Digital Commons Network^™

The Use Of Biological Soil Health Indicators To Quantify The Benefits Of Cover Crops, Alexander Wu

Masters Theses

Soils provide many essential functions that support the world. With a decline in soil health, these functions also decrease in efficiency, and can threaten the health of billions of people around the world. Typically, soil health tests do not use biological indicators, however microbes drive and perform vital functions to increase soil health. One way to increase soil health is through the use of cover crops to reduce soil erosion during fallow periods, increasing soil organic matter, as well as collecting nutrients from soil into their biomass. These cover crops are then terminated through various methods such as herbicides, disk …

Assessing Warm-Season Annual Grasses To Increase Forage Inventory, Andrea Marroquin

Masters Theses

Summers are expected to continue to increase in heat/dryness in the Northeast, causing issues pertaining to forage production during the summer to worsen. Many pastures grow cool season grasses, even during the summer. These grasses enter a dormant period and slowdown in production during the months of July and August, leading to what is referred to as “summer slump”. Some farms grow corn silage during the summer, and while corn silage is a valuable crop, its cultivation often does not support soil biology. This research addresses solutions for both summer slump foraging and more sustainable silage. Summer annuals grow more …

Evaluation Of Semiochemicals For Attractiveness To Multiple Tortricid (Lepidoptera) Pests In Apple Orchards, Ajay P. Giri

Masters Theses

Tortricid moths (Lepidoptera) are known for their outstanding olfaction capabilities that allow them to detect, process, and respond to chemical information emitted by host or non-host plants. Such an ability to filter out odors from the complex mixture to locate their host has allowed researchers and integrated pest management (IPM) practitioners to develop and implement semiochemically-based pest control strategies. The major goal of this study was to evaluate, under field conditions, the response of male and female oriental fruit moth (OFM), codling moth (CM), redbanded leafroller (RBLR) and three lined leafroller (TLLR) to experimental kairomone lures in commercial apple orchards …

Diterpene Synthases Of The Rice Blast Fungus: Phylogenetic Analysis And Biochemical Characterization, Ayousha Shahi

Masters Theses

Plant-pathogenic fungi harbor various specialized metabolites including diterpenoids that function as hormones and virulence factors. The fungus Magnaporthe oryzae is the causal agent of rice blast disease and can infect over 50 grass species. We demonstrate that the rice blast fungus encodes two diterpene synthases that produce normal pimara-8,15-diene and manoyl oxide scaffolds. Phylogenetic analysis of diterpene synthases among rice blast pathotypes showed functional conservation of the two core diterpene synthases amongst all pathotypes and suggests further expansion in select grass species. These insights into the blast fungal terpenome may inform efforts to counteract deleterious phytopathogens in crucial food crops.

The Influence Of Cover Crop Termination Strategies And Supplemental Nitrogen On Sweet Corn Yield And Nitrogen Use Efficiency, Sachina Sunuwar

Masters Theses

Cover crops are instrumental in nutrient management and soil health. A field experiment was conducted from fall 2020 to summer 2021 to evaluate the efficiency of different cover crop termination techniques and supplemental nitrogen on sweet corn yield, ear quality and nitrogen use efficiency. The four termination types are herbicide and disk tillage (HDT), herbicide no-till (HNT), cultivation disk till (CDT), and roller crimped no-till (RCNT). These termination types were each divided into four different nitrogen treatment: 0%, 33%, 67% and 100% of the recommended doses (145 kg haˉ¹). Sweet corn yield was highest and % unfilled tip was lowest …

Songbird-Mediated Insect Pest Control In Low Intensity New England Agriculture, Samuel J. Mayne

Masters Theses

Global agricultural intensification has caused large-scale wildlife declines, but agricultural lands that maintain natural habitats can support healthy wildlife populations and receive significant ecosystem services from these natural communities. However, how on-farm biodiversity results in beneficial ecosystem services is highly variable and is reported to differ among taxa and guilds. One group that has attracted attention for their potential beneficial role in reducing pest abundance are birds. Understanding the role of bird communities and individual species in pest control could be important for managing farms under a low intensity agroecological framework. In New England, farmers are increasingly applying low intensity …

