Digital Commons Network^™

Quantifying The Ecological Effects Of Salix Fragilis On Riparian Habitat In Kittitas County, Washington, Landon Shaffer

All Master's Theses

Invasive species threaten plant community structure and function globally. Riparian areas, the zone near streams where water influences vegetation, are especially sensitive to invasive species colonization, suffering large-scale shifts in community composition. Salix fragilis (crack willow) is a nonnative riparian species abundant in the lower elevation tributaries of central Washington. Some speculate whether this willow should be listed as invasive in Washington, despite a lack of regional supporting evidence. I studied riparian communities dominated by either S. fragilis or native species in the Kittitas Valley and measured biodiversity, quantified differences in solar attenuation, and compared leaf decomposition rates to learn …

Hot But Not Dry: Modest Changes In Water Relations For An Epiphytic Bromeliad In A Tropical Dry Deciduous Forest, Saúl Hernández-Robinson, Eric A. Graham, Olivia Hernández-González, Roberth Us-Santamaría, José Luis Simá, Fernando Arellano-Martín, José Luis Andrade

All Faculty Scholarship for the College of the Sciences

Premise of research. Epiphytic bromeliads endure intense seasonal environmental changes in the canopy of dry tropical deciduous forests. The analysis of the physiological responses of these epiphytes to environmental changes can be useful in assessing their plasticity, vulnerability, and adaptations to such extreme habitats.

Methodology. We measured microenvironmental variables and water relations for plants of the epiphytic bromeliad Tillandsia brachycaulos in three microhabitats within the canopy of a dry tropical forest. We measured individual plants for seasonal and spatial differences in light, leaf temperature, osmotic potential, cell wall elasticity, and relative capacitance as indications of their physiological responses …

Distribution Of Invasive Plant Species On Debris Cones At Mount Rainier National Park, Shaun Morrison

All Master's Theses

Invasive plant populations within Mount Rainier National Park are a biological and ecological threat to the unique mountain landscape. A better understanding of their distribution and transport within the landscape is needed to improve invasive species monitoring for National Park Service management. This study investigates how invasive plant populations in Stevens Canyon are utilizing the debris cone disturbances and associated geomorphic processes to facilitate movement within the park. Vegetation transects were performed along Stevens Canyon Road (to observe the roadside community composition) and on the debris cone features (to observe species movement from the roadside). These vegetation observations are presented …

Floral Trait Architecture In Crop Sunflower (Helianthus Annuus) Under Drought Conditions, Lauren Segarra

All Master's Theses

Longer and more intense droughts are predicted to become more common in the coming century due to anthropogenic climate change. Drought can reduce crop yield and decrease food security. In order to mitigate the negative effects of drought on crop production, it is important to elucidate the underlying mechanisms that promote drought stress resistance in crop plants. Floral traits impact yield, especially in oilseed crops such as sunflower (Helianthus annuus), but their susceptibility to drought stress is understudied. The goal of this study was to describe the floral trait architecture of H. annuus crop lines under drought versus …

Fire And Road Disturbance Impacts On Forest Plant Species And Seed Rain In Table Mountain Fire Arai, Kittitas County, Washington, Jonathan A. Betz

All Master's Theses

Forest communities are in a constant state of change. Disturbance events can alter the physical landscape and create conditions favorable to some species while negatively impacting others. Fire has been a natural, reoccurring source of disturbance in Pacific Northwest forests. Over the past centuries the fire paradigm has changed in favor of fire suppression. Forest roads permit access provide greater access but further fracture forest community’s continuity. The 2012 Table Mountain Fire and road influence have altered the plant community’s seed rain and vegetation. This study measured dispersed seeds and understory vegetation cover as functions of roads and fire intensity. …

Holocene Fire History Reconstruction Of A Mid-Evaluation Mixed-Conifer Forest In The Eastern Cascades, Washington, Zoe Rushton

All Master's Theses

Fire histories of mid-elevation mixed-conifer forests (MEMC) are uncommon, particularly in the eastern Cascades of Washington. As a result, fire regimes and the effects of 20th century fire suppression in these forests are not well understood. In the summer of 2014 a 7.80 meter-long sediment core was extracted from Long Lake, located approximately 45 km west of Yakima, WA, which exists in a grand fir-dominated mixed-conifer forest. Fire activity for the Long Lake watershed was reconstructed using macroscopic charcoal analysis and pollen analysis was used to reconstruct vegetation change through time. Charcoal results show low fire activity in the early …

