Digital Commons Network^™

Transport Properties Of Nanometer-Sized Assemblies Through Nanofluidic Channels With Single Entity Electrical Detection, Franklin Ifeanyichukwu Uba

LSU Master's Theses

Recently, there have been reports on biological and solid-state nanopores that identify single biopolymers or their constituent monomers by analyzing changes in ionic current blockades when they block the flux of buffer ions while travelling through the nanopores. Nevertheless, there have been several limitations in their application, especially as DNA detectors; Poor confinement of the DNA strand within the nanopore (~0.1 % of a 10 kilobase (kb) DNA), poor signal sensitivity and random motion experienced by the DNA in solution that results in a large amount of noise in the signal. These have led to the development of nanochannel-based devices, …

Development Of A Monte Carlo Based Correction Strategy For A Tg-43 Based Brachytherapy Treatment Planning System To Account For Applicator Inhomogeneities, Bobby Chon Mathews

LSU Master's Theses

Purpose: The purpose of this work was to investigate the use of pre-calculated Monte Carlo (MC) ovoid and source-based attenuation-correction factors that would correct a commercially-available brachytherapy treatment planning system (TPS) generated plan in order to account for any dosimetric effects due to the presence of intracavitary brachytherapy (ICBT) applicators during treatment delivery. Methods: A MC model of an ICBT CT-MR compatible ovoid applicator set was confirmed utilizing radiochromic film (RCF). MC was used to simulate dose distributions resulting from eight source-dwell-positions within the ICBT applicator. Also, the American Association of Physicist in Medicine Task Group 43 Report (AAPM TG-43) …

A Palynological And Sequence Stratigraphic Study Of Santonian - Maastrichtan Strata From The Upper Magdalena Basin, Sandra Garzon

LSU Master's Theses

This manuscript presents a biostratigraphic and sequence stratigraphic interpretation of palynological data from two outcrop sections on the NE flank of the Upper Magdalena Valley (UMV) basin comprising the Santonian to Lower Maastrichtian interval. The objectives of this study where: a) to characterize the lithologically similar Lower Lidita, Upper Lidita, and El Cobre, Buscavidas formations and b) to provide a better understanding of important correlation horizons in the northeastern part of the UMV basin and to confirm the age assignment of stratal units. A cyclic pattern of palynomorph distribution was recognized in both sections and tied to the different stages …

Evaluation Of Volumetric Modulated Arc Therapy (Vmat) Patient Specific Quality Assurance, Gordon Mark Mancuso

LSU Master's Theses

Purpose: The purpose of this work was to perform a comprehensive comparison of fixed-beam intensity modulated radiation therapy (IMRT) and volumetric modulated arc therapy (VMAT) patient specific quality assurance (QA) results, in order to investigate the appropriateness of applying IMRT QA methods and action levels to VMAT treatment plans.

Methods: QA measurements were evaluated for the test geometries provided in AAPM Task Group Report 119. The structure sets were copied onto a cylindrical water-equivalent phantom. Using the Philips Pinnacle³ treatment planning system, fixed-beam IMRT and VMAT treatment plans were constructed. The plans were delivered to the phantom and …

Evaluating The Duration Of Post-Lgm Grounding Events In The Glomar Challenger Basin Paleotrough, Eastern Basin Antarctica, Using Sediment Flux Calculations, Boluwatife Owolana

LSU Master's Theses

Previously acquired geological and geophysical data from the eastern Ross Sea outer shelf support the view that the West Antarctic Ice Sheet (WAIS) deposited three large-volume grounding zone wedges (GZWs) during the relatively short time since the onset of ice sheet retreat began at approximately 11 ka 14C BP. Here, GZW sediment volumes were estimated from seismic data correlations to evaluate the different possible durations of the individual grounding events. The two end-member fluxes used correspond to 1) a modern flux active at Whillans Ice Stream and 2) a larger flux accounting for the larger size of the drainage basin …

Laboratory Scale Seismic Analysis Of A Spatially Variable Hydrological Surface In Unconfined, Unconsolidated Sand, David E. Smolkin

LSU Master's Theses

The ability to measure the depth to the water table can provide information such as reservoir characteristics, soil conditions for agriculture, and actions to be taken with contaminant flow and removal. We attempt to detect this boundary in a larger-than-lab scale experiment. We attempt to simulate a spatially variable water level and attempt to image changes in the depth of this water level. We try to reduce the normally complex natural conditions to those of a nominally homogeneous and isotropic, unconfined sand volume for modeling. These simplified conditions help isolate the effects of remaining complexities such as the variable saturation …

