Digital Commons Network^™

Tree Establishment On Post-Mining Waste Soils: Species, Density, And Mixture Effects, Degi Harja Asmara, Suzanne Allaire, Meine Van Noordwijk, Damase P. Khasa

Aspen Bibliography

Tree establishment to restore degraded boreal post-mining lands is challenged by low soil productivity, a harsh microclimate, and potentially high contaminant levels. The use of mixed vegetation can facilitate the microclimate but increase competition for soil resources. A statistical accounting of plant–plant interactions and adaptation to multispecies conditions is hard to achieve in field experiments; trials under controlled conditions can distinguish effects of planting density and species interactions in the early stages of plant establishment. A greenhouse trial was established in containers (“mesocosms”) with waste rock or fine tailings from gold mines. Pregerminated (1-week-old) seedlings (Alnus viridis subsp. crispa …

Identification And Management Of Scotch Thistle (Onopordum Acanthium L.) In Pastures, Rangelands, And Non-Crop Settings, Cody Zesiger, Jacob Hadfield, Kalen Taylor, Corey Ransom

All Current Publications

Scotch thistle (Onopordum acanthium) is an invasive species native to Eurasia. It was likely introduced into North America during the late 19th century (Young & Evans, 1969). Due to the plant’s size and prickles, a stand can damage pasture productivity, ruin campsites, or make trails nearly impassable. The thistle also outcompetes desirable plants and greatly reduces forage use by large animals. Since not all thistles are related or alike, it is essential to correctly identify Scotch thistle before making management decisions. This fact sheet provides information about identification, lifecycle and distribution, and management.

Identifying And Managing Dyer's Woad (Isatis Tinctoria) In Pastures, Rangelands, And Non-Crop Settings, Cody Zesiger, Jacob Hadfield, Corey Ransom

All Current Publications

Dyer's woad (Isatis tinctoria) was introduced into Utah during the mid-nineteenth century as a source of indigo dye. The plant escaped cultivation and has spread across rangelands, foothills, and other sites throughout the Intermountain West. This fact sheet provides information about identifying dyer's woad and its lifecycle, distribution, and management in pastures, rangelands, and non-crop settings. It includes information about using appropriate herbicides to control dyer's woad and how to apply them.

Spatial And Temporal Variation Of Epigaeic Beetle Assemblages (Coleoptera, Carabidae, Staphylinidae) In Aspen-Dominated Mixedwood Forests Across North-Central Alberta, H. E. James Hammond, Sergio García-Tejero, Greg R. Pohl, David W. Langor, John R. Spence

Aspen Bibliography

Epigaeic beetle assemblages were surveyed using continuous pitfall trapping during the summers of 1992 and 1993 in six widely geographically distributed locations in Alberta’s aspen-mixedwood forests prior to initial forest harvest. Species composition and turnover (β-diversity) were evaluated on several spatial scales ranging from Natural Regions (distance between samples 120–420 km) to pitfall traps (40–60 m). A total of 19,885 ground beetles (Carabidae) representing 40 species and 12,669 rove beetles (non-Aleocharinae Staphylinidae) representing 78 species was collected. Beetle catch, species richness, and diversity differed significantly among the six locations, as did the identity of dominant species. Beetle species composition differed …

Aconitum Lycoctonum L.: Phenolic Compounds And Their Bioactivities, Erna Karalija, Adisa Paric, Sabina Dahija, Renata Besta Gajevic, Sanja Cavar Zeljkovic

Poisonous Plant Research (PPR)

The very first report on the phenolic composition of aerial parts of Aconitum lycoctonum L., a species belonging to the toxic Aconitum genus, is presented here. Aerial parts were subjected to the extraction with four different solvents and analyzed via LC-MS/MS for the content of phenolic acids and flavonoids. Furthermore, isolated extracts were tested for antimicrobial and antioxidant activities. Ethanolic extracts of both flowers and vegetative parts (leaves and stems) were found to be the richest in the phenolic compounds, following the water extracts. Ethanolic extract of flowers was very rich in flavonoid apigenin, while high levels of salicylic and …

Splitting The Difference: Heterogeneous Soil Moisture Availability Affects Aboveground And Belowground Reserve And Mass Allocation In Trembling Aspen, Ashley T. Hart, Morgane Merlin, Erin Wiley, Simon M. Landhäusser