Screening For Binding Partners And Protein-Protein Interactions Of A Fungal Transcription Factor- Xdr1, Nishadi Punsara Gallala Gamage

Masters Theses

Clarireedia spp. (formerly Sclerotinia homoeocarpaF.T. Bennett) is the causal agent dollar spot, the most economically important turfgrass disease impacting golf courses in North America. The most effective strategy for dollar spot control is repeated application of multiple classes of fungicides. However, reliance on chemical application has led to resistance to four classes of fungicides as well as multidrug resistance (MDR). Fungi are known to detoxify xenobiotics, like fungicides, through transcriptional regulation of three detoxification phases: modification, conjugation and secretion. Little is known, however, of the protein-protein interactions that facilitate these pathways. Following next-generation RNA sequencing of Clarireedia spp., a …

The Role Of Low-Molecular Weight Fungal Metabolites In Eutypa Dieback Grapevine Trunk Disease, Dana Sebestyen

Masters Theses

Eutypa dieback, one of several grapevine trunk diseases (GTDs), is of serious concern to the grape industry globally. This disease is caused by the fungus Eutypa lata but it is often seen in consortia growth with Phaeoacremonium minimum and Phaeomoniella chlamydospora. It is vital to understand the mechanisms for how this disease functions to develop control measures to combat it. Brown rot fungi are able to use a complex of low molecular weight (LMW) metabolites to induce a Fenton reaction to deconstruct woody tissue. These metabolites are part of a chelator mediated Fenton (CMF) chemistry that produces reactive oxygen …

Can Volunteers Learn To Prune Trees?, Ryan W. Fawcett

Masters Theses

Volunteer pruning programs are becoming an important tool in helping municipal arborists manage the urban forest. To find if volunteers can learn to prune trees well, the ability of volunteers to prune small trees after receiving training was assessed in three different ways, a written exam, a pruning prescription assessment, and a pruning cut assessment. Volunteers were assigned to either an indoor, lecture-based training or an outdoor, hands-on training session. After the training volunteers were asked to complete a written exam to gauge their understanding of the curriculum. Volunteers were then asked to perform a pruning prescription on small street …

Trait Variation And Long-Term Population Dynamics Of The Invasive Alliaria Petiolata (Garlic Mustard) Across Three Microhabitats In Its Invaded Range, Laura Hancock

Masters Theses

Long-term population dynamics across heterogeneous environments can be a major factor in determining species’ ability to expand their ranges and persist in novel environments. Whether and how the relative performance of populations in different microsites over time impacts invasion into new microsites is poorly understood. Though largely restricted to disturbed semi-shaded microhabitats in its home range, the invasive herb Alliaria petiolata (garlic mustard) successfully invades intact forest understories – a novel microhabitat – in its introduced range, where it is known to impact above and below ground community composition. To test the hypothesis that source-sink metapopulation dynamics may be promoting …

Assessing Stress Tolerance Of Organelle Small Heat Shock Protein Mutants In Arabidopsis Thaliana, Parth Patel

Masters Theses

Molecular chaperones are proteins found in virtually every organism and are essential to cell survival. When plants are heat stressed, they upregulate and downregulate multiple genes, many of which are associated with the heat shock response. Small heat shock proteins (sHSPs) are one class of molecular chaperones that are upregulated during heat shock. They are proposed to act as the first line of defense by binding to heat sensitive proteins and preventing their irreversible aggregation. However, many details of sHSP function remain to be discovered and exactly what proteins they protect is unresolved. In addition to cytosolic sHSPs found in …

Does Invasion Science Encompass The Invaded Range? A Comparison Of The Geographies Of Invasion Science Versus Management In The U.S., Lara Munro

Masters Theses

Biases in invasion science lead to a taxonomic focus on plants, particularly a subset of well-studied plants, and a geographic focus on invasions in Europe and North America. Geographic biases could also cause some branches of invasion science to focus on a subset of environmental conditions in the invaded range, potentially leading to an incomplete understanding of the ecology and management of plant invasions. While broader, country-level geographic biases are well known, it is unclear whether these biases extend to a finer scale and thus affect research within the invaded range. This study assessed whether research sites for ten well-studied …

