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Identification Of Root-Knot Nematodes (Meloidogyne Spp.) Of Arkansas Using Molecular Diagnostics, Churamani Khanal
Identification Of Root-Knot Nematodes (Meloidogyne Spp.) Of Arkansas Using Molecular Diagnostics, Churamani Khanal
Graduate Theses and Dissertations
Root-knot nematodes (Meloidogyne spp.) are highly-adaptable, obligate plant parasites distributed worldwide. In addition, root-knot nematodes are an economically important genus of plant-parasitic nematodes. Meloidogyne incognita, M. arenaria, M. javanica, M. hapla and M. graminis have been reported from Arkansas during 1964 to 1994. Previous identifications were based primarily on morphological characters and host differentials. In this study, identification using molecular diagnostics methods was performed to identify Meloidogyne species present in Arkansas. A total of 106 soil and root samples from 36 of the 75 counties were collected and processed to obtain root-knot nematodes. Polymerase chain reaction (PCR) was performed …
Incorporating Molecular Identification Of Meloidogyne Spp. Into A Large-Scale Regional Nematode Survey, Thomas O. Powers, P. G. Mullin, T. S. Harris, L. A. Sutton, R. S. Higgins
Incorporating Molecular Identification Of Meloidogyne Spp. Into A Large-Scale Regional Nematode Survey, Thomas O. Powers, P. G. Mullin, T. S. Harris, L. A. Sutton, R. S. Higgins
Department of Plant Pathology: Faculty Publications
A regional nematode survey of potato fields was conducted in the central United States during 2002 and 2003. The survey encompassed seven states and included a morphological and molecular examination of nematodes of regulatory concern from 1,929 soil samples. No regulated pest species were recovered during this survey. Meloidogyne juveniles extracted from soil were identified by mitochondrial and 18S ribosomal molecular markers. Eighty-two DNA sequences representing the two marker regions for Meloidogyne species were submitted to GenBank to facilitate evaluation of marker variability. Sufficient 18S variation was observed among some Meloidogyne species to aid in identification; however, nucleotide sequence from …
Identification Of Single Meloidogyne Juveniles By Polymerase Chain Reaction Amplification Of Mitochondrial Dna, T. S. Harris, L. J. Sandall, Thomas O. Powers
Identification Of Single Meloidogyne Juveniles By Polymerase Chain Reaction Amplification Of Mitochondrial Dna, T. S. Harris, L. J. Sandall, Thomas O. Powers
Department of Plant Pathology: Faculty Publications
Polymerase chain reaction (PCR) was used to amplify a specific 1.8-kb sequence of mitochondrial DNA from single juveniles and eggs from 17 populations of Meloidogyne incognita, M. hapla, M. javanica, and M. arenaria. Approximately 2 μg amplified product were produced per reaction. Restriction digestion of the amplified product with HinfI permitted discrimination of clonal lineages of the four species. Meloidogyne javanica, however, could not be separated from M. hapla by the enzymes used in these experiments. Various amplification conditions and nematode lysis procedures were examined in order to optimize the speed and quality of …
Estimation Of Genetic Divergence In Meloidogyne Mitochondrial Dna, Thomas O. Powers, Laurie J. Sandall
Estimation Of Genetic Divergence In Meloidogyne Mitochondrial Dna, Thomas O. Powers, Laurie J. Sandall
Department of Plant Pathology: Faculty Publications
Restriction fragments from purified mitochondrial DNA can be readily detected following rapid end-labeling with [α-32P] nucleoside triphosphates and separation by gel electropboresis. Mitochondrial DNA from 12 populations of Meloidogyne species was digested with 12 restriction enzymes producing more than 60 restriction fragments for each species. The mitochondrial genome of M. arenaria is the most genetically distinct of the four species compared. M. arenaria shows approximately 2.1-3.1% nucleotide sequence divergence from the mitochondrial genomes of M. javanica, M. incognita, and M. hapla. Among the latter three species, interspecific estimates of sequence divergence range from 0.7 to …
Species-Specific Restriction Site Polymorphism In Root-Knot Nematode Mitochondrial Dna, Thomas O. Powers, E. G. Platzer, Bradley C. Hyman
Species-Specific Restriction Site Polymorphism In Root-Knot Nematode Mitochondrial Dna, Thomas O. Powers, E. G. Platzer, Bradley C. Hyman
Department of Plant Pathology: Faculty Publications
Research was initiated to physically characterize the mitochondrial genomes of several Meloidogyne spp. and host-races, to address questions regarding their systematics and dispersal, and to assess the possibility of developing molecular diagnostics for these nematodes. Techniques were developed for purification and rapid detection of mitochondrial DNA from root-knot nematodes. Mitochondrial DNAs among Meloidogyne spp. were demonstrated to exhibit extensive divergence. The potential for using the rapidly diverging mitochondrial genomes as a diagnostic assay for M. incognita, M. hapla, M. arenaria, and M. javanica is discussed.