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Two-Photon Excitation, Fluorescence Microscopy, And Quantitative Measurement Of Two-Photon Absorption Cross Sections, Fredrick Michael Dearmond

Dissertations and Theses

As optical microscopy techniques continue to improve, most notably the development of super-resolution optical microscopy which garnered the Nobel Prize in Chemistry in 2014, renewed emphasis has been placed on the development and use of fluorescence microscopy techniques. Of particular note is a renewed interest in multiphoton excitation due to a number of inherent properties of the technique including simplified optical filtering, increased sample penetration, and inherently confocal operation. With this renewed interest in multiphoton fluorescence microscopy, comes an increased demand for robust non-linear fluorescent markers, and characterization of the associated tool set.

These factors have led to an experimental …

Confined Photonic Mode Propagation Observed In Photoemission Electron Microscopy, Theodore Stenmark, Robert Campbell Word, Rolf Konenkamp

Physics Faculty Publications and Presentations

Using photoemission electron microscopy (PEEM) we present a comparative analysis of the wavelength dependence of propagating fields in a simple optical slab waveguide and a thin film photonic crystal W1-type waveguide. We utilize an interferometric imaging approach for light in the near-ultraviolet regime where a 2-photon process is required to produce photoelectron emission. The typical spatial resolution in these experiments is < 30 nm. Electromagnetic theory and finite element simulations are shown to be in good agreement with the experimental observations. Our results indicate that multiphoton PEEM is a useful sub-wavelength characterization technique in thin film optics.

Entropy Production And Volume Contraction In Thermostated Hamiltonian Dynamics, John D. Ramshaw

Physics Faculty Publications and Presentations

Patra et al. [Int. J. Bifurcat. Chaos 26, 1650089 (2016)] recently showed that the time-averaged rates of entropy production and phase-space volume contraction are equal for several different molecular dynamics methods used to simulate nonequilibrium steady states in Hamiltonian systems with thermostated temperature gradients. This equality is a plausible statistical analog of the second law of thermodynamics. Here we show that those two rates are identically equal in a wide class of methods in which the thermostat variables z are determined by ordinary differential equations of motion (i.e., methods of the Nosé-Hoover or integral feedback control type). This …

Mixing Times Of Organic Molecules Within Secondary Organic Aerosol Particles: A Global Planetary Boundary Layer Perspective, Adrian M. Maclean, Christopher L. Butenhoff, James W. Grayson, Kelley Barsanti, Jose L. Jimenez, Allan K. Bertram

Physics Faculty Publications and Presentations

When simulating the formation and life cycle of secondary organic aerosol (SOA) with chemical transport models, it is often assumed that organic molecules are well mixed within SOA particles on the timescale of 1 h. While this assumption has been debated vigorously in the literature, the issue remains unresolved in part due to a lack of information on the mixing times within SOA particles as a function of both temperature and relative humidity. Using laboratory data, meteorological fields, and a chemical transport model, we estimated how often mixing times are < 1 h within SOA in the planetary boundary layer (PBL), the region of the atmosphere where SOA concentrations are on average the highest. First, a parameterization for viscosity as a function of temperature and RH was developed for α-pinene SOA using room-temperature and low-temperature viscosity data for α-pinene SOA generated in the laboratory using mass concentrations of ∼ 1000 µg m−3. Based on this parameterization, the mixing times within α-pinene SOA are < 1 h for 98.5 % and 99.9 % of the occurrences in the PBL during January and July, respectively, when concentrations are significant (total organic aerosol concentrations are > 0.5 µg m−3 at the surface). Next, as a starting …

Ion Transport Across Biological Membranes By Carborane-Capped Gold Nanoparticles, Marcin P. Grzelczak, Stephen P. Danks, Robert C. Klipp, Domagoj Belic, Adnana Zaulet, Casper Kunstmann-Olsen, Dan F. Bradley, Tatsuya Tsukuda, Clara ViñAs, Francesc Teixidor, Jonathan J. Abramson, Mathias Brust