Processes, Patterns, And Predictions Of Soil Moisture Variation In Upland And Peatland Cranberry Farms In Massachusetts, Rebecca Brennan

Masters Theses

The American Cranberry (Vaccinium macrocarpon Ait.) represents a vital sector of the economy of southeastern Massachusetts. Due to the hydrogeological and edaphic characteristics of peatlands, variations in soil drainage and soil moisture represent major management challenges for growers in Massachusetts. An emerging trend of upland (mineral soil) cranberry farms planted with new hybrid cultivars has the potential to enhance the profitability and long-term viability of cranberry production in Massachusetts. However, sparse data exist on soil moisture characteristics of peatland and upland cranberry farms. The purpose of this research was to elucidate the differences in soil moisture between upland and …

Characterizing The Interaction Between Non-Pathogenic Fusarium Oxysporum And Arabidopsis Thaliana To Determine Beneficial Effects Conferred To The Model Plant Host, Kathryn Isabelle Vescio

Masters Theses

Fusarium oxysporum (Fo) is a soil-borne fungal pathogen that causes vascular wilt disease on a broad range of plants, including agricultural crops and the model plant Arabidopsis thaliana. There are non-pathogenic members of the Fo species complex that confer defense benefits against other pathogens to the host plant, however alteration to the host’s physiology through interaction with one of these strains, Fo47, have not been described. In this study, we aimed to establish the Fo47-A. thaliana interaction and determine if Fo47 reduces disease severity of a pathogenic Fo isolate, Fo5176. Additionally, we sought to use bioinformatics to mine …

Arboriculture Safety Around The World, Jamie Lim

Masters Theses

Arboricultural work is inherently dangerous, with more serious injuries and fatalities than most other professions. Safety standards exist in some jurisdictions, but it is unclear how many standards exist, how they compare to one another, and whether (and how many) jurisdictions share standards. To establish a baseline understanding of these issues, my objectives were to (i) develop a database of existing standards, (ii) identify the most frequently occurring safety topics and (iii) describe similarities and differences in safety topics among standards from different countries. I worked with a variety of contacts and traditional university library resources to identify, obtain, analyze, …

Photosynthesizing The Workplace: A Study In Healthy And Holistic Production Spaces, Kaeli Howard

Masters Theses

Throughout time nature has been a prescribed healer of stress on the human condition. Its vital integration into our daily lives has been proven by scientific evidence. The majority of Americans spend approximately 1/3 of their life working, whatever that job may entail. Therefore, it makes sense that the environments that we spend so much of our life in for work at extremely important to our physical and mental health, however, current workplace models are not acknowledging that. Redefining the workplace to integrate nature would start to change work life in this country and how work itself is viewed.

This …

Garlic Mustard (Alliaria Petiolata) Management Effectiveness And Plant Community Response, Erin Coates-Connor

Masters Theses

The control and eradication of the invasive biennial herb garlic mustard (Alliaria petiolata) and the restoration of invaded forest habitats present important linked challenges to land managers in North America. Removing garlic mustard by hand and by glyphosate herbicide application have both been used as eradication strategies with mixed results. Each method has advantages and disadvantages, but they are rarely compared for effectiveness and community impact across multiple years of management. Some previous studies have shown improvements in species diversity and plant community composition following management, while others have found no differences. To better understand both garlic mustard …

Apple Disease Forecasting Models: When Climate Changes The Rules, Elizabeth W. Garofalo

Masters Theses

With a changing global climate, plant pathologists must understand the impact aberrant weather events may have on the development of plant diseases. Fungal plant infections are largely dependent on temperature and precipitation, climate parameters that are predicted to change more in this century. Venturia inaequalis causes apple scab, one of the most destructive apple diseases of temperate growing regions. Temperature and precipitation drive apple scab infections and forecast models, which guide growers in efficient, effective fungicide applications. In some recent years in the Northeast, these models have failed to accurately predict when ascospores of this fungus are available to cause …

Plants, Parasites, And Pollinators: The Effects Of Medicinal Pollens On A Common Gut Parasite In Bumble Bees, George Locascio

