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Physical Sciences and Mathematics

Dissertations, Theses, and Masters Projects

Theses/Dissertations

2008

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A Molecular Analysis Of Atlantic Menhaden (Brevoortia Tyrannus) Stock Structure, Abigail J. Lynch Jan 2008

A Molecular Analysis Of Atlantic Menhaden (Brevoortia Tyrannus) Stock Structure, Abigail J. Lynch

Dissertations, Theses, and Masters Projects

Atlantic menhaden is an ecologically and economically important species along the U.S. east coast. As a filter-feeder and key prey fish, it provides a critical link between primary production, phytoplankton, and larger piscivorous predators, such as striped bass, bluefish, and weakfish. The species is also the target of one of the largest commercial fisheries in the country. Menhaden are assessed as a single, coastwide stock, and recent assessments indicate that it is not overfished. However, there is very limited population genetics data to support the assumption of a single stock. Additionally, the recent consolidation of the fishery and localization of …


Twine-Top Modifications Of Sea-Scallop Dredges: Reducing Yellowtail-Flounder Bycatch, Kelli A. Milleville Jan 2008

Twine-Top Modifications Of Sea-Scallop Dredges: Reducing Yellowtail-Flounder Bycatch, Kelli A. Milleville

Dissertations, Theses, and Masters Projects

No abstract provided.


Idiopathic Lesions And Visual Deficits In The American Lobster (Homarus Americanus) From Longs Island Sound, Ny, Christopher Robert Magel Jan 2008

Idiopathic Lesions And Visual Deficits In The American Lobster (Homarus Americanus) From Longs Island Sound, Ny, Christopher Robert Magel

Dissertations, Theses, and Masters Projects

In 1999 a mass mortality of the American lobster (Homarus americanus) occurred in western Long Island Sound (WLIS). Although the etiology remains unknown, warm bottom water temperature, hypoxia, heavy metal poisoning, and pesticides have been suggested as casual factors. Subsequently, lobsters from WLIS have continued to display symptoms of morbidity that include lethargy and cloudy grey eyes, caused by idiopathic lesions. The effects of these lesions on lobster vision are unknown. We therefore used electoretinography (ERG) to document changes in visual function in lobsters obtained from WLIS, while simultaneously using histology to quantify the extent of damage. Of the lobsters …


Influences Of Habitat Conditions On Submerged Aquatic Vegetation Development In The Chickahominy River And Other Virginia Tributaries Of The Chesapeake Bay, Erin C. Shields Jan 2008

Influences Of Habitat Conditions On Submerged Aquatic Vegetation Development In The Chickahominy River And Other Virginia Tributaries Of The Chesapeake Bay, Erin C. Shields

Dissertations, Theses, and Masters Projects

Recently, there has been an expansion of submerged aquatic vegetation (SAV) in the tidal fresh and oligohaline portions of lower Chesapeake Bay tributaries. Much like the resurgence seen in the Potomac in the 1980’s, this spread of SAV in Virginia systems such as the Mattaponi, Pamunkey and Chickahominy seems to have been initiated by the introduction and spread of the invasive species Hydrilla verticillata, and appears to have been rapid. However the resurgence in the Piankatank has occurred in the absence of the introduction of this species. The factors that are influencing the growth of SAV in these tributary environments, …


Effects Of Metal-Based Montmorillonite Clay And Zeolite Additives On The Fire Retardance And Smoke Suppression Of Poly(Vinyl Chloride), Alexander George Zestos Jan 2008

Effects Of Metal-Based Montmorillonite Clay And Zeolite Additives On The Fire Retardance And Smoke Suppression Of Poly(Vinyl Chloride), Alexander George Zestos

Dissertations, Theses, and Masters Projects

No abstract provided.