Physics Faculty Publications and Presentations

Carborane-capped gold nanoparticles (Au/carborane NPs, 2–3 nm) can act as artificial ion transporters across biological membranes. The particles themselves are large hydrophobic anions that have the ability to disperse in aqueous media and to partition over both sides of a phospholipid bilayer membrane. Their presence therefore causes a membrane potential that is determined by the relative concentrations of particles on each side of the membrane according to the Nernst equation. The particles tend to adsorb to both sides of the membrane and can flip across if changes in membrane potential require their repartitioning. Such changes can be made either with …

An Analysis Of The Optimal Mix Of Global Energy Resources And The Potential Need For Geoengineering Using The Ceagom Model, John George Anasis, M. A. K. Khalil, George G. Lendaris, Christopher L. Butenhoff, Randall Bluffstone

Systems Science Faculty Publications and Presentations

Humanity faces tremendous challenges as a result of anthropogenic climate change caused by greenhouse gas emissions. The mix of resources deployed in order to meet the energy needs of a growing global population is key to addressing the climate change issue. The goal of this research is to examine the optimal mix of energy resources that should be deployed to meet a forecast global energy demand while still meeting desired climate targets. The research includes the unique feature of examining the role that geoengineering can play in this optimization. The results show that some form of geoengineering is likely to …

An Spm Stage Driven By 3 Stepper Motors, Jianghua Bai, Andres H. La Rosa

Physics Faculty Publications and Presentations

A Scanning Probe Microscope (SPM) stage controlled by 3 stepper motors is designed in this project. The SPM stage controlled by 3 steppers is more versatile than a stage controlled by one motor, but the control of the system is more complicated. In this project, we build the stage actions in an Arduino microcontroller. A finite state machine (FSM) is also built in Arduino to communicate with a PC and an RF controller. A special displaying scheme which has 5 states, is also employed to indicate the operation of the stage. Finally, the SPM stage is fully tested and has …

Development Of Physics Curriculum For Pre-Health Students, Elliot Eckman Mylott

Dissertations and Theses

Many pre-health students are required to take introductory physics as undergraduates, though they often struggle to see the relationship between medicine and what they learn in these courses. In order to help students make that connection, reformed curriculum was adopted that teaches physics through the context of biomedicine. This dissertation will discuss the development, implementation, and assessment of the reformed curriculum for the introductory and intermediate level physics courses that targets the needs of pre-health students.

The curriculum created during this project include laboratory activities, multimedia content, and other instructional materials all of which present physics in biomedical contexts. The …

A Finite Difference Method For Off-Fault Plasticity Throughout The Earthquake Cycle, Brittany A. Erickson, Eric M. Dunham, Arash Khosravifar

Mathematics and Statistics Faculty Publications and Presentations

We have developed an efficient computational framework for simulating multiple earthquake cycles with off-fault plasticity. The method is developed for the classical antiplane problem of a vertical strike-slip fault governed by rate-and-state friction, with inertial effects captured through the radiationdamping approximation. Both rate-independent plasticity and viscoplasticity are considered, where stresses are constrained by a Drucker-Prager yield condition. The off-fault volume is discretized using finite differences and tectonic loading is imposed by displacing the remote side boundaries at a constant rate. Time-stepping combines an adaptive Runge-Kutta method with an incremental solution process which makes use of an elastoplastic tangent stiffness tensor …

Low-Dose And In-Painting Methods For (Near) Atomic Resolution Stem Imaging Of Metal Organic Frameworks (Mofs), B. Layla Mehdi, A. J. Stevens, Peter Moeck, Alice Dohnalkova, A. Vjunov, John L. Fulton, Donald M. Camaioni, Omar K. Farha, Joseph T. Hupp, Bruce C. Gates, Johannes A. Lercher, Nigel D. Browning

