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Monte Carlo Simulations And Analysis Of Single-Molecule Detection And Imaging, Peter Williams

Masters Theses

Computer modeling and analysis methods are developed for two modes of operation of an instrument for sensitive fluorescence detection of individual dye-labeled molecules in solution. First, Monte Carlo simulations of experiments for single-molecule imaging (SMI) are extended to include effects of sample flow, sticking of molecules to surfaces, and the finite depth-of-focus of the optics. The results have a bearing on a patented method for high-speed single-molecule DNA sequencing. They indicate that the imaging of freely moving fluorescent labels within a microfluidic flowcell will be considerably more involved than that of immobilized molecules at a surface, which is the usual …

Electrical Conductivity Measurements Of Lithium-Ammonia Solutions, Mariana Constantin Barbu

Masters Theses

The topic covered in this thesis is the study of electronic interactions for liquid metal-ammonia solutions, lithium-ammonia solutions in particular. To obtain a theoretical understanding of so-called correlated electron systems.

The work focuses on sample creation and measurement of electrical conductivity of lithium-ammonia solutions varying with temperature for different concentrations. We have taken measurements in liquid lithium-ammonia mixtures using four-wire method to minimize the contact resistance. We have shown how it is possible to carry out accurate measurements of the electrical conductivity in these systems with the four wire measurements.

Trochoidal Electron Impact Time-Of-Flight Mass Spectrometry Of Chlorodifluoromethane, Wesley Daniel Robertson

Masters Theses

A Time-of-Fight mass spectrometer (TOF-MS) equipped with both a standard electron gun and a trochoidal electron monochromator was constructed and made operational and used to study ionization processes of the molecule Chlorodifluoromethane (CHF₂Cl). The appearance energies of both the parent ion (CHF₂Cl⁺) and the most intense fragment ion (CHF₂⁺) were carefully analyzed and it was observed that the energy for formation of the parent ion, (CHF₂Cl⁺) at 12.50 eV, was at a higher energy than the fragment ion, (CHF₂⁺) at 12.25 eV. This phenomenon …

Optical Solitons In A Three-State Medium, Talal Ghannam

Masters Theses

When a beam of light propagates within a typical medium, absorption is a common phenomenon. This happens when the frequency of the light is close to a resonant frequency of the atoms composing the medium. But in the past few decades, it has been shown that in certain circumstances, carefully chosen pulse shapes are able to propagate without significant absorption even when the frequency of the light is close to an atomic resonant frequency. It was called Self Induced Transparency (SIT).

This phenomenon was intensively studied in the two-state systems. On the other hand, the three-state systems seems not to …