Temporal Changes In Quality Of Life And Environment In New Orleans After Hurricane Katrina, Danielle Johanna Larock

LSU Master's Theses

Understanding and assessing the spatial and temporal changes of quality of life and environment of a community is critical to its sustainable development, especially after a disaster strikes. This study explores an approach that integrates remote sensing with socioeconomic data to assess the temporal changes in quality of life and environment (QOL) using Orleans Parish as an example. Hurricane Katrina, which struck New Orleans in 2005, has had vast implications economically, socially, and environmentally for this city and the surrounding area. Empirically quantifying these concepts will help to rebuild the city more sustainably. This study investigated change in environmental quality …

Fate Of Mississippi River Diverted Nitrate On Vegetated And Non-Vegetated Coastal Marshes Of Breton Sound Estuary, Christine M. Vanzomeren

LSU Master's Theses

The Caernarvon Diversion meters Mississippi River water into coastal marshes of Breton Sound. Elevated levels of nitrogen in river water have sparked concerns that nutrient loading may affect marsh resilience and belowground biomass, as evidence from several marsh fertilization studies. These concerns resulted from observation that fresh and brackish Breton Sound marshes suffered extensive damage from Hurricane Katrina. The goal of this study is to determine the fate of nitrate (the dominant inorganic nitrogen form in the Mississippi River) in Breton Sound Estuary marshes. We hypothesized that most nitrate would be removed by denitrification and that nitrate loading would not …

Developmental Responses To Abiotic Conditions During Aquatic And Air Incubatoin Of The Gulf Killifish (Fundulus Grandis): Subtitle, Charles Alexander Brown

LSU Master's Theses

The Gulf killifish (Fundulus grandis) is a topminnow native to the tidal marshes of the Gulf of Mexico. The species is prized by anglers as effective bait for catching popular sportfish and is of interest to aquaculturists and bait dealers due to its hardy nature. Limited seasonal availability and aquaculture of this species due to low fecundity and larval cannibalism of fry has led to increased incentive to improve cultural techniques. The purpose of this study is to determine the influences of temperature, salinity, and air incubation on embryogenesis of the Gulf killifish. Temperature was found to have a negative …

Geothermal And Geopressure Assessment With Implications For Carbon Dioxide Sequestration, A Regional Scale Study, Lower Tuscaloosa Formation, Louisiana, Timmon Drumm

LSU Master's Theses

The Massive Sand member of the lower Tuscaloosa formation in Louisiana has the potential to be a prolific reservoir for carbon dioxide sequestration. Proximity to near-term anthropogenic carbon dioxide sources and existing infrastructure in the area make Louisiana a viable prospect for carbon capture and storage projects. The geothermal and geopressure conditions of the reservoir indicate that high carbon dioxide densities can be maintained throughout the study area, and substantial sand thicknesses were located. Subsurface depths of the top of the Massive Sand member range from roughly -2500 ft (-762 m) to over -21,000 ft (-6400 m) with a regional …

Provenance And Origin Of Holocene Beach Ridge And Modern Beach Sands From The Costa De Nayarit, Western Mexico, Ruben Abe Cisneros

LSU Master's Theses

The Costa de Nayarit in western Mexico is a classic modern example of the progradation of a coastline in a wave-dominated depositional environment. Throughout the Pleistocene, sediments have been brought to the Costa De Nayarit via three major river systems, the Rio Grande de Santiago, the Rio San Pedro and the Rio Acaponeta. These river systems obtain their sediments from two distinctly different volcanic provinces within central Mexico, the Sierra Madre Occidental (SMO), a volcanic province characterized by its predominance of felsic volcanism (rhyolites) and pyroclastic flows (welded ash flow tuff and ignimbrite), and the Trans-Mexican Volcanic Belt (TMVB), which …

Spatiotemporal Responses Of Macroinvertebraes To Timber Harvesting In Low-Gradient Headwater Streams Of Central Louisiana, Derrick Klimesh

LSU Master's Theses

Macroinvertebrates are reflective of their nearby environment and are popularly used to detect changes in water quality. In this thesis research, macroinvertebrates were collected to investigate aquatic effects of timber harvesting operations with and without the use of best management practices (BMPs) in a forested, low-gradient, subtropical watershed in central Louisiana. Habitat assessments, physicochemical and hydrologic measurements, and macroinvertebrate sampling were conducted nine times from 2006 to 2010 during the spring and late summer, at 13 site locations ranging from plot level to watershed outlet. Timber harvesting occurred in September of 2007. A total of 86,183 macroinvertebrates were identified from …

An Evaluation Of Synchronization Loss Rate Calculations On High Speed Networks, Aaron Tureau

LSU Master's Theses

This paper is broken down into two parts:(1) discussion of current formulas that are used to calculate synchronized loss rates among concurrent TCP flows with the results of those equations on flows running through a bottleneck on a high speed emulated network and (2)steps to create revised forms of these equations that are more accurate and give a more reasonable estimation without having the shortcomings of the current equations. This paper brings to light three equations that were previously proposed and were used in published research projects along with their strengths and shortcomings. Through the study of these equations a …

The Design Of A Computer System To Determine The Causes Of Edema Using Magnetic Resonance Spectroscopy, Carl Allen Fink

LSU Master's Theses

Diabetes is a growing problem in the U.S.A., closely linked to the current obesity epidemic. Two common complications of diabetes, osteomyelitis of the foot, and Charcot's joint, are impossible to differentiate via traditional Magnetic Resonance Imaging. The background of Magnetic Resonance Spectroscopy, which transforms the time-domain MRI signal into the frequency domain spectrum, is explored, and its use to aid in this differentiation is proposed. Artificial Neural Networks can be employed to evaluate the MRS data and to automate the process.

Comparison Of The Age And Growth Of Red Snapper (Lutjanus Campechanus) Amongst Habitats And Regions In The Gulf Of Mexico, Courtney Rose Saari

LSU Master's Theses

The Gulf of Mexico (GOM) red snapper stock has been exploited since the mid 1800s; yet it is still one of the most economically important fisheries in the GOM. Red snapper have been managed as a unit stock and are currently overfished, but perhaps no longer undergoing overfishing. Habitat varies greatly throughout the GOM and while numerous studies have aged red snapper, none have simultaneously compared the age and size structure and growth rates among standing and toppled oil and gas platforms with natural habitats. The objectives of this study were to examine the size and age structure and growth …

Are Local Chemical Releases Causing An Increase In Cancer Rates In East Baton Rouge Parish?, India T. Anderson

LSU Master's Theses

Environmental pollution has become a steadily growing problem in today’s society. East Baton Rouge alone has 13 chemical plants in the parish. The goal of this research is to find out if the chemical releases in the parish are having an effect on the cancer rates in East Baton Rouge Parish. I gathered data from all 64 parishes in Louisiana. The four chemicals I chose to study specifically, Benzene, Dioxin, Formaldehyde, and Xylene. Chemical release data was taken from the Toxic Release Inventory (TRI) website and software from the years1988 to 2009, which was the last reporting year. The cancers …

Population Characteristics Of A White-Tailed Deer Herd In An Industrial Pine Forest Of North-Central Louisiana, John Henry Harrelson

LSU Master's Theses

White-tailed deer are the most important game species in Louisiana, and throughout the southeastern United States. Likewise, the forest products industry represents the most important agricultural commodity in Louisiana, and industrial landowners frequently lease their properties to sportsmen specifically for white-tailed deer hunting. I conducted research assessing survival, space use, and habitat selection of white-tailed deer on a 3885 ha industrial forest owned by Plum Creek Timber Company. I captured 61 deer in Union Parish, Louisiana in 2009-2010, radio-marked 24 females and 23 males, and ear-tagged 7 females and 6 males. Season and sex interacted to affect home range and …

Antarctic Plant And Phytoplankton Response To The First Phase Of The Mid Miocene Climatic Optimum At South Mcmurdo Sound, Lee Foersterling

LSU Master's Theses

The Antarctic Drilling Program (ANDRILL) recovered 1138.54 m of sub-seafloor marine sediments with 98% core recovery at the AND2-2A drill site in South McMurdo Sound. Biostratigraphy, magnetostratigraphy, and isotopic dating (Acton et al., 2008) indicated that an Early to Middle Miocene section (223-1138.54 mbsf) was recovered. This study focuses on an interval with high concentrations of palynomorphs, located between 460.57 and 403.48 mbsf and dated to 16.7 Ma to 16.2 Ma according to the updated Acton et al. (2008) ANDRILL SMS age model. Palynological results show a pronounced increase in organic microfossils between 434.01 and 431.91 mbsf, compared to levels …

Soft Sediment Relay Zones: A High Resolution Seismic Survey Livingston Parish, Louisiana, Erin T. Elliott

LSU Master's Theses

The southern coast of the United States, bordering the Gulf of Mexico, is home to several down-to-the-south, listric, normal fault systems striking parallel to the coast. One of these, the Baton Rouge–Tepetate Fault System located in southern Louisiana, consists of a series of near-surface, reactivated growth faults and relay ramps– a broad area of ductile strain, with contemporaneous sedimentation. Evidence of recent fault and relay ramp movement is seen in surficial fault line scarps and offset roads. This thesis utilizes two near-surface (<500 >m), high-resolution (10 - 300 Hz), continuous seismic reflection profiles (360 m and 480 m long, 3 …

Evaluation Of Selected Plant Products As Dietary Protein Sources For Florida Pompano (Trachinotus Carolinus), Gregory Lech

LSU Master's Theses

Profitability of aquaculture enterprises worldwide has been affected by rising fish meal prices. Plant proteins are promising replacements for fish meal because of their lower cost and worldwide availability. The goal of this research was to provide nutritional information for the development of all-plant diets for Florida pompano by evaluating growth of fish fed soy-based, fish-meal-free diets and assessing the nutritional value of several plant protein sources. In the first experiment, juvenile Florida pompano were fed five, soy-based, fish-meal-free diets containing graded levels of soybean meal (SBM, or M) at 0, 20, 25, 30, or 35%, with the remaining protein …

Modeling The Population Effects Of Hypoxia On Atlantic Croaker (Micropogonias Undulatus) In The Northwestern Gulf Of Mexico, Sean Brandon Creekmore

LSU Master's Theses

The northwestern Gulf of Mexico currently experiences a large hypoxic area (“dead zone”) during the summer. While the local effects of hypoxia on organisms have been documented, the population-level effects are largely unknown. I developed a spatially-explicit, individual-based model to analyze how hypoxia effects on Atlantic croaker reproduction, growth, and mortality in the northwestern Gulf of Mexico could lead to population-level responses. The model follows the hourly growth, mortality, reproduction, and movement of individuals on a 300 x 800 spatial grid of 1 km2 cells for 100 years. Chlorophyll-a concentration, water temperature, and dissolved oxygen were specified daily for each …

Hurricane Induced Land And Vegetation Changes In The Breton Sound Estuary And Chandeleur Islands Using Landsat 5 Tm, Vandana Varshini Raghunathan

LSU Master's Theses

This study focuses on hurricane-induced changes in land and vegetation primarily in two study areas, the Breton Sound Estuary and the Chandeleur Islands, southeast of New Orleans, Louisiana. Breton Sound Estuary consists of the Caernarvon Diversion, a fresh water diversion of the Mississippi River that supplies this region with managed pulses of fresh water and sediments. The Chandeleur Islands are a chain of barrier islands that are uninhabited and transgressive in nature. A sequence of hurricanes in the past two decades has greatly altered both areas significantly. Satellite data were analyzed for a period of 24 years (1987-2011) of Breton …

Social Vulnerability In Louisiana's Upper Industrial Corridor: Spatial Distribution And Linkages With Cumulative Pollution - A Zip Code Level Analysis, María Belén Toscano

LSU Master's Theses

Louisiana’s industrial corridor, the stretch of the lower Mississippi River from New Orleans to Baton Rouge, is one of the areas with the highest concentration of petrochemical facilities and chemical plants in the United States, as well as one of the most heavily polluted. In particular, the present study examined the associations of social vulnerability and potential exposure to environmental pollution in the upper section of the industrial corridor, the Baton Rouge Metropolitan Statistical Area (MSA). The study was based on the methodology developed by Cutter et al. (2003) to construct an empirically derived index to measure social vulnerability to …

Efficient Replica-Exchange Across Distributed Production Infrastructure, Abhinav S. Thota

LSU Master's Theses

Replica-Exchange (RE) methods represent a class of algorithms that involve a large number of loosely-coupled ensembles and are used to understand physical phenomena -- ranging from protein folding dynamics to binding affinity calculations. We develop a framework for RE that supports different replica pairing and coordination mechanisms, that can use a wide range of production cyberinfrastructure concurrently. Additionally, our framework uses a flexible pilot-job implementation, which enables effective resource allocation for multiple replicas. We characterize the performance of two different RE algorithms - synchronous and asynchronous - at unprecedented scales on production distributed infrastructure (Teragrid and LONI). The synchronous RE …

Single-Molecule Detection And Microfluidics: Generating Systems For The In Vitro Diagnostics Of Stroke, Brandon M. Young

LSU Master's Theses

There is currently no available molecular diagnostic test for stroke; the common modality for diagnosis consists of computed tomography or magnetic resonance imaging. Unfortunately, the use of these diagnostic regimens can delay proper therapeutic treatment, which requires administration within the first 3 h of a stroke event. We are developing a molecular assay that can report, in near real time and at the point-of-care, the presence or absence of biomarkers specifically targeted for the diagnosis of ischemic or hemorrhagic stroke. The proposed strategy uses blood-borne mRNAs that are either under-expressed or over-expressed as a result of tissue damage within the …

Comparison Of Tld Dose And Reconstructed Dose For Post-Mastectomy Radiation Therapy With Tomotherapy, Matthew Roberts

LSU Master's Theses

Purpose: To determine the dosimetric accuracy of TomoTherapy’s database technique for delivery verification and dose reconstruction in post-mastectomy radiation therapy (PMRT) treatments. Methods and Materials: Archived treatment data for 5 patients treated at MBPCC were restored to the TomoTherapy research computer system. Pretreatment MVCT images and exit detector dosimetry data collected during treatment of these patients were used to calculate the DV sinogram for each treatment fraction. The DV sinogram and MVCT image for each fraction were used to reconstruct the delivered dose for that fraction using a convolution/superposition algorithm. The reconstructed doses were compared to previously acquired TLD doses …

Delivery Accuracy Of Image Guided Radiation Therapy Using Elekta Infinity's On-Board Imaging, Matthew William Sutton

LSU Master's Theses

Using the technique developed by Vinci et al. (2007), this project quantified the accuracy and precision of the Elekta Infinity using an end-to-end test for the entire image guided radiation therapy (IGRT) treatment process. The IGRT capabilities of the on-board imaging systems for megavoltage (MV) planar imaging and kilovoltage cone beam computed tomography (kVCBCT) were both evaluated. The accuracy of the on-board imaging systems will impact the size of planning treatment margins. A CIRS Radiosurgery head phantom with a Gafchromic EBT2 film dosimetry block insert was used to measure the dose distributions in the three orthogonal planes. A coplanar, isocentric, …

Geomicrobiology Of Louisiana Coastal Marshes Before And After The Deepwater Horizon Oil Spill, Chang Liu

LSU Master's Theses

The 2010 Deepwater Horizon oil spill in the Gulf of Mexico not only impacted open ocean and shoreline geochemical and ecological environments, but it served to promote research of microbial ecosystems in poorly studied habitats, such as Louisiana marshes. Sediment and water samples from four main marshes in southern Louisiana were collected in May 2010 (pre-oil), September 2010 (oiled), and June 2011 (post-oil). Sites near the Mississippi River had exceptionally low salinity in the immediate months following the oil spill due to freshwater diversion efforts; salinity increased by an order of magnitude one year later. Microbial diversity was evaluated from …

Small And Medium Enterprise Agricultural Producers And Forest Landowners Attitudes And Perceptions Towards New Bio-Based Paths To Prosperity: A Pilot Study In Louisiana And Mississippi, Roger D. Smithhart

LSU Master's Theses

Energy producers, developers, legislators, policy makers, and the public are searching for alternative energy sources to alleviate energy demands and dependency on fossil fuels. Of the renewable energy sources, biomass from forestry, crop, and animal residues offer a clean and sustainable solution to help mitigate climate issues and stabilize energy needs. However, most forests and farms in the U.S. are privately owned. It’s important to understand forest landowners’, agricultural producers’, and poultry producers’ attitudes and perceptions towards management activities intended for producing bio-based products. Three surveys were conducted tailored for each group. We surveyed 3,500 small to medium forest landowners …

Evaluation Of Methods To Predict Weibull Parameters For Characterizing Diameter Distributions, Krishna Prasad Poudel

LSU Master's Theses

Compared to other distribution functions, the Weibull distribution has been more widely used in describing diameter distributions because of its flexibility and relative simplicity. Parameters of the Weibull distribution are generally predicted either by the parameter prediction method or by the parameter recovery method. The coefficients of the regression equations for predicting Weibull parameters, moments, or percentiles are often estimated by use of different approaches such as ordinary least squares (OLS), seemingly unrelated regression (SUR) or cumulative distribution function regression (CDFR). However, there is no strong rationale for preferring one method over the other. We developed and evaluated different methods …