Aspen Bibliography

When exploring the impact of resource availability on perennial plants, artificial treatments often apply conditions homogeneously across space and time, even though this rarely reflects conditions in natural systems. To investigate the effects of spatially heterogeneous soil moisture on morphological and physiological responses, trembling aspen (Populus tremuloides) saplings were used in a split-pot experiment. Following the division of the root systems, saplings were established for a full year and then subjected to either heterogeneous (portion of the root system exposed to non-lethal drought) or homogeneous (whole root system exposed to non-lethal drought or well-watered) treatments. Above- and belowground …

Maples In The Landscape, Sheriden M. Hansen, Jaydee Gunnell, Andra Emmertson

All Current Publications

Maple trees (Acer sp.) are a common fixture and beautiful addition to Utah landscapes. There are over one hundred species, each with numerous cultivars (cultivated varieties) that are native to both North America and much of Northern Europe. Trees vary in size and shape, from small, almost prostrate forms like certain Japanese maples (Acer palmatum) and shrubby bigtooth maples (Acer grandidentatum) to large and stately shade trees like the Norway maple (Acer platanoides). Tree shape can vary greatly, ranging from upright, columnar, rounded, pyramidal to spreading. Because trees come in a range …

Designing An Optimal Lighting Fixture For Extraterrestrial Crop Growth: Integrating Efficacy And Photobiology, Paul Kusuma

Utah Space Grant Consortium

Extraterrestrial crop growth will require the development of technologies that provide photons to drive photosynthesis. Light-emitting diode (LED) technology is the likely technology of choice due to 1) its inherent flexibility, and 2) its high efficiency. Here we describe two important considerations for the optimization of this system: photon efficacy (μmol of photons produced per joule of input electrical energy) and spectral effects on plant growth and development. With these two considerations, we suggest the design of an LED fixture for extraterrestrial crop growth that contains a 5:10:55:30 ratio of blue, green, red, and far-red photons (respectively). This would be …

Chloroplast Genomes In Populus (Salicaceae): Comparisons From An Intensively Sampled Genus Reveal Dynamic Patterns Of Evolution, Jiawei Zhou, Shuo Zhang, Jie Wang, Hongmei Shen, Bin Ai, Wei Gao, Cuijun Zhang, Qili Fei, Daojun Yuan, Zhiqiang Wu, Luke R. Tembrock, Sen Li, Cuiha Gu, Xuezhu Liao

Aspen Bibliography

The chloroplast is one of two organelles containing a separate genome that codes for essential and distinct cellular functions such as photosynthesis. Given the importance of chloroplasts in plant metabolism, the genomic architecture and gene content have been strongly conserved through long periods of time and as such are useful molecular tools for evolutionary inferences. At present, complete chloroplast genomes from over 4000 species have been deposited into publicly accessible databases. Despite the large number of complete chloroplast genomes, comprehensive analyses regarding genome architecture and gene content have not been conducted for many lineages with complete species sampling. In this …

Interactive Effects Of Soil And Browsing On Big Sagebrush: Implications For Restoration Success, Kyle Nehring

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Heterogeneity in landscape conditions (e.g., soil types) precludes a “one size fits all” management strategy across large landscapes. New management approaches that explicitly account for heterogeneous landscapes (and the variable conditions therein) will be required to maintain habitat quality. In particular, we require an improved mechanistic understanding of how the outcomes of conservation and restoration actions are contingent upon a) contextual abiotic factors (e.g., moisture availability mediated by soils and precipitation) and b) their interactions with biotic factors (e.g., browsing wildlife).

We propose to answer fundamental questions about how big sagebrush (Artemisia tridentata), the foundational species for sagebrush …

Conserving Water Through Modular Planting Design: Water-Wise Templates For Ogden's Residential Front Yard Landscapes, Jessica Clements

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Due to the arid climate of the Wasatch front and the projected population growth in the next thirty years, water conservation is essential. Consequently, because the landscape consumes 60% of Utah residences’ purified drinking water, water-wise landscaping needs to be a priority. This thesis creates water-wise landscape templates that can be applied to the front yards of Ogden rental properties using a modular planting method. This study determines best practices by researching topics such as water-wise plants for Northern Utah, templates utilized in other areas, modular planting, and existing organizations with similar goals. This results in a user-friendly guide that …

Mechanisms Of Overyielding And Coexistence In Diverse Tallgrass Prairie Communities, Leslie E. Forero

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Plants compete for the same basic nutrient and water resources. According to the competitive exclusion principle, when a substantial overlap in resource pools exists, the best competitor for resources should drive all other species to extinction. The ability for plants to coexist in violation of the competitive exclusion principle is the “biodiversity paradox”. Coexistence is actually beneficial for plants: as species diversity increases, you typically see increases in plant biomass production (known as the biodiversity-productivity relationship). The mechanisms behind coexistence and the biodiversity-productivity relationship remain an ecological mystery. One hypothesis is that plants obtain water and nutrients from different places …

