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Off-Line Maldi Mass Spectrometry Of Bioaerosols, Jae-Kuk Kim
Off-Line Maldi Mass Spectrometry Of Bioaerosols, Jae-Kuk Kim
LSU Doctoral Dissertations
Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry was used for off-line analysis of bioaerosols. The overall goal of the work is to develop methods and instrumentation to minimize sample treatment and maximize sensitivity and selectivity for bioaerosol analysis. This work is divided into three parts: sample preparation, test bioaerosol analysis, and instrument development. Untreated silicon wafer substrates were used as an alternate to conventional stainless steel targets and proved to be excellent substrates for large molecule analyses as well as small molecule analyses with excellent spot-to-spot and shot-to-shot reproducibility, which is useful for high-throughput and automated sample analysis. MALDI sample preparation …
Investigation Of Superconductivity And Physical Properties Of Intermetallic Compounds: Mon, Mo₃Sb₇, Mgcni₃ And Transition Metal Diborides, Amar Bahadur Karki
Investigation Of Superconductivity And Physical Properties Of Intermetallic Compounds: Mon, Mo₃Sb₇, Mgcni₃ And Transition Metal Diborides, Amar Bahadur Karki
LSU Doctoral Dissertations
In this dissertation work, I report on the interesting results of our detailed investigations of the synthesis, structural, electrical and magnetic characterization of three different classes of intermetallic systems. Mo3Sb7 wires, thin films and microfibers exhibit the highest Tc ~ 8 K, which is substantially higher than the 2.2 K reported for the single crystal and powder of Mo3Sb7. The suppression of the spin fluctuations in Mo3Sb7 is evident by the absence of a parabolic dependence of magnetic susceptibility at 1 T. MoN wires, thin films and coated microfibers …
Fast Marching Methods - Parallel Implementation And Analysis, Maria Cristina Tugurlan
Fast Marching Methods - Parallel Implementation And Analysis, Maria Cristina Tugurlan
LSU Doctoral Dissertations
Fast Marching represents a very efficient technique for solving front propagation problems, which can be formulated as partial differential equations with Dirichlet boundary conditions, called Eikonal equation: $F(x)|\nabla T(x)|=1$, for $x \in \Omega$ and $T(x)=0$ for $x \in \Gamma$, where $\Omega$ is a domain in $\mathbb{R}^n$, $\Gamma$ is the initial position of a curve evolving with normal velocity F>0. Fast Marching Methods are a necessary step in Level Set Methods, which are widely used today in scientific computing. The classical Fast Marching Methods, based on finite differences, are typically sequential. Parallelizing Fast Marching Methods is a step forward for …
Incorporation Of Cα,Α-Disubstituted Amino Acids Into Model Peptide Systems: Conformational Analysis And Possible Applications As Therapeutic Agents, Marcus A. Etienne
Incorporation Of Cα,Α-Disubstituted Amino Acids Into Model Peptide Systems: Conformational Analysis And Possible Applications As Therapeutic Agents, Marcus A. Etienne
LSU Doctoral Dissertations
A diverse set of human diseases is associated with the misfolding of proteins into insoluble fibrillar structures that have predominantly β-sheet secondary structure. Thus it is imperative to elucidate the structural elements that contribute to β-sheet formation and stability. Peptides that autonomously form β-sheets are ideal models to study principles of protein folding and design. Gellman and coworkers first introduced an automonously folded β-hairpin (H-Arg-Tyr-Val-Glu-Val-Yyy-Xxx-Orn-Lys-Ile-Leu-Gln-NH2) that remained monomeric up to ~1 mM. Circular dichroism (CD) and nuclear magnetic resonance (NMR) analyses revealed that incorporation of non-stereogenic Aib-Xxx dipeptidyl sequences into i+1 and i+2 positions of a model peptide nucleates a …
Growth And Properties Of Metal-On-Metal Nanostructures: Ag On Cu(110) And Co On Ag(110), Indrajith Chandima Senevirathne
Growth And Properties Of Metal-On-Metal Nanostructures: Ag On Cu(110) And Co On Ag(110), Indrajith Chandima Senevirathne
LSU Doctoral Dissertations
Heteroepitaxial nanostructures have a diverse array of applications and show novel phenomena that arise from the exotic physics exhibited in reduced dimensions. We have investigated two nano-structured systems in order to gain insights into the dynamics of their nucleation, growth and have observed striking differences, due in part to a competition between lattice strain, surface and interfacial free energies. When Ag is deposited on clean, single-crystal Cu(110), it initially wets the surface with a (111) monolayer, and spontaneously nucleates nanowires as the coverage is increased. The nanowires nucleate at defects and step edges and grow aligned along the [1–10] direction. …
Visual Language Representation For Use Case Evolution And Traceability, Coretta Willis Douglas
Visual Language Representation For Use Case Evolution And Traceability, Coretta Willis Douglas
LSU Doctoral Dissertations
The primary goal of this research is to assist non-technical stakeholders involved in requirements engineering with a comprehensible method for managing changing requirements within a specific domain. An important part of managing evolving requirements over time is to maintain a temporal ordering of the changes and to support traceability of the modifications. This research defines a semi-formal syntactical and semantic definition of such a method using a visual language, RE/TRAC (Requirements Evolution with Traceability), and a supporting formal semantic notation RE/TRAC-SEM. RE/TRAC-SEM is an ontological specification employing a combination of models, including verbal definitions, set theory and a string language …
Dactyls Reveal Evolutionary Patterns In Decapod Crustaceans, Jeffrey Guy Agnew
Dactyls Reveal Evolutionary Patterns In Decapod Crustaceans, Jeffrey Guy Agnew
LSU Doctoral Dissertations
Because of their high preservation potential and uses in foraging and defense, decapod crustacean dactyls (movable fingers of claws) are potentially excellent test subjects for an ongoing debate concerning the relative importance of top-down (predators) and bottom-up (prey) controls on morphologic diversification and evolution. The utility of dactyls for inferring evolutionary patterns were evaluated using living and subfossil xanthoid crabs sampled from the southeast U.S. Atlantic and Gulf of Mexico coasts, and were used to: (1) distinguish the roles of selection and constraint on dactyl morphology through allometric and shape comparisons in the context of the crab’s phylogenetic relationships and …
Landscape Analysis Of Vegetation Change In Coastal Louisiana Following Hurricanes Katrina And Rita, Gregory Dean Steyer
Landscape Analysis Of Vegetation Change In Coastal Louisiana Following Hurricanes Katrina And Rita, Gregory Dean Steyer
LSU Doctoral Dissertations
Investigations of hurricane disturbances on coastal vegetated communities are common, but relatively few are comprehensive across broad geographic regions. The 2005 hurricanes, Katrina and Rita, exposed Louisiana coastal landscapes to physical modifications and extensive and prolonged flooding, resulting in measurable physicochemical changes. This research used remote sensing and field investigations to regionally assess (1) porewater salinity and sulfide impacts to and recovery of coastal Louisiana vegetation communities, and (2) the importance of mineral sediment deposition on accretionary processes. Hurricane effects were most direct and prominent in eastern Louisiana from Katrina and western Louisiana from Rita, compared to central Louisiana exposed …
Rice Straw Fiber Polymer Composites: Thermal And Mechanical Performance, Fei Yao
Rice Straw Fiber Polymer Composites: Thermal And Mechanical Performance, Fei Yao
LSU Doctoral Dissertations
Rice straw fiber can be considered as important potential reinforcing filler for thermoplastic composite because of its lignocellulosic characteristics. It is thus of practical significance to understand and predict the thermal decomposition process of rice straw fibers. A method proposed by Málek, Šesták, and co-workers was used to investigate and model thermal decomposition process of common natural fibers with detailed analysis on rice straw system. Assuming a global model occurring within the entire degradation of natural fibers with consideration of fiber as one pseudo-component, model can be used to describe both isothermal and non-isothermal degradation process of most selected fibers …
Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry For The Analysis Of Collected Bioaerosols, Alton John Dugas
Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry For The Analysis Of Collected Bioaerosols, Alton John Dugas
LSU Doctoral Dissertations