Mesopelagic Zooplankton Feeding Ecology And Effects On Particle Repackaging And Carbon Transport In The Subtropical And Subarctic North Pacific Ocean, Stephanie E. Wilson Jan 2008

Mesopelagic Zooplankton Feeding Ecology And Effects On Particle Repackaging And Carbon Transport In The Subtropical And Subarctic North Pacific Ocean, Stephanie E. Wilson

Dissertations, Theses, and Masters Projects

Differences in zooplankton community structure and diet within the mesopelagic zone (base of euphotic zone to 1000 m) play a key role in affecting the efficiency by which organic matter is exported to depth, but how the structure of mesopelagic food webs change with depth or location is poorly known. I examined how mesopelagic zooplankton affect particle export in an oligotrophic (Hawaii Ocean Time-series site ALOHA) compared to a mesotrophic (Japanese time series site K2) open-ocean system. In the first part of the study, I investigated how fecal pellet characteristics change with depth in order to quantify the extent of …


Novel Use Of A Natural Isotope Signature To Track Recruitment And Evaluate Age Determination Methods For The 2002 Year Class Of American Shad In The York River, Sally A. Upton Jan 2008

Novel Use Of A Natural Isotope Signature To Track Recruitment And Evaluate Age Determination Methods For The 2002 Year Class Of American Shad In The York River, Sally A. Upton

Dissertations, Theses, and Masters Projects

No abstract provided.


A Modern Sediment Budget For The Continental Shelf Off The Waipaoa River, New Zealand, Andrea J. Miller Jan 2008

A Modern Sediment Budget For The Continental Shelf Off The Waipaoa River, New Zealand, Andrea J. Miller

Dissertations, Theses, and Masters Projects

No abstract provided.


Synthesis And Field Emission Properties Of Carbon Nanostructures, Kun Hou Jan 2008

Synthesis And Field Emission Properties Of Carbon Nanostructures, Kun Hou

Dissertations, Theses, and Masters Projects

This dissertation focuses on developing carbon nanostructures for application as the electron emissive material in novel back-gated triode field emission devices. The synthesis, characterization, and field emission properties of carbon nanostructures, including 1-D carbon nanofibers (CNF), 2-D carbon nanosheets (CNS), and chromium oxide coated carbon nanosheets (CrOx-CNS), are presented in this work.;First, we have fabricated aligned carbon nanofiber based back-gated triode field emission devices and confirmed the operation of these devices. 1-D carbon nanofibers were directly synthesized on blank TiW substrates using direct current plasma enhanced chemical vapor deposition. It was found that the morphology of carbon nanofibers could be …


Correction Of Finite Size Errors In Many-Body Electronic Structure Calculations, Hendra Kwee Jan 2008

Correction Of Finite Size Errors In Many-Body Electronic Structure Calculations, Hendra Kwee

Dissertations, Theses, and Masters Projects

Electronic structure calculations using simulation cells for extended systems typically incorporate periodic boundary conditions as an attempt to mimic the real system with a practically infinite number of particles. Periodic boundary conditions introduce unphysical constraints that give rise to finite-size errors. In mean-field type calculations, the infinite size limit is achieved by simple quadrature in the Brillouin zone using a finite number of k-points. Many-body electronic structure calculations with explicit two-particle interactions cannot avail themselves of this simplification. Direct extrapolation is computationally costly while size correction with less accurate methods is frequently not sufficiently accurate. The Hartree-Fock method neglects the …


Variability In Geologic Framework And Shoreline Change: Assateague And Wallops Islands, Eastern Shore Of Virginia, Geoffrey L. Wikel Jan 2008

Variability In Geologic Framework And Shoreline Change: Assateague And Wallops Islands, Eastern Shore Of Virginia, Geoffrey L. Wikel

Dissertations, Theses, and Masters Projects

No abstract provided.