Characterizing Low Nutrient Stress Resistance In Crop Sunflowers (Helianthus Annus), Casey Croshaw

All Master's Theses

Historically agriculture has met global food production demands, but abiotic stresses are predicted to decrease crop yield in the context of climate change. In order to prevent losses in crop yield under conditions of increasing environmental stress and to reduce environmental damage from unsustainable farming practices, improvements must be made in crop breeding and bioengineering. However, these improvements require insight into the mechanisms of abiotic stress resistance. In this study, 60 different genetic sunflower (Helianthus annuus) lines were grown in the field under fertilized and unfertilized treatments to assess phenotypic traits associated with low nutrient stress resistance. Sunflowers …

Transgenerational Plasticity Is Sex-Dependent And Persistent In Yellow Monkeyflower (Mimulus Guttatus), Kayla C. Akkerman, Arash Sattarin, John K. Kelly, Alison G. Scoville

Student Published Works

Transgenerational phenotypic plasticity, whereby environmental cues experienced by parents alter the phenotype of their progeny, has now been documented in diverse organisms. Transmission of environmentally determined responses is known to occur through both maternal and paternal gametes, but the underlying mechanisms have rarely been compared. In addition, the persistence of induction over multiple generations appears to vary widely, but has been characterized for relatively few systems. Yellow monkeyflower (Mimulus guttatus) is known to exhibit transgenerational induction of increased glandular trichome production in response to simulated insect damage. Here, we test for differences between maternal and paternal transmission of …

Physiological Variation Of Garry Oak (Quercus Garryana) Seedlings To Drought Stress, Matthew A. Merz

All Master's Theses

The purpose of this study was to determine physiological differences in drought response among Garry oak (Quercus garryana Douglas ex Hook. [Fagaceae]) seedlings that grow in distinct populations in Washington state, in order to aid in restoration efforts by informing growers of the potential differences between the acorn collection sites. Acorns from six Washington populations east of the Cascades, as well as one population from Whidbey Island, were collected and grown in containers under controlled conditions. The plants were assessed with and without moderate and severe drought stress induced by withholding water. The most extreme differences in photosynthetic characteristics …

Applying Wetland Rating Systems To Assess Functions Of Depressional Wetlands Created By A Mass Wasting Feature, Table Mountain, Washington, Thomas S. Wachholder

All Master's Theses

The formation of wetlands in the Swauk Watershed has been primarily controlled by mass wasting events, which includes landslide activity. Landslide activity has been the primary influential process in shaping the landscape where wetland systems have formed on the surface of landslide deposits. The wetland sites used in this study, near the base of Table Mountain, were chosen because they inhabit the same ancient landslide, have the same underlying geology, and vary in aspect and elevation. The elevational gradient of the sites ranges from 1300 – 1600 m and the individual wetlands differ in terms of north- and south-facing aspects. …

Selection On Crop-Derived Traits And Qtl In Sunflower (Helianthus Annuus) Crop-Wild Hybrids Under Water Stress, Birkin R. Owart, Jonathan Corbi, John M. Burke, Jennifer M. Dechaine

All Faculty Scholarship for the College of the Sciences

Locally relevant conditions, such as water stress in irrigated agricultural regions, should be considered when assessing the risk of crop allele introgression into wild populations following hybridization. Although research in cultivars has suggested that domestication traits may reduce fecundity under water stress as compared to wild-like phenotypes, this has not been investigated in crop-wild hybrids. In this study, we examine phenotypic selection acting on, as well as the genetic architecture of vegetative, reproductive, and physiological characteristics in an experimental population of sunflower crop-wild hybrids grown under wild-like low water conditions. Crop-derived petiole length and head diameter were favored in low …

Antimicrobial And Antiinsectan Phenolic Metabolites Of Dalea Searlsiae, Gil Belofsky, Mario Aronica, Eric Foss, Jane Diamond, Felipe Santana, Jacob Darley, Patrick F. Dowd, Christina M. Coleman, Daneel Ferreira