The goal of this dissertation was to demonstrate collection, detection and identification of microorganisms from bioaerosols using offline matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) for the analysis of proteins. MALDI-MS intact bacteria techniques were adapted for use with an orthogonal MALDI quadrupole-time-of-flight mass spectrometer. Results indicate the instrument is capable of analyzing intact whole-cells. The first phase was to evaluate three bioaerosol samplers, an Andersen N6 single-stage impactor (AI), a cyclone impactor, and a vacuum filter system. The samplers collected test bioaerosols using a constructed bioaerosol exposure chamber (BEC). The BEC allowed all three samplers to operate in parallel. Each …
Limit On The Muon Neutrino Magnetic Moment And A Measurement Of The Ccpip To Ccqe Cross Section Ratio, Serge Arisitde Ouedraogo
Limit On The Muon Neutrino Magnetic Moment And A Measurement Of The Ccpip To Ccqe Cross Section Ratio, Serge Arisitde Ouedraogo
LSU Doctoral Dissertations
A search for the muon neutrino magnetic moment was conducted using the Mini- BooNE low energy neutrino data. The analysis was performed by analyzing the elastic scattering interactions of muon neutrinos on electrons. The analysis looked for an excess of elastic scattering events above the Standard Model prediction from which a limit on the neutrino magnetic could be set. In this thesis, we report an excess of 15.3}6.6(stat)}4.1(syst) elastic scattering events above the expected background. At 90% C.L., we derived a limit on the muon neutrino magnetic moment of 12.7~ 10−10ƒÊB. The other analysis reported in this thesis is a …
A Novel Automated Approach Of Multi-Modality Retinal Image Registration And Fusion, Hua Cao
A Novel Automated Approach Of Multi-Modality Retinal Image Registration And Fusion, Hua Cao
LSU Doctoral Dissertations
Biomedical image registration and fusion are usually scene dependent, and require intensive computational effort. A novel automated approach of feature-based control point detection and area-based registration and fusion of retinal images has been successfully designed and developed. The new algorithm, which is reliable and time-efficient, has an automatic adaptation from frame to frame with few tunable threshold parameters. The reference and the to-be-registered images are from two different modalities, i.e. angiogram grayscale images and fundus color images. The relative study of retinal images enhances the information on the fundus image by superimposing information contained in the angiogram image. Through the …
Gas-Phase Formation Of Environmentally Persistent Free Radicals From Thermal Degradation Of Catechol, Hydroquinone, Phenols And Tobacco, Julien Gnonlonfoun Adounkpe
Gas-Phase Formation Of Environmentally Persistent Free Radicals From Thermal Degradation Of Catechol, Hydroquinone, Phenols And Tobacco, Julien Gnonlonfoun Adounkpe
LSU Doctoral Dissertations
Catechol, hydroquinone and Phenol are major constituents of the mainstream tobacco smoke. The toxicity of tobacco has been attributed to the ability of catechol and hydroquinone to undergo endogenous or exogenous redox cycling to form semiquinone type radicals responsible of Reactive Oxygen Species (ROS) formation. ROS such as hydroxyl radicals can cause severe oxidative stress on biological tissues and can provoke severe signaling pathways leading to cardiovascular and pulmonary dysfunctions and carcinogenesis. Given that semiquinone type radicals are organic radicals, characterized by their high instability and reactivity; it is somewhat surprising that they can live long enough mostly when associated …
Nonperturbative Dynamics Of Strong Interactions From Gauge/Gravity Duality, Hovhannes Roman Grigoryan
Nonperturbative Dynamics Of Strong Interactions From Gauge/Gravity Duality, Hovhannes Roman Grigoryan
LSU Doctoral Dissertations
This thesis studies important dynamical observables of strong interactions such as form factors. It is known that Quantum Chromodynamics (QCD) is a theory which describes strong interactions. For large energies, one can apply perturbative techniques to solve some of the QCD problems. However, for low energies QCD enters into the nonperturbative regime, where different analytical or numerical tools have to be applied to solve problems of strong interactions. The holographic dual model of QCD is such an analytical tool that allows one to solve some nonperturbative QCD problems by translating them into a dual five-dimensional theory defined on some warped …
Designing Surface Chemistries For In Situ Afm Investigations Of Biomolecular Reactions With Proteins At The Nanoscale, Johnpeter Ndiangui Ngunjiri
Designing Surface Chemistries For In Situ Afm Investigations Of Biomolecular Reactions With Proteins At The Nanoscale, Johnpeter Ndiangui Ngunjiri