Masters Theses

Declines in several pollinator species are due to a variety of factors, including pathogens. Incorporating pollinator-friendly plant species into wild and agricultural habitats could reduce the stress of pathogens if food sources act medicinally against pathogens. Previous research demonstrated one domesticated sunflower cultivar (Helianthus annuus) can dramatically reduce a gut pathogen (Crithidia bombi) of the common eastern bumble bee, Bombus impatiens. To ascertain the breadth of this medicinal trait, we tested whether pollen from several H. annuus cultivars and four relatives could also reduce C. bombi infections in B. impatiens. We also investigated whether …

Impact Of Oyster Mushroom Mycelium On The Growth Of Kale And Forage Radish, Levi Lilly

Masters Theses

Saprophytic fungi can be paired with companion crops in interplant systems to increase production efficiency. However, fungal species/strain, substrate, and inoculation rate can affect the growth of companion crops. This project investigated the viability of open-field mushroom production by interplanting three strains of Pleurotus ostreatus (Elm A, Elm B, and 8801) with kale (B. oleracea var. acephala) and forage radish (Raphanus raphanistrub sub. sativus), and measured the effect of interplanting on plant yield over two field seasons. In the field, Elm A showed an increase in plant yield at a low inoculation rate and decrease in …

The Impact Of Intraspecific Density On Garlic Mustard Sinigrin Concentration, Mercedes Harris

Masters Theses

Garlic mustard (Alliaria petiolata, Brassicaceae) is a biennial herb that produces glucosinolates, a class of constituent secondary metabolites that defend against herbivores and pathogens allowing it to grow at high densities in invaded regions. The glucosinolate sinigrin is predominant in garlic mustard and aids in its competitiveness as an invasive species. In North America, garlic mustard can grow at high densities and form dense monocultures which may increase its apparency to herbivores and therefore increase its sinigrin production. I measured leaf sinigrin concentration in garlic mustard populations of different densities in the field and in greenhouse experiments to evaluate …

Performance Of Floristic Quality Assessment In Massachusetts Forested Wetlands, Carolyn Gorss

Masters Theses

In order to combat the loss of valuable wetland functions and services, federal, state and tribal governments must have the tools to accurately assess and monitor the condition of wetland ecosystems. One particular method of wetland assessment is Floristic Quality Assessment (FQA), which has been growing in popularity throughout the United States since its creation in the 1970s. FQA relies on vegetative indicators of human disturbance to assess the integrity of an ecosystem. FQA calculations are based on Coefficients of Conservatism (C-scores), professionally-assigned scores ranging from 0-10 that denote a local species' tolerance to anthropogenic disturbance. Despite increasing interest in …

Integrating Cover Crop Mixtures And No-Till For Sustainable Sweet Corn Production In The Northeast, Julie S. Fine

Masters Theses

Fall-planted forage radish (Raphanus sativus L. longipinnatus) cover crops have shown successful weed suppression and recycling of fall-captured nutrients. This research evaluated the nutrient cycling and weed suppressive benefits of forage radish cover crop mixtures to develop an integrated system for no-till sweet corn (Zea mays L. var rugosa) production that improves crop yield and soil health. Treatments included forage radish (FR), oats (Avena sativa L.) and forage radish (OFR), a mixture of peas (Pisum sativum subsp arvense L.), oats and forage radish (POFR), and no cover crop control (NCC). Subplots were assigned to …

Uncovering Tasselsheath3. A Genomic And Phenotypic Analysis Of A Maize Floral Mutant., Thompson Zhang

Masters Theses

In the modern era, maize has become the most successful crop grown in the United States. According to the USDA over 90 million acres of land are planted to corn and 96.2% of the U.S feed grain production is made up of the cereal. Part of the success of maize is due to its floral architecture, and its pollination technique in which the flower opens, exposing stamens containing pollen into the air. A unique organ called the lodicule functions as a release mechanism, forcing the flower to open. Lodicules from grasses and eudicot petals are homologous, yet there is little …

Extractable And Non-Extractable Polyphenols From Apples: Potential Anti-Inflammatory Agents, Makenzi Gennette