Fatty Acid Composition Of Forages And Their Effect On The Fatty Acid Composition In Beef Cattle, Britney G. Allen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study focused on how diet changes the rumen microbiome in the cattle and the effects of that on the long chain fatty acids (LCFA) by microbes in the rumen, and on the short chain fatty acids (SCFA) these microbes produce from feed carbohydrates like fiber and starch. The abundance of bacteria belonging to the phyla Tenericutes and Proteobacteria increased in response to high-fiber or high-starch diets, respectively. The production of two SCFA was positively correlated with the presence of increased Tenericutes (acetate) and Proteobacteria (propionate). A greater acetate to propionate ratio is associated with elevated production of enteric methane …

Innovative Water Management Using Advanced Irrigation Systems And Biochar, Jonathan A. Holt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Two approaches to water optimization in agriculture are to increase soil water retention and improve the efficiency of irrigation. A soil amendment that has received attention for its ability to increase soil water retention is biochar, the remaining biomass after high C materials have been pyrolyzed (burned with limited oxygen and heat). Two studies were conducted at a total of 10 site-years in Utah from 2018 to 2020 to evaluate how wood biochar influences the productivity and crop quality of irrigated alfalfa (Medicago Sativa L.), corn (Zea mays L.), and wheat (Triticum L.), along with soil water tension. One study …

Seeding Rate, Herbicide, And Irrigation Effects On Spring-Seeded Oat-Alfalfa Companion Crops, Carson D. Roberts

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Small grain companion crop seeding rate recommendations for alfalfa (Medicago sativa L.) establishment are dated and inconsistent, and how a small grain companion crop seeding rates should be adjusted at different moisture levels is unknown. A study was conducted to provide clarity about oat (Avena sativa L.) companion crop seeding rates that maximize weed suppression and forage yield and minimize the effect on alfalfa stand establishment. This experiment considered oat companion crop seeding rates at various irrigation levels. Companion crop treatments consisted of oats sown at 89, 45, 22, 10, and 0 (with and without herbicide) kg ha …

Compost And Cover Crop Effects In Dryland Organic Wheat, Michael D. Deakin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Producers of dryland organic wheat (Triticum aestivum L.) in the western USA struggle to maintain adequate soil fertility due to the high cost of organic fertilizers and concerns over moisture use of cover crops. Low soil fertility results in decreased wheat yield and quality, and increased year-to-year variability in yield and quality based on weather. This study was conducted to measure the effects of, and interactions between, cover crop mixes and a one-time compost application on soil health and winter wheat yield and quality. The study was located on three adjacent certified organic wheat farms near Snowville, UT, each …

Pando's Lessons: Restoration Of A Giant Aspen Clone, Paul C. Rogers, Jody Gale, Darren Mcavoy

Aspen Bibliography

A 106 acre (43 ha) aspen clone lives in the Fishlake National Forest in south-central Utah. Clones are comprised of multiple aspen stems, called ramets, which are genetically identical. This particular colony of ramets was named “Pando” (Latin for “I spread”) by researchers believing it to be the largest living organism by mass on earth. Recently, forest managers have noted a rapid dying of mature stems without recruitment of younger trees. This unsustainable situation has galvanized restoration efforts at Pando. Human interventions caused this imbalance; restoration will rely on protection, monitoring, and innovation. As a laboratory, this forest icon may …

Detection Of European Aspen (Populus Tremula L.) Based On An Unmanned Aerial Vehicle Approach In Boreal Forests, Anton Kuzmin, Lauri Korhonen, Sonja Kivinen, Pekka Hurskainen, Pasi Korpelainen, Topi Tanhuanpää, Matti Maltamo, Petteri Vihervaara, Timo Kumpula

Aspen Bibliography

European aspen (Populus tremula L.) is a keystone species for biodiversity of boreal forests. Large-diameter aspens maintain the diversity of hundreds of species, many of which are threatened in Fennoscandia. Due to a low economic value and relatively sparse and scattered occurrence of aspen in boreal forests, there is a lack of information of the spatial and temporal distribution of aspen, which hampers efficient planning and implementation of sustainable forest management practices and conservation efforts. Our objective was to assess identification of European aspen at the individual tree level in a southern boreal forest using high-resolution photogrammetric point cloud …