All Faculty Scholarship for the College of the Sciences

Continued interest in the chemistry of Dalea spp. led to investigation of Dalea searlsiae, a plant native to areas of the western United States. Methanol extractions of D. searlsiae roots and subsequent chromatographic fractionation afforded the new prenylated and geranylated flavanones malheurans A–D (1–4) and known flavanones (5 and 6). Known rotenoids (7 and 8) and isoflavones (9 and 10) were isolated from aerial portions. Structure determination of pure compounds was accomplished primarily by extensive 1D- and 2D-NMR spectroscopy. The absolute configurations of compounds 1–5, 7 …

Qtl Architecture Of Reproductive Fitness Characters In Brassica Rapa, Jennifer M. Dechaine, Marcus T. Brock, Cynthia Weinig

All Faculty Scholarship for the College of the Sciences

Background

Reproductive output is critical to both agronomists seeking to increase seed yield and to evolutionary biologists interested in understanding natural selection. We examine the genetic architecture of diverse reproductive fitness traits in recombinant inbred lines (RILs) developed from a crop (seed oil) × wild-like (rapid cycling) genotype of Brassica rapa in field and greenhouse environments.

Results

Several fitness traits showed strong correlations and QTL-colocalization across environments (days to bolting, fruit length and seed color). Total fruit number was uncorrelated across environments and most QTL affecting this trait were correspondingly environment-specific. Most fitness components were positively correlated, consistent with life-history …

Experiments To Measure The Effects Of Timber Harvesting Equipment On Surface Lithic Scatters, Douglas J. Baughman

All Master's Theses

The importance of cultural resource preservation cannot be overstated; however local economies are at least as important. Due to conservative archaeological site protection practices in Region 5 of the United States Forest Service, the economy of Northeastern California is being adversely affected. In an attempt to help the Forest Service make more informed management decisions and improve the Northeastern California economy, I undertook experiments on the effects of timber harvesting on lithic scatters on Modoc National Forest. The experiments involved placement of 225 glass tiles (proxy lithics) in each of three plots subject to vehicle traffic and log dragging by …

A Proposed Mechanism For Nitrogen Acquisition By Grass Seedlings Through Oxidation Of Symbiotic Bacteria, James F. White Jr., Holly Crawford, Mónica S. Torres, Robert Mattera, Ivelisse Irizarry, Marshall Bergen

All Faculty Scholarship for the College of the Sciences

In this paper we propose and provide evidence for a mechanism, oxidative nitrogen scavenging (ONS), whereby seedlings of some grass species may extract nitrogen from symbiotic diazotrophic bacteria through oxidation by plant-secreted reactive oxygen species (ROS). Experiments on this proposed mechanism employ tall fescue (Festuca arundinaceae) seedlings to elucidate features of the oxidative mechanism. We employed 15N₂ gas assimilation experiments to demonstrate nitrogen fixation, direct microscopic visualization of bacteria on seedling surfaces to visualize the bacterial oxidation process, reactive oxygen probes to test for the presence of H₂O₂ and cultural experiments to assess conditions …

Pollination Of Basalt Daisy (Erigeron Basalticus: Asteraceae), Diedra Petrina

All Master's Theses

Erigeron basalticus (basalt daisy) is a rare plant occupying a very restricted range of approximately 52 km² in only two counties (Kittitas and Yakima) in central Washington State. Growing out of the cracks and crevices of basalt columns, the population of E. basalticus is fragmented and confined to its unique niche. The entire population consists of approximately 8,000 individuals.

This study focused on the pollination system of E. basalticus, specifically self-pollination and a determination of the most frequent insect visitors. Erigeron basalticus was determined to be primarily self-incompatible, therefore, pollinators will be important for successful pollination to occur.

