus, And Potassium Fertilizer Rates, Ivan Bernardo Cuvaca, Neal Eash, Svetlana Zivanovic, Dayton Mcgregor Lambert, Forbes R. Walker, B. Rustrick

Biosystems Engineering and Soil Science Publications and Other Works

Cassava (Manihot esculenta Crantz) is an important subsistence crop for many poor rural families in Africa. Cassava contains cyanogenic glucosides (linamarin and lotaustralin) which liberate hydrogen cyanide (HCN) during tuber processing. Once liberated, HCN attaches to the processed tuber. Continuous consumption of processed tuber containing high HCN concentration coupled with low protein intake causes Konzo – a paralyzing disorder that impacts children and women of childbearing age. There are ways to reduce HCN concentration during tuber processing; however, this can also reduce the overall starch content in the cassava tuber. A study comprising twenty treatments consisting of different combinations of …

A Short-Term Assessment Of Carbon Dioxide Fluxes Under Contrasting Agricultural And Soil Management Practices In Zimbabwe, Deb O'Dell, Thomas J. Sauer, Bruce B. Hicks, Christian Thierfelder, Dayton M. Lambert, Joanne Logan, Neal S. Eash

Biosystems Engineering and Soil Science Publications and Other Works

Two of the biggest problems facing humankind are feeding an exponentially growing human population and preventing the accumulation of atmospheric greenhouse gases and its climate change consequences. Refined agricultural practices could address both of these problems. The research addressed here is an exploration of the efficacy of alternative agricultural practices in sequestering carbon (C). The study was conducted in Zimbabwe with the intent to (a) demonstrate the utility of micrometeorological methods for measuring carbon dioxide (CO2) exchange between the surface and the atmosphere in the short-term, and (b) to quantify differences in such exchange rates for a variety of agricultural …