LSU Doctoral Dissertations
In situ atomic force microscopy (AFM) characterizations and lithography can be applied to investigate the orientation, reactivity and stability of protein molecules adsorbed on nanostructures of self-assembled monolayers at near-physiological conditions. Automated nanografting was used to fabricate regular arrays of nanopatterns of ù-functionalized n-alkanethiols with designated terminal chemistries. After writing nanopatterns, protein binding occurs selectively on carboxylate-terminated nanopatterns via covalent bonds that are formed using N-ethyl-N'(dimethylaminoporpyl)-carbodiimide and N-hydroxysuccinimide activation. The amine groups of lysine residues of proteins bond covalently to nanopatterns of carboxylate-terminated alkanethiol self-assembled monolayers, to form a robust surface attachment for sustained contact-mode AFM imaging during biochemical reactions. …
Trace Forms Of Abelian Extensions Of Number Fields, Karli Smith
Trace Forms Of Abelian Extensions Of Number Fields, Karli Smith
LSU Doctoral Dissertations
This dissertation is concerned with providing a description of certain symmetric bilinear forms, called trace forms, associated with finite normal extensions N/K of an algebraic number field K, with abelian Galois group Gal(N/K). These abelian trace forms are described up to Witt equivalence, that is, they are described as elements in the Witt ring W(K). Complete descriptions are obtained when the base field K has exactly one dyadic prime and either no real embeddings or one real embedding. For these fields K, the set of abelian trace forms is closed under multiplication in the Witt ring W(K).
Development Of New Stimuli-Responsive Vesicles Using A Novel Surfactant, Yuming Yang
Development Of New Stimuli-Responsive Vesicles Using A Novel Surfactant, Yuming Yang
LSU Doctoral Dissertations
Many amphiphilic molecules (surfactants) possess the ability to aggregate in aqueous solution to form thermodynamically stable aggregates that have potential for use as molecule containers and delivery systems in analytical or pharmaceutical applications. However, it is difficult to release the encapsulated molecules from these aggregates under a controllable manner, and this problem has dramatically limited the application of these aggregated systems. This study addresses this problem through fundamental structure modification by development of a novel redox stimuli-responsive amphiphile capable of forming vesicle aggregates. Aggregate structure can be adjusted through redox stimulation. The release of agents from the core of the …
Assessment Of Oxygen Sources And Sinks In The Northern Gulf Of Mexico Using Stable Oxygen Isotopes, Zoraida Jazmin Quinones-Rivera
Assessment Of Oxygen Sources And Sinks In The Northern Gulf Of Mexico Using Stable Oxygen Isotopes, Zoraida Jazmin Quinones-Rivera
LSU Doctoral Dissertations
Coastal hypoxia (< 2 mg O2L-1) represents a global problem that continues to worsen as nutrient fluxes to these areas increase. The second largest zone of human-induced hypoxia is located on the Louisiana continental shelf where hypoxic bottom waters commonly occur during summertime. This region is strongly impacted by the large flux of freshwater and nutrients from the Mississippi River, which influences both biological and physical processes that control oxygen dynamics. Yet, based on oxygen concentration measurements alone, it is difficult to separate the effects of biological factors from physical factors. To address this problem, I used a dual budget approach to assess the importance of oxygen sources and sinks on the Louisiana continental shelf. The dual budget was based on using stable oxygen isotopes (ä18O) in combination with conventional oxygen concentration measurements. To analyze temporal trends, surface and bottom water samples were collected monthly between July 2001 and July 2003 along an onshore-offshore transect. For better spatial resolution, shelfwide sampling was conducted extending from the Mississippi River Delta to the Louisiana-Texas border in the month of July of 2001, 2002, and 2003. Oxygen saturations values ranged between 180% at the surface and almost 0% close to the bottom with a corresponding range of ä18O values from 15‰ to 50‰. Biological parameters were important during all seasons for surface oxygen dynamics. The effects of physical factors were less apparent, except during severe physical disturbances. Bottom water oxygen dynamics showed clear seasonal signals of high oxygen depletion and larger contributions of benthic respiration during the summer, which corresponded to the strong stratification of the water column. In bottom waters, summer oxygen depletion was predominantly due to benthic respiration, accounting for about 73%, 80% and 60% of the total oxygen loss for 2001, 2002 and 2003 respectively. Model estimates of production/respiration (P/R) ratio during the July shelfwide cruises indicated that surface waters were productive with an average calculated P/R above 1. Depth stratified sampling (5 m intervals), which started in July 2002, showed that productivity in the mixed layer (5 to 10 m) was not homogeneous. Calculated P/R exceeded 1 only in the surface layer, while at 5 m P/R was approximately 1 and at a depth of 10 m, P/R was less than 1. Additionally, hypoxic conditions were only detected within 5 m of the bottom sediments. The dual budget approach yielded new estimates of productivity dynamics in surface waters and of sediment oxygen demand in bottom waters. For the first time, this study provided routine insight into productivity and respiration dynamics over large temporal and spatial scales. This could not have been accomplished using traditional methods because they commonly rely on time-consuming incubations. The study has shown that respiration dynamics in bottom waters vary seasonally with higher contribution of benthic respiration during stratified summer conditions and prevalent water column respiration during fall and winter. In contrast, seasonality in surface waters was less pronounced as productivity was more dependent on (salinity-inferred) nutrient supply than climatic forcing.
Bioanalytical Methods For Studies Of Homocysteine And Novel Cardiovascular Disease Indicators, Arther T. Gates
Bioanalytical Methods For Studies Of Homocysteine And Novel Cardiovascular Disease Indicators, Arther T. Gates
LSU Doctoral Dissertations
This dissertation explores the development of analytical methods for studies of CVD biomarkers and related biomolecular indicators. Initially, spectroscopic studies were conducted to investigate the chemical reactivity of homocysteine (Hcy), an independent CVD risk factor and serological biomarker. Consequently, we proposed an alternate theory for in vivo Hcy clearance based on spontaneous pyridoxal tetrahydrothiazine (PT) formation from Hcy and pyridoxal. The validity of PT-assisted Hcy clearance was further evaluated by use of capillary electrophoretic methods, which allowed rapid monitoring of protein oligomerization in PT-protein reaction mixtures. The results of these studies suggest that PT formation is a plausible mechanism for …
A Century Of Land Use And Water Quality In Watersheds Of The Continental U.S., Whitney P. Broussard Iii
A Century Of Land Use And Water Quality In Watersheds Of The Continental U.S., Whitney P. Broussard Iii
LSU Doctoral Dissertations
Human endeavors, particularly the agricultural and industrial activities of the last half century, now produce more biologically available nitrogen (N) than all other natural sources combined. The increased N availability can have consequences for the health of aquatic biota on the local, regional, and global scales. One manifestation of this problem is the formation of coastal hypoxic zones where terrestrial N loading creates eutrophic conditions in coastal waters. This dissertation examines a century of changes in land use and water quality to quantify the relationships between agricultural land use practices and riverine N yields in the Mississippi River Basin and …
Syntheses And Evaluation Of Phthalocyanine Derivatives For Applications In Photodynamic And Boron Neutron Capture Therapies For Cancer, Hairong Li
LSU Doctoral Dissertations
Chapter I introduced the background of phthalocyanines including its physical properties and various synthetic methods of free-base and metallo-phthalocyanines. The background of PDT and BNCT was introduced and the objective of ideal sensitizers was described. Chapter II described the synthesis and characterization of a series of pyridiloxy-substituted zinc phthalocyanines with different length of alkyl groups. Pyridiloxy-substituted silica phthalocyanines bearing different associated axial ligands, were alkylated with methyl or PEG chains. Biological study was performed on these cationic pyridiloxy-substituted zinc phthalocyanines. Chapter III introduced the synthesis and photophysical properties of A3B-type zinc phthalocyanines conjugated with one or two cobalta-carborane cages. They …
Identification Of Quantitative Trait Loci Influencing Early Height Growth In Longleaf Pine (Pinus Palustris Mill), Lisha Wu
LSU Doctoral Dissertations
The delay in early height growth (EHG) has been a limiting factor for artificial regeneration of longleaf pine (Pinus palustris Mill.). Simple Sequence Repeat (SSR) markers have been used to map the genome and quantitative trait loci controlling the EHG in a backcross family (longleaf pine x slash pine) x longleaf pine. A total of 228 locus specific SSR markers were screened against 6 longleaf pine recurrent parents and a sample of 7 longlef x slash pine hybrid parents. In total, 135 polymorphic markers were identified. Based on the genetic variance in EHG, available sample size, and the number of …
Novel Devices And Protocols Enabling Isolation And Enumeration Of Low Abundant Biological Cells From Complex Matrices, Andre Antonio Adams
Novel Devices And Protocols Enabling Isolation And Enumeration Of Low Abundant Biological Cells From Complex Matrices, Andre Antonio Adams
LSU Doctoral Dissertations
The dimensions of microfluidic devices closely parallel those of biological cells; thusly, they are excellent platforms for the speciation, transport, manipulation, and analysis of cells. Electrokinetic transport of Escherichia coli and Saccharomyces cerevisiae was evaluated in microfluidic devices fabricated in pristine and UV-modified poly(methylmethacrylate) and polycarbonate. The magnitude and direction of transport of the cells was dictated by the buffer composition, conduit surface chemistry, and intrinsic cellular electrical properties. Baker’s yeast in all devices migrated toward the cathode, because of their smaller electrophoretic mobility compared to the electroosmotic flow of the polymer. E. coli cells suspended in 20 mM PBS …
Elucidating Marine Pore Water Exchange And Fresh Aquifer Sources In Estimates Of Submarine Groundwater Discharge To A Coastal Lagoon, Christopher Gerald Smith
Elucidating Marine Pore Water Exchange And Fresh Aquifer Sources In Estimates Of Submarine Groundwater Discharge To A Coastal Lagoon, Christopher Gerald Smith
LSU Doctoral Dissertations
Dynamic balances between fresh groundwater, saline groundwater, and surface water control the physics and chemistry of subterranean estuaries. Investigations were performed in a subterranean estuary on physical processes contributing to fresh groundwater and saline water mixing, vertical and lateral positioning of this mixing zone, and how this mixing affects spatial and temporal distributions of 234,238U, 226Ra, and 222Rn. The subterranean estuary is located in an unconfined aquifer beneath Indian River Lagoon, Florida, USA, where I could examine redox responses to altered flow regimes. Continuous groundwater and surface water level measurements suggest a strong hydrologic connection between this …
Effect Of Hydrology On The Structure And Function Of Mangrove Ecosystems In The Can Gio Mangrove Biosphere Reserve, Vietnam, Loi Tan Le
LSU Doctoral Dissertations
The influence of hydrology on the mangrove forests of Vietnam has received little scientific attention, even though hydrology is recognized as the primary forcing function in mangrove ecosystems worldwide. The purpose of this dissertation research was to determine the effects of hydrology on specific structural attributes and functional processes within the mangrove forests of Can Gio, a province in southeastern Vietnam. Khe Vinh (KV) and Mui O (MO), two locations within compartment 17 of the Can Gio Mangrove Biosphere Reserve, were chosen as study sites. This research addressed two questions: (1) What are the characteristics of the hydrological regime at …
Laplace Transform Inversion And Time-Discretization Methods For Evolution Equations, Koray Ozer
Laplace Transform Inversion And Time-Discretization Methods For Evolution Equations, Koray Ozer
LSU Doctoral Dissertations
In this dissertation, we introduce Post-Widder-type inversion methods for the Laplace transform based on A-stable rational approximations of the exponential function. Since the results hold for Banach-space-valued functions, they yield efficient time-discretization methods for evolution equations of convolution type; e.g., linear first and higher order abstract Cauchy problems, inhomogeneous Cauchy problems, delay equations, Volterra and integro-differential equations, and problems that can be re-written as an abstract Cauchy problem on an appropriate state space.