A …

Implications Of The Plastid Genome Sequence Of Typha (Typhaceae, Poales) For Understanding Genome Evolution In Poaceae, Mary M. Guisinger, Timothy W. Chumley, Jennifer V. Kuehl, Jeffrey L. Boore, Robert K. Jansen

All Faculty Scholarship for the College of the Sciences

Plastid genomes of the grasses (Poaceae) are unusual in their organization and rates of sequence evolution. There has been a recent surge in the availability of grass plastid genome sequences, but a comprehensive comparative analysis of genome evolution has not been performed that includes any related families in the Poales. We report on the plastid genome of Typha latifolia, the first non-grass Poales sequenced to date, and we present comparisons of genome organization and sequence evolution within Poales. Our results confirm that grass plastid genomes exhibit acceleration in both genomic rearrangements and nucleotide substitutions. Poaceae have multiple structural rearrangements, including …

Seed Invasion Filters And Forest Fire Severity, Tom R. Cottrell, Paul F. Hessburg, Jonathan A. Betz

Biology Faculty Scholarship

Forest seed dispersal is altered after fire. Using seed traps, we studied impacts of fire severity on timing of seed dispersal, total seed rain, and seed rain richness in patches of high and low severity fire and unburned Douglas-fir (Pseudotsuga menziesii) forests in the Fischer and Tyee fire complexes in the eastern Washington Cascades. Unburned plots had the lowest average seed production. The high severity fire patches in the Fischer Fire Complex had a higher total seed production than low severity fire patches of the same complex. At the Tyee Fire Complex, the total seed production for each …

The Complete Plastid Genome Sequence Of Welwitschia Mirabilis: An Unusually Compact Plastome With Accelerated Divergence Rates, Skip R. Mccoy, Jennifer V. Kuehl, Jeffrey L. Boore, Linda A. Raubeson

All Faculty Scholarship for the College of the Sciences

Background

Welwitschia mirabilis is the only extant member of the family Welwitschiaceae, one of three lineages of gnetophytes, an enigmatic group of gymnosperms variously allied with flowering plants or conifers. Limited sequence data and rapid divergence rates have precluded consensus on the evolutionary placement of gnetophytes based on molecular characters. Here we report on the first complete gnetophyte chloroplast genome sequence, from Welwitschia mirabilis, as well as analyses on divergence rates of protein-coding genes, comparisons of gene content and order, and phylogenetic implications.

Results

The chloroplast genome of Welwitschia mirabilis [GenBank: EU342371] is comprised of 119,726 base pairs and exhibits …

Comparative Chloroplast Genomics: Analyses Including New Sequences From The Angiosperms Nuphar Advena And Ranunculus Macranthus, Linda A. Raubeson, Rhiannon Peery, Timothy W. Chumley, Chris Dziubek, H. Matthew Fourcade, Jeffrey L. Boore, Robert K. Jansen

All Faculty Scholarship for the College of the Sciences

Background

The number of completely sequenced plastid genomes available is growing rapidly. This array of sequences presents new opportunities to perform comparative analyses. In comparative studies, it is often useful to compare across wide phylogenetic spans and, within angiosperms, to include representatives from basally diverging lineages such as the genomes reported here: Nuphar advena (from a basal-most lineage) and Ranunculus macranthus (a basal eudicot). We report these two new plastid genome sequences and make comparisons (within angiosperms, seed plants, or all photosynthetic lineages) to evaluate features such as the status of ycf15 and ycf68 as protein coding genes, the distribution …

Effects Of Ultraviolet-B Radiation On Leaf Morphology Of Arabidopsis Thaliana (L.) Heynh. (Brassicaceae), Maria Regina Torres Boeger, Mary E. Poulson

Biology Faculty Scholarship

Reduction of the ozone layer results in the increase in ultraviolet radiation reaching the earth's surface, especially the ultraviolet-B (UV-B). The increase of radiation may induce structural and physiological changes in plants, influencing their growth and development. This paper evaluates the effects of ambient UV-B radiation upon to the leaf morphology of Arabidopsis thaliana developed under controlled conditions. The seeds of A. thaliana grown in environmental chamber, with 300 µmol m^-2s^-1 de photosynthetically active radiation (PAR) with and without 6 kJ m^-2 s^-1 of radiation UV-B_be (UV-B_be; UV-B biologically effective). After 21 …

Methods For Obtaining And Analyzing Whole Chloroplast Genome Sequences, Robert K. Jansen, Linda A. Raubeson, Jeffrey L. Boore, Claude W. Depamphilis, Timothy W. Chumley, Rosemarie C. Haberle, Stacia K. Wyman, Andrew J. Alverson, Riannon Peery, Sallie J. Herman, H. Matthew Fourcade, Jennifer V. Kuehl, Joel R. Mcneal, James Leebens-Mack, Liying Cui