Physics Faculty Publications and Presentations

Metal-organic Frameworks (MOFs) are a group of crystalline and highly porous materials consisting of inorganic metal ions/clusters (nodes) that are coordinated by organic linkers. The ability to create a wide range of porous structures, where the pore size can be easily changed in size and shape offers the potential for many applications in gas storage/separation and catalysis. The presence of the organic linkers or “struts” in the sample creates challenges for high resolution microscopy as the sample itself is very sensitive to beam damage. A key challenge for understanding the structures of MOFs and how the applications can be modified …

Properties Of Carbon Nanotubes: Defects, Adsorbates, And Gas Sensing, Micah C. Eastman

Dissertations and Theses

Carbon nanotubes and graphene have been a trending research topic in the past decade. These graphitic compounds exhibit numerous advantageous properties (electronic, mechanical, thermal, optical, etc) which industry and researchers alike are excited to take advantage of. Beyond the challenges of yield and controlled growth, there are a number of standing questions which govern some of the more fundamental characteristics of these materials: What role do lattice defects play in the adsorption of gas molecules on the surface of carbon nanotubes? How are the electronic states of the carbon nanotubes influenced by these adsorbed molecules? And how can we develop …

Design And Application Of A 3d Photocatalyst Material For Water Purification, Simon Paul Fowler

Dissertations and Theses

This dissertation presents a method for enhancement of the efficiency and scalability of photocatalytic water purification systems, along with an experimental validation of the concept. A 3-dimensional photocatalyst structure, made from a TiO₂-SiO₂ composite, has been designed and fabricated for use in a custom designed LED-source illumination chamber of rotational symmetry that corresponds with the symmetry of the photocatalyst material. The design of the photocatalyst material has two defining characteristics: geometrical form and material composition. The design of the material was developed through the creation of a theoretical model for consideration of the system's photonic efficiency. Fabrication …

Find, Build, And Export Information For 3d Printing Of Your Favorite Molecules And Crystal Structures At Two Dedicated Websites, Paul R. Destefano, Peter Moeck

Student Research Symposium

As 3D printers require instructions, the Nano-Crystallography Group at Portland State University is creating two websites (http://nanocrystallography.org/3dconvert/ and http://nanocrystallography.research.pdx.edu/3d-print-files/convert/) where such instructions are created, interactively, for the atomic arrangements of virtually all known molecules and crystals.

We will prepare a "pipeline" into which crystallographic information enters from two curated open access crystallographic databases, is manipulated to create the desired 3D models, and then is exported in either STL format (the standard for monochrome 3D printing) or VRML/X3D (the ISO successor to STL). The two aforementioned databases are the North-American mirror of the Crystallography Open Database (http://nanocrystallography.org) …

Quasi-Optical Measurement For Low Loss Material Characterization In Submillimeter Wave Range, Ha Khiem Tran, Thanh Ngoc Dan Le, Branimir Pejcinovic

Student Research Symposium

An accurate knowledge of dielectric constant of materials is required in many sub-millimeter wave applications. Free-space measurement of materials has always been one of the first choices due to their non-destructive nature and relatively simple sample preparation. However, free-space measurement systems at sub-millimeter frequency range suffer from two main problems: high loss because of divergent beam pattern and diffraction when the beam waist of the radiated beam is relatively large compared to the size of the sample under tests. In order to mitigate these issues, we set up a quasi-optical system using off-axis parabolic mirrors, which enhance the dynamic range …

Finite Element Method Analysis Of Resonant Cavity For Whispering Gallery Acoustic Sensing Microscopy, Thanh N.D. Le, Ha Tran, Andres H. La Rosa

Student Research Symposium

Whispering Gallery Acoustic Sensing (WGAS) has been studied by Department of Physics at Portland State University as a mean of controlling sample to probe distance in tuning-folk-based scanning probe microscopy (TF-SPM). WGAS uses the microscope frame as a resonance acoustic cavity. The setup shows high potential because of high-quality factor nature of acoustic cavity as well as using mechanical motions of the TF itself instead of electrical signals. However, the analytic solution of the eigenfrequencies of the current microscope frame is very complex due to the asymmetric geometry. The purpose of this study is to use finite element method to …

The Effect Of Plasma On Graphene Quality In An Inductively Couple Plasma Chemical Vapor Deposition Reactor, Brendan Coyne

Undergraduate Research & Mentoring Program

Despite continued interest in research and application development, full scale graphene production is still limited by many factors including prohibitively high growth temperature requirements. Extremely high quality graphene growth is possible at high temperatures using chemical vapor deposition (CVD). Use of an inductively coupled plasma chemical vapor deposition (ICP CVD) reactor with the benefit of precursor gas decomposition through plasma generation, may provide possibility to reduce growth temperature. Herein, we report plasma’s effects on graphene growth by comparing growths of increasing power supplied to plasma generation and changes in precursor gas ratios. Plasma composition was characterized by ultraviolet and visible …

Essentials Of Building Virtual Instruments With Labview And Arduino For Lab Automation Applications, Jianghua Bai, Andres H. La Rosa

Physics Faculty Publications and Presentations

Four ways to improve the capabilities of a virtual instrument involving a microcontroller are covered in this paper. They are structural modeling and programming, real-time control, asynchronous communication between the microcontroller and the host PC, and system integration. This paper covers 4 common problems encountered by embedded developers and 5 solutions to the 4 problems. The solutions and examples demonstrated in this article will help readers build robust and reliable virtual instruments for crucial applications.

Remote Measurements Of Tides And River Slope Using An Airborne Lidar Instrument, Austin S. Hudson, Stefan A. Talke, Ruth Branch, Chris Chickadel, Gordon Farquharson, Andrew Jessup

Civil and Environmental Engineering Faculty Publications and Presentations

Tides and river slope are fundamental characteristics of estuaries, but they are usually undersampled due to deficiencies in the spatial coverage of water level measurements. This study aims to address this issue by investigating the use of airborne lidar measurements to study tidal statistics and river slope in the Columbia River estuary. Eight plane transects over a 12-h period yield at least eight independent measurements of water level at 2.5-km increments over a 65-km stretch of the estuary. These data are fit to a sinusoidal curve and the results are compared to seven in situ gauges. In situ– and lidar-based …

Atomic Layer Growth Of Inse And Sb₂Se₃ Layered Semiconductors And Their Heterostructure, Robert Browning, Neal Kuperman, Bill Moon, Raj Solanki

Physics Faculty Publications and Presentations

Metal chalcogenides based on the C–M–M–C (C = chalcogen, M = metal) structure possess several attractive properties that can be utilized in both electrical and optical devices. We have shown that specular, large area films of ^_y-InSe and Sb₂Se₃ can be grown via atomic layer deposition (ALD) at relatively low temperatures. Optical (absorption, Raman), crystalline (X-ray diffraction), and composition (XPS) properties of these films have been measured and compared to those reported for exfoliated films and have been found to be similar. Heterostructures composed of a layer of y-InSe (intrinsically n-type) followed by a layer of …

An Afm-Sims Nano Tomography Acquisition System, Richard William Swinford

Dissertations and Theses

An instrument, adding the capability to measure 3D volumetric chemical composition, has been constructed by me as a member of the Sánchez Nano Laboratory. The laboratory's in situ atomic force microscope (AFM) and secondary ion mass spectrometry systems (SIMS) are functional and integrated as one instrument. The SIMS utilizes a Ga focused ion beam (FIB) combined with a quadrupole mass analyzer. The AFM is comprised of a 6-axis stage, three coarse axes and three fine. The coarse stage is used for placing the AFM tip anywhere inside a (13x13x5 mm³) (xyz) volume. Thus the tip can be moved …

Synthesis And Characterization Of The 2-Dimensional Transition Metal Dichalcogenides, Robert Browning