Generally Covariant Quantum Information, Stephan Jay Olson
Generally Covariant Quantum Information, Stephan Jay Olson
LSU Doctoral Dissertations
The formalism of covariant quantum theory, introduced by Reisenberger and Rovelli, casts the description of quantum states and evolution into a framework compatible with the principles of general relativity. The leap to this covariant formalism, however, outstripped the standard interpretation used to connect quantum theory to experimental predictions, leaving the predictions of the theory ambiguous. In particular, the absence of a pre-defined time variable or background causal structure resulted in an ``order of projections" ambiguity, in which the usual rule for multiple-measurement probabilities (obtained by time-ordered projections) is not defined. Equally troublesome, the probability postulate of Reisenberger and Rovelli fails …
Utilization Of Aptamers As Affinity Probes In Polymeric Microdevices For Disease Management And The Production Of A Recombinant Membrane Protein, Anne Obubuafo
LSU Doctoral Dissertations
Aptamers have emerged as potential affinity agents that rival or complement antibodies in developing diagnostic assays for disease detection. We have demonstrated the use of PMMA microfluidic devices for conducting rapid affinity microchip CGE of a target protein using aptamers as the affinity probes with an electrophoresis development time of <2 min. Migration times were reproducible for thrombin complexes and free aptamers in CGE buffer with device-to-device RSD variations below 10%. By removing salts from plasma and adding an unlabeled random sequence oligonucleotide to the plasma, thrombin was detected in plasma. This method can be easily adapted to high-throughput parallel screening of plasma samples in multi-channel polymeric microdevices. The expression of rEpCAM in bacteria and mammalian cells was investigated with results showing successful expression in the mammalian systems, while protein expression in the bacteria was inhibited. Higher and prolonged expression levels were obtained in Cos 7 cells as compared to BHK and Hep2 cells due to episomal expression in Cos 7 cells. By combining a one-step IMAC procedure with electrophoresis and electro elution a more selective approach to obtaining electrophoretically pure rEpCAM was achieved. We developed dual-aptamer sandwich assays for thrombin and PDGF-BB targets on PMMA substrate using UV modification with a one-step EDC/NHS coupling reaction. Results indicate that the use of high EDC concentrations lead to faster immobilization and increased coverage density with a shorter sandwich assay development time. The assays were sensitive for both proteins and showed linearity in fluorescence response to changing protein concentration. Single molecule detection methods provide high sensitivity techniques in which aptamers can find use. We have demonstrated the use of two aptamers in a FRET-based assay for the detection of low levels of thrombin. Sensitivity and reliability of the aptamer smFRET assay depends on complex formation and stability. Due to the dissociation constants of the aptamers, single molecule events detected were below the calculated value for a 6 pM concentration of thrombin. Future work will involve adjusting the single molecule system by the use of pinholes to enable analysis of higher sample concentrations.
Biotransformation Of Organic Wood Preservatives By Micro-Organisms, Diana Nasirumbi Obanda
Biotransformation Of Organic Wood Preservatives By Micro-Organisms, Diana Nasirumbi Obanda
LSU Doctoral Dissertations
Wood products are treated with biocides to prevent biodegradation by bacteria, fungi, and insects. Much attention is being directed towards testing of metal-free organic preservative systems. The major disadvantage of organics is that they are biotransformed by micro-organisms in soil and wood. This study explored the biotransformation of the fungicide tebuconazole by a bacteria species (Pseudomonas fluorescens), the mold (Trichoderma harzianum), the white rot fungus (Phanerochaete chrysosporium) and the brown rot (Meruliporia incrassata). After incubation of cultures spiked with tebuconazole, samples were analyzed for chemical remaining and metabolites. M. incrassata, T. harzianum, and the bacterium all cleaved the 1, 2, …
Differential Geometry In Cartesian Closed Categories Of Smooth Spaces, Martin Laubinger
Differential Geometry In Cartesian Closed Categories Of Smooth Spaces, Martin Laubinger
LSU Doctoral Dissertations
The main categories of study in this thesis are the categories of diffeological and Fr\"olicher spaces. They form concrete cartesian closed categories. In Chapter 1 we provide relevant background from category theory and differentiation theory in locally convex spaces. In Chapter 2 we define a class of categories whose objects are sets with a structure determined by functions into the set. Fr\"olicher's $M$-spaces, Chen's differentiable spaces and Souriau's diffeological spaces fall into this class of categories. We prove cartesian closedness of the two main categories, and show that they have all limits and colimits. We exhibit an adjunction between the …