Sediment Transport And Erodibility In The York River Estuary: A Model Study, Jeffrey Paul Rinehimer Jan 2008

Sediment Transport And Erodibility In The York River Estuary: A Model Study, Jeffrey Paul Rinehimer

Dissertations, Theses, and Masters Projects

A cohesive sediment bed model was implemented in the Community Sediment Transport Modeling System (CSTMS) to examine processes influencing sediment erodibility and suspended sediment concentrations. Estimates of eroded mass from the sediment bed model were calibrated and verified with erosion chamber measurements from the York River, Virginia, a tidally-dominated environment. A constant erosion rate parameter combined with depth-varying critical shear stress was sufficient to model erosion observations of depth-limited sediment cores. Sensitivity of total eroded mass to seasonal variations in erodibility and changes in consolidation time scale was evaluated during spring-neap variations in bottom stresses. Differences were greatest during spring …


Surface Study Of Niobium For Superconducting Radio Frequency (Srf) Accelerators, Hui Tian Jan 2008

Surface Study Of Niobium For Superconducting Radio Frequency (Srf) Accelerators, Hui Tian

Dissertations, Theses, and Masters Projects

Niobium rf superconductivity is a near-surface phenomenon because of the shallow rf penetration depth. Accordingly, the performance of Nb SRF accelerator cavities is strongly impacted by the topmost few nanometers interior surface, especially as impacted by the final surface conditioning treatments.;Surface topography impacts performance through local loss of superconductivit caused by intrusion of the rf magnetic field, which is enhanced at sharp protrusions. "Sharpness" comprises both vertical and lateral aspects, requiring development a new characterization approach beyond the familiar roughness measurements (Ra, Rz), which view only the vertical component. Stylus profilomety and atomic force microscopy traces view surface topography from …


Time-Resolved Magnetic Flux And Ac-Current Distributions In Superconducting Yttrium Barium Copper Oxide Thin Films And Multifilaments, Ran Yang Jan 2008

Time-Resolved Magnetic Flux And Ac-Current Distributions In Superconducting Yttrium Barium Copper Oxide Thin Films And Multifilaments, Ran Yang

Dissertations, Theses, and Masters Projects

Time-resolved magneto-optical imaging (TRMOI) technique allows dynamic ac transport measurements on superconductors. The high time and spatial resolutions of the measurements also offer good quantitative data analysis of the MO images. YBa2Cu 3O7-delta (YBCO) was discovered as a high-temperature superconductor (HTSC) which has wide applications due to its high critical temperature of Tc = 91 K, and high critical current density Jc in the order of 106-7 Acm-2. Many of the applications require high ac current load and a high magnetic field. We study the interaction behavior of YBCO thin films in an ac transport current and a dc magnetic …


Age, Growth, And Demography Of The Sandbar Shark, Carcharhinus Plumbeus, Over Temporal And Spatial Scales, Jason G. Romine Jan 2008

Age, Growth, And Demography Of The Sandbar Shark, Carcharhinus Plumbeus, Over Temporal And Spatial Scales, Jason G. Romine

Dissertations, Theses, and Masters Projects

Numbers of sandbar sharks, Carcharhinus plumbeus, in the Northwest Atlantic have experienced drastic declines since the early 1980's reaching their minima during the early 1990's. Catch rates in the early 1990's were a mere 25% of those during the 1980's. Such drastic reductions in other fish stocks have often caused compensatory responses, most notably the cod stocks in the Northwest Atlantic. Compensatory responses in depressed populations may include decreased natural mortality, increased fecundity, or increased growth rates. Compensation for population fluctuations below carrying capacities have been recognized for many terrestrial and oceanic r-selected organisms, but few instances have been noted …


Topics In Mode Conversion Theory And The Group Theoretical Foundations Of Path Integrals, Andrew Stephen Richardson Jan 2008

Topics In Mode Conversion Theory And The Group Theoretical Foundations Of Path Integrals, Andrew Stephen Richardson

Dissertations, Theses, and Masters Projects

This dissertation reports research about the phase space perspective for solving wave problems, with particular emphasis on the phenomenon of mode conversion in multicomponent wave systems, and the mathematics which underlie the phase space perspective. Part I of this dissertation gives a review of the phase space theory of resonant mode conversion. We describe how the WKB approximation is related to geometrical structures in phase space, and how in particular ray-tracing algorithms can be used to construct the WKB solution. We further review how to analyze the phenomena of mode conversion from the phase space perspective. By making an expansion …