Dissertations and Theses

In the last 50 years, the semiconductor industry has been scaling the silicon transistor to achieve faster devices, lower power consumption, and improve device performance. Transistor gate dimensions have become so small that short channel effects and gate leakage have become a significant problem. To address these issues, performance enhancement techniques such as strained silicon are used to improve mobility, while new high-k gate dielectric materials replace silicon oxide to reduce gate leakage. At some point the fundamental limit of silicon will be reached and the semiconductor industry will need to find an alternate solution. The advent of graphene led …

Electrical Properties Of Covalently Functionalized Graphene, Paul Plachinda, David Evans, Raj Solanki

Physics Faculty Publications and Presentations

We have employed first-principle calculations to study transformation of graphene’s electronic structure under functionalization by covalent bonds with different atomic and molecular groups - epoxies, amines, PFPA. It is shown that this functionalization leads to an opening in the graphene’s band gap on order of tens meV, but also leads to reduction of electrical conductivity. We also discuss the influence of charge exchange between the functionalizing molecule and graphene’s conjugated electrons on electron transport properties.

Novel Compound, 84f2, Inhibits Calmodulin Deficient Ryr2, Robert Carl Klipp

Dissertations and Theses

The cardiac ryanodine receptor (RyR2) plays a key role in excitation-contraction coupling (ECC). Mutations in RyR2 are known to be linked to the arrhythmogenic disorder, catecholaminergic polymorphic ventricular tachycardia (CPVT), a deadly disease which is characterized by a leak of calcium from sarcoplasmic reticulum and a decrease in calmodulin (CaM) binding. A novel drug, 84F2, shown to inhibit arrhythmias in RyR2-R176Q heterozygous CPVT mouse hearts (2.5 µg/kg), decrease spark frequency in cells derived from CPVT mice (IC₅₀ = 35 nM), and inhibit RyR2 single channel activity at low nanomolar concentrations (IC₅₀ = 8 nM). When CaM is added …

Building A Multivariable Linear Regression Model Of On-Road Traffic For Creation Of High Resolution Emission Inventories, James Eckhardt Powell

Dissertations and Theses

Emissions inventories are an important tool, often built by governments, and used to manage emissions. To build an inventory of urban CO₂ emissions and other fossil fuel combustion products in the urban atmosphere, an inventory of on-road traffic is required. In particular, a high resolution inventory is necessary to capture the local characteristics of transport emissions. These emissions vary widely due to the local nature of the fleet, fuel, and roads.

Here we show a new model of ADT for the Portland, OR metropolitan region. The backbone is traffic counter recordings made by the Portland Bureau of Transportation at …

General Approach To Quantum Channel Impossibility By Local Operations And Classical Communication, Scott M. Cohen

Physics Faculty Publications and Presentations

We describe a general approach to proving the impossibility of implementing a quantum channel by local operations and classical communication (LOCC), even with an infinite number of rounds, and find that this can often be demonstrated by solving a set of linear equations. The method also allows one to design a LOCC protocol to implement the channel whenever such a protocol exists in any finite number of rounds. Perhaps surprisingly, the computational expense for analyzing LOCC channels is not much greater than that for LOCC measurements. We apply the method to several examples, two of which provide numerical evidence that …

High-Quality Chemical Vapor Deposition Graphene-Based Spin Transport Channels, Lester Florian Lampert

Dissertations and Theses

Spintronics reaches beyond typical charge-based information storage technologies by utilizing an addressable degree of freedom for electron manipulation, the electron spin polarization. With mounting experimental data and improved theoretical understanding of spin manipulation, spintronics has become a potential alternative to charge-based technologies. However, for a long time, spintronics was not thought to be feasible without the ability to electrostatically control spin conductance at room temperature. Only recently, graphene, a 2D honeycomb crystalline allotrope of carbon only one atom thick, was identified because of its predicted, long spin coherence length and experimentally realized electrostatic gate tunability. However, there exist several challenges …