Prescribed Fire Alters Structure And Composition Of A Mid-Atlantic Oak Forest Up To Eight Years After Burning, Cody L. Dems, Alan H. Taylor, Erica A. H. Smithwick, Jesse K. Kreye, Margot W. Kaye

Aspen Bibliography

Background

Prescribed fire in Eastern deciduous forests has been understudied relative to other regions in the United States. In Pennsylvania, USA, prescribed fire use has increased more than five-fold since 2009, yet forest response has not been extensively studied. Due to variations in forest composition and the feedback between vegetation and fire, Pennsylvania deciduous forests may burn and respond differently than forests across the eastern US. We measured changes in forest structure and composition up to eight years after prescribed fire in a hardwood forest of the Ridge and Valley region of the Appalachian Mountains in central Pennsylvania.

Results

Within …

Mancha Anular Necrótica Y Mancha De Verano Del Césped, Claudia Nischwitz, Kelly Kopp, Jaydee Gunnell, Kent Evans, Erin Frank, Celina Wille

All Current Publications

La mancha anular necrótica y mancha de verano del césped son enfermedades fúngicas que infectan los pastos de estación fría y causan síntomas similares. Los síntomas comienzan como un crecimiento deficiente y marchitez de las hojas, que se convierten en parches marrones obvios que varían de 1 a 3 pies de diámetro. Debido a los síntomas similares que se observan en la infección por ambos patógenos, se necesita un microscopio para diagnosticar adecuadamente cada enfermedad. El manejo de ambas enfermedades puede ser difícil y frecuentemente requiere una combinación de técnicas de control cultural, químico y varietal.

In Silico Screeing Of Natural Compounds As Novel Drug Targets For Treatment Of Multiple Myeloma, Rousselene Larson

Student Research Symposium

In Silico Screening of Natural Compounds as Novel Drug Targets for The Treatment of Multiple MyelomaRousselene Larson1 2, Naveen Duhan1, and Rakesh Kaundal1 2 *1Department of Plants, Soils, and Climate, College of Agriculture and Applied Sciences; 2Bioinformatics Facility, Center for Integrated BioSystems; Utah State University, Logan, UT 84322 USA* corresponding author (e-mail: rkaundal@usu.edu)Telephone: +1 (435) 797-4117Fax: +1 (435) 797-2766Abstract: Multiple Myeloma (MM) is an incurable hematological malignancy cancer characterized by excessive clonal plasma cell proliferation in the bone marrow. In the United States, MM is the second most prevalent type of cancer that affects about 4 in 100,000 Americans. Toxicity …

Genomic Prediction Of Salinity Stress Tolerance In Maize (Zea Mays L.), Vishal Singh

Student Research Symposium

Maize is the largest crop in the world in terms of production. Utah, maize is a potential fodder crop. With increasing climate change, soil salinity is also increasing worldwide. Soil salinity is very detrimental to plants' growth and development and crop production. For a fodder crop, plant biomass is an important trait, and maize biomass is adversely affected by salinity stress, especially at the seedling stage. A Selection of salt-tolerant breeding material is a time-consuming process and its complexity is further increased by significant heterogeneity in soil salinity under field based evaluation. Genomic prediction is an emerging tool that can …

Day Versus Night Irrigation Loss From Sprinkler Irrigation Of Urban Crops, Samikshya Pyakurel

Student Research Symposium

Nighttime irrigation is a widespread strategy to conserve water, as it reduces wind drift and evaporation loss (WDEL). However, daytime sprinkler irrigation may also conserve water by lowering the temperature and increasing the humidity of crop microclimates, thereby reducing evapotranspiration (ET). Therefore, the objectives of this study include: 1) quantify whether a water savings exists between day and night irrigation with a water balance approach, 2) analyze the microclimate effects by irrigation timing to determine any changes to WDEL and evaporative demand, and 3) assess the quality and yield response of two urban crops. In 2019-21, we established 12 field …

Isolation & Identification Of Bacteria From The Rhizosphere Of Native Plant, Ceanothus Velutinus, And Their Potential As Biofertilizers, Katherine Webb, Hayden Johns

Student Research Symposium

Due to the ever-changing climate, plants face stressors that limit their growth. Therefore it is vital to find new ways to protect plants from biotic and abiotic stressors such as pathogen infection, drought, heavy metal poisoning, and salinity. With an increasing population, limiting the effects of stress on plant growth and development for agriculture is vital. One approach to this is focusing on beneficial plant-microbe interaction, such as plant growth-promoting rhizobacteria (PGPR). These bacteria are found in the rhizosphere- the soil that is attached to the roots of a plant. Various PGPRs share a symbiotic relationship with plants and help …

Comparative Study Of The Microbiome Of The Native Plant Ceanothus Velutinus (Snowbrush) From Different Locations And Greenhouse Studies, Jyothsna Ganesh

Student Research Symposium

Climatic change is one of the biggest threats to the ecosystem and biodiversity by enhancing environmental stresses. Environmental stresses such as biotic and abiotic stresses affect plant health and reduce crop production. The rhizosphere microbiome of a plant plays a significant role in a plant's defense against various biotic and abiotic stresses. In this study, we are investigating the microbiome diversity of bulk soil, rhizosphere, and endosphere of Ceanothus velutinus, snowbrush. Ceanothus is an evergreen native plant that is usually found in dry areas and thrives well in harsh conditions. The snowbrush samples were collected from different locations 1920m, 1950m, …

Microbial Community Of The Rhizosphere Of Ceanothus Velutinus Improves The Plant's Growth And Development Under Greenhouse Conditions, Jyothsna Ganesh

Student Research Symposium

Climatic change-induced environmental stresses affect crop production. Drought is such a stress which affect crop production and landscaping adversely. Native plants are great for low water use landscaping and can adapt to the natural environment. USU Center for Water-Efficient Landscaping has released a list of native plants that can be used for this purpose. This study focuses on a native plant Ceanothus velutinus (snowbrush) which is an evergreen plant native to western North America. It thrives well in harsh conditions and can act as ornamental plant in low water use landscaping but is difficult to propagate under landscape conditions. Here, …

Transgenic Expression Of Prunus Persica Salt Overly Sensitive 2 (Ppsos2) In Atsos2 Mutant Imparts Salt Tolerance In Arabidopsis, Vishal Singh

Student Research Symposium

Salinity is one of the major environmental stresses that affect crop growth and productivity. Almond crop has a great potential for Utah as a cash crop and salinity is one of the stresses affecting its growth and yield. Although almond trees are sensitive to salt stress, salinity-tolerant rootstocks can play a significant role in sustaining crop production in semiarid areas. Salinity tolerance has a complex mechanism with many genes acting in different pathways. Understanding the role of potential candidate genes is an important aspect of genomics assisted improvement of stress tolerance. In this study, functional complementation of the Prunus persica …

Deepnec: A Novel Alignment-Free Tool For The Characterization Of Nitrification-Related Enzymes Using Deep Learning, A Step Towards Comprehensive Understanding Of The Nitrogen Cycle, Naveen Duhan

Student Research Symposium

Abstract: Nitrification is an important microbial two-step transformation in the global nitrogen cycle, as it is the only natural process that produces nitrate within a system. The functional annotation of nitrification-related enzymes has a broad range of applications in metagenomics, agriculture, industrial biotechnology, etc. The time and resources needed for determining the function of enzymes experimentally are restrictively costly. Therefore, an accurate genome-scale computational prediction of the nitrification-related enzymes has become much more important.In this study, we developed an alignment-free computational approach to determine the nitrification-related enzymes from the sequence itself. We propose deepNEC, a novel end-to-end feature selection and …

Pyseqrna: An Automated Python Package For Advanced Rna Sequencing Data Analysis And Annotation, Naveen Duhan

Student Research Symposium

Abstract: With the advent of Next-Generation Sequencing (NGS) technologies, numerous data is being generated every day, however, streamlined analysis remains a big hurdle to efficiently use the technology. A large number of algorithms, statistical methods, and software tools have been developed in recent years to perform the individual analysis steps of various NGS applications. Some NGS applications data analysis procedures are therefore very complex, requiring several program tools to be downloaded for their various processing steps. There is a significant room for the development of scalable computing environments that link the individual software components to automated workflows to efficiently and …

Translating -Omics Big Data: Comprehensive Understanding Of Host-Pathogen Interactions To Control Bacterial Blight In Alfalfa Using Computational Approaches, Raghav Kataria

Student Research Symposium

Plant infectious diseases are a major threat to the crops, owing to economic losses to the agriculture industry worldwide. Molecular interactions between the host and pathogen play a critical role in understanding the basis of pathogenesis. Majority of the Pseudomonas syringae strains are known to cause frost injury in plants, amongst which, P. syringae pv. syringae ALF3 is asserted to be a causal organism of bacterial stem blight in Medicago sativa (alfalfa). We elucidated the genome-scale host-pathogen interactions (HPIs) between alfalfa and P. syringae using two intense computational approaches: interolog (homology-based) and the domain-based method (based on 3D structure of …