Masters Theses

With diet being such a huge factor in the development of diseases, emerging research has supported that apple consumption is a promising candidate for disease prevention due to the high phenolic content it possesses. These polyphenols can be found in two forms: extractable polyphenols (EP) and non-extractable polyphenols (NEP). Polyphenols have been shown to have strong anti-inflammatory and anti-oxidant properties, but up until this point, most researchers focus on EP fractions, while NEP are neglected. After the EP extraction using acetone and acetic acid (99:1) from the Apple Boost powder, three additional extraction methods were conducted on the remaining powder …

Investigation Of Cytochrome P450 Monooxygenases In S. Homoeocarpa For Chlorothalonil Biotransformation, Robert Green

Masters Theses

Sclerotinia homoeocarpa (F.T. Bennett) is one of the most economically important pathogens on high amenity cool-season turfgrasses where it causes dollar spot. Due to decades of over-reliance and repeated chemical treatments, S. homoeocarpa has developed resistance and insensitivity to multiple classes of fungicides. To understand the genetic mechanisms of fungicide resistance, the whole genomes of two strains with varying resistance levels to fungicides, were sequenced. In unpublished data (Sang et al.), a RNA-sequencing analysis revealed three CYP450s that were validated to play a functional role in S. homoeocarpa’s resistance against different fungicide classes. We also identified CYP450 metabolic action …

Comparative Transcriptome Analysis Of Wild Tomato Species During Fruit Development, Altynay Zhanayeva

Masters Theses

Fleshy fruits in different species can display large variation in color. A link between fruit color and seed dispersal success is suggested by previous studies showing that high intensity of fruit color increases the visitation rate in seed-dispersing birds. Wild tomato species (Solanum spp.) are excellent model organisms for research on genetic basis of differential fruit color development during the ripening process. Despite polymorphism in fruit color, all tomato species have yellow flowers due to accumulation of carotenoid pigments, which suggests that the carotenoid pathway is intact. Thus, regulatory changes controlling enzymes activity during fruit maturation are likely …

Investigate The Interactions Between Silver Nanoparticles And Spinach Leaf By Surface Enhanced Raman Spectroscopic Mapping, Zhiyun Zhang

Masters Theses

Owing to their increasing application and potential toxicity, engineered nanoparticles (ENPs) have been considered as a potential agricultural contaminant that may pose unknown risk to human beings. However, many techniques require invasive and complicated sample preparation procedures to detect and characterize engineered nanomaterials in complex matrices. In the first part of this thesis, we present a non-destructive and label-free approach based on surface enhanced Raman spectroscopic (SERS) mapping technique to qualitatively detect and characterize gold nanoparticles (AuNPs), on and in spinach leaves in situ. We were able to detect the clearly enhanced signals from AuNPs at 15 to 125 nm …

Iron Signaling In Arabidopsis Thaliana, Celina Abundis

Masters Theses

Iron is among the essential micronutrients for all living organisms and is a cofactor for many cellular redox reactions. Although iron is a highly abundant metal element found in the earth’s crust, it is also a limiting factor in plant development when it is present as insoluble ferric oxides. Plants have evolved two strategies to acquire soluble iron referred to as Strategy I and Strategy II. Our lab has focused on the Arabidopsis thaliana double mutant ysl1ysl3. The mutants display a chlorotic phenotype and are unable to correctly respond to iron deficiency.

Grafting is a common method for joining …

Understory Plant Community Structure In Forests Invaded By Garlic Mustard (Alliaria Petiolata), Jason Aylward

Masters Theses

ABSTRACT

UNDERSTORY PLANT COMMUNITY STRUCTURE IN FORESTS INVADED BY GARLIC MUSTARD (ALLIARIA PETIOLATA)

MAY 2016

JASON ALLEN AYLWARD, B.S., PAUL SMITH’S COLLEGE

M.S. UNIVERSITY OF MASSACHUSETTS AMHERST

Directed by: Professor Kristina Stinson

Plant invasions represent a significant threat to the structure and function of natural ecosystems. Garlic mustard (Alliaria petiolata) has been identified as a threat to native communities mostly through small-scale studies and focused experiments. In this in situ observational study I examined the effects of garlic mustard invasion on species composition across multiple sites by comparing plant diversity and composition in invaded and adjacent …