All Faculty Scholarship for the College of the Sciences

During the past decade there has been a rapid increase in our understanding of plastid genome organization and evolution due to the availability of many new completely sequenced genomes. Currently there are 43 complete genomes published and ongoing projects are likely to increase this sampling to nearly 200 genomes during the next five years. Several groups of researchers including ours have been developing new techniques for gathering and analyzing entire plastid genome sequences and details of these developments are summarized in this chapter. The most important recent developments that enhance our ability to generate whole chloroplast genome sequences involve the …

Chloroplast Dna Rearrangements In Campanulaceae: Phylogenetic Utility Of Highly Rearranged Genomes, Mary E. Cosner, Linda A. Raubeson, Robert K. Jansen

All Faculty Scholarship for the College of the Sciences

Background

The Campanulaceae (the "hare bell" or "bellflower" family) is a derived angiosperm family comprised of about 600 species treated in 35 to 55 genera. Taxonomic treatments vary widely and little phylogenetic work has been done in the family. Gene order in the chloroplast genome usually varies little among vascular plants. However, chloroplast genomes of Campanulaceae represent an exception and phylogenetic analyses solely based on chloroplast rearrangement characters support a reasonably well-resolved tree.

Results

Chloroplast DNA physical maps were constructed for eighteen representatives of the family. So many gene order changes have occurred among the genomes that characterizing individual mutational …

Going Beyong The Third Grade Science Kit: An Integrated Thematic Approach, Michele D. Wiederspohn

All Graduate Projects

A project has been developed to aid in the design of a third grade science program and/or to be used as a supplement to any existing third grade science curriculum. The project has been organized into fourteen lesson plans. Each lesson plan includes an overview of the lesson, student learning objectives matched to the Washington State Essential Academic Learning Requirements, activities, a list of required materials, an outline of instruction, and the name of a trade book to compliment the lesson. Current literature and research regarding the topic of integrated curriculum were explored.

Alien Invaders: Envisioning Exotic Species In Florida, Kevin Archer

All Faculty Scholarship for the School of Graduate Studies and Research

No abstract provided.

A Lighter Shade Of Green: Reproducing Nature In Central Florida, Kevin Archer

All Faculty Scholarship for the School of Graduate Studies and Research

No abstract provided.

The Riparian Vegetation Of Swauk Creek, Edward L. Schneider

All Master's Theses

An investigation was made to document the structure and composition of the flora along Swauk Creek, a riparian transect into Central Washington's Cascade Range. Distributions of the major species are discussed and a key has been constructed to facilitate identification of the riparian associations.

The Effects Of Herbicides On Three Soil Inhabiting Blue Green Algal Species, Lee C. Darlington

All Master's Theses

The object of this study was to examine the effects of varying concentrations of 2, 4-D, Dalapon, and Tordon on the growth of several nitrogen-fixing blue-green algal species obtained from soil samples and grown under culture conditions in the laboratory.

A Study Of Puccinia Graminis And Cronartium Ribicola, Duane W. Hughes

Graduate Student Research Papers

It was the purpose of this study (1) to review the literary history of rusts in the United States and in the Northwest in particular, ( 2) to learn where rusts generally are found geographically, (3) to gain further information regarding the etiology of wheat rust (Puccinia graminis tritici), of white pine blister rust (Cronartium ribicola) and to become enlightened on other rusts, (4) to learn ways of controlling the two rusts, black stem rust of wheat and white pine blister rust, and to gain an appreciation of the economic importance of rust prevention.

Tertiary Coniferous Woods Of Western North America, George F. Beck

All Faculty Scholarship for the College of the Sciences

Almost four decades have elapsed since Platen (1908), the German paleobotanist, published his report upon the fossil woods of the western United States. Since then no over-all treatment of these materials has been attempted. although Platen overlooked the Pacific Northwest with its abundance of Tertiary petrified woods. The purpose of this paper is to bring knowledge of the western coniferous woods of the Tertiary up to date. In this effort the writer recognizes that much of this information has been accumulated incidentally in the study of the Russell Petrified Forest series of central Washington, and that it is not as …