Controls On Continental Shelf Stratigraphy: Waiapu River, New Zealand, Heidi M. Wadman Jan 2008

Controls On Continental Shelf Stratigraphy: Waiapu River, New Zealand, Heidi M. Wadman

Dissertations, Theses, and Masters Projects

A quantitative understanding of the processes controlling sediment transport and deposition across the land/sea interface is crucial to linking terrestrial and marine environments and understanding the formation of marine stratigraphy. The nature and distribution of terrestrial-derived sediment preserved in shelf stratigraphy in turn provides insight into the complex linkages inherent in source-to-sink sediment dynamics. Located inboard of an actively subducting plate boundary and characterized by one of the highest sediment yields in the world, the open-shelf setting off of the Waiapu River in New Zealand presents an excellent location to improve our understanding of the factors controlling the formation of …


Nearshore Morphology And Lithology: Links To Framework Geology And Shoreline Change, Jennifer L. Miselis Jan 2008

Nearshore Morphology And Lithology: Links To Framework Geology And Shoreline Change, Jennifer L. Miselis

Dissertations, Theses, and Masters Projects

Despite evidence of the geologic and morphologic complexity of inner shelves worldwide, there is a paucity of observations from the nearshore, inhibiting direct comparison of these factors to coastal change. Using geophysical instruments to characterize the geology of the nearshore, this research focuses on the relationships between nearshore stratigraphy, sediment heterogeneity, shoreface morphology and shoreline behavior. While generally not considered in engineering models of shoreline evolution, these factors influence nearshore processes. Overall, the findings presented highlight the importance of nearshore geology, both at the seafloor and underlying it, in contributing to modem sediment transport processes affecting beaches. Shallow, sub-seafloor geology …


Bottom-Up And Top-Down Controls On Sedimentary Ecosystem Functioning In A Seagrass Habitat, Amanda C. Spivak Jan 2008

Bottom-Up And Top-Down Controls On Sedimentary Ecosystem Functioning In A Seagrass Habitat, Amanda C. Spivak

Dissertations, Theses, and Masters Projects

Coastal seagrass ecosystems are complex habitats that are increasingly influenced by human perturbations. Disturbances that affect the strength of bottom-up (i.e. resource availability) and top-down (i.e. consumer) controls may also influence biomass distribution between trophic levels, sediment biogeochemistry, and seagrass ecosystem metabolism. Here, I experimentally tested how top-down and bottom-up perturbations interact with community structure (diversity, food chain length of epibenthic consumers) to alter sediment biogeochemistry and ecosystem metabolism in an experimental eelgrass (Zostera marina ) system. My data indicated that resource availability influenced SOM composition and ecosystem metabolism. Light availability tended to be a stronger determinant of SOM composition …


Acoustic Measurements Of Cohesive Sediment Transport: Suspension To Consolidation, Ho Kyung Ha Jan 2008

Acoustic Measurements Of Cohesive Sediment Transport: Suspension To Consolidation, Ho Kyung Ha

Dissertations, Theses, and Masters Projects

This dissertation aims at utilizing the acoustic approach to measure cohesive sediment behaviors including (1) suspension, (2) settling, (3) deposition and (4) consolidation. The first two processes were attempted to interpret by means of backscattered signal analysis, while the last two processes were done by echo signal analysis. The acoustic instruments used in this study include Acoustic Doppler Velocimeter (ADV), Pulse Coherent Acoustic Doppler Profiler (PC-ADP) and Micro-Chirp system. Used sediments are pure kaolinite and in-situ sediments collected from Mai Po and Clay Bank. 5-MHz ADV was used to estimate the suspended sediment concentration (SSC) and settling velocity (ws). For …


Classification Of Non-Heat Generating Outdoor Objects In Thermal Scenes For Autonomous Robots, William L. Fehlman Jan 2008

Classification Of Non-Heat Generating Outdoor Objects In Thermal Scenes For Autonomous Robots, William L. Fehlman

Dissertations, Theses, and Masters Projects

We have designed and implemented a physics-based adaptive Bayesian pattern classification model that uses a passive thermal infrared imaging system to automatically characterize non-heat generating objects in unstructured outdoor environments for mobile robots. In the context of this research, non-heat generating objects are defined as objects that are not a source for their own emission of thermal energy, and so exclude people, animals, vehicles, etc. The resulting classification model complements an autonomous bot's situational awareness by providing the ability to classify smaller structures commonly found in the immediate operational environment. Since GPS depends on the availability of satellites and onboard …


Methods For Stabilizing High Reynolds Number Lattice Boltzmann Simulations, Brian Robert Keating Jan 2008

Methods For Stabilizing High Reynolds Number Lattice Boltzmann Simulations, Brian Robert Keating

Dissertations, Theses, and Masters Projects

The Lattice Boltzmann Method (LBM) is a simple and highly efficient method for computing nearly incompressible fluid flow. However, it is well known to suffer from numerical instabilities for low values of the transport coefficients. This dissertation examines a number of methods for increasing the stability of the LBM over a wide range of parameters. First, we consider a simple transformation that renders the standard LB equation implicit. It is found that the stability is largely unchanged. Next, we consider a stabilization method based on introducing a Lyapunov function which is essentially a discrete-time H-function. The uniqueness of an H-function …


Formal Analysis Of Firewall Policies, Robert Mathias Marmorstein Jan 2008

Formal Analysis Of Firewall Policies, Robert Mathias Marmorstein

Dissertations, Theses, and Masters Projects

This dissertation describes a technique for formally analyzing a firewall security policy using a quasi-reduced multiway decision diagram model. The analysis allows a system administrator to detect and repair errors in the configuration of the firewall without a tedious manual inspection of the firewall rules.;We present four major contributions. First, we describe a set of algorithms for representing a firewall rule set as a multi-way decision diagram and for solving logical queries against that model. We demonstrate the application of these techniques in a tool for analyzing iptables firewalls. Second, we present an extension of our work that enables analysis …


As Particles Collide: Extra Dimensions And Heavy Leptons, Erin Kathleen De Pree Jan 2008

As Particles Collide: Extra Dimensions And Heavy Leptons, Erin Kathleen De Pree

Dissertations, Theses, and Masters Projects

Despite excellent agreement with experiment, the Standard Model leaves several issues unresolved. These issues will be explored and several extensions to the Standard Model introduced: models with extra dimensions and a fourth family of particles.;In extra dimensional models, there are Fourier modes of the Standard Model particles. We study the detection of bound states of one of the modes and its Standard Model particle.;We then explore a particular model of extra dimensions known as Randall-Sundrum or warped extra dimensions. We will see how this model affects top quark measurements at the proposed International Linear Collider.;Finally we will study the detection …


The Semiclassical Description Of The Energy Spectrum Of Hydrogen In Near-Perpendicular Fields, Christopher Robert Schleif Jan 2008

The Semiclassical Description Of The Energy Spectrum Of Hydrogen In Near-Perpendicular Fields, Christopher Robert Schleif

Dissertations, Theses, and Masters Projects

We examine the energy spectrum of hydrogen in weak near-perpendicular electric and magnetic fields using quantum computations and semiclassical analysis. The structure of the quantum spectrum is displayed in a lattice constructed by plotting the difference between total energy and first order energy versus first order energy, for all states of a given principal quantum number n. For some field parameters, the lattice structure is not regular, but has a lattice defect structure which may be characterized by the transport of lattice vectors. We find that in near-perpendicular fields the structure of the spectrum is divided into six distinct parameter …


Measurement Of Inclusive Proton Double -Spin Asymmetries And Polarized Structure Functions, Robert G. Fersch Jan 2008

Measurement Of Inclusive Proton Double -Spin Asymmetries And Polarized Structure Functions, Robert G. Fersch

Dissertations, Theses, and Masters Projects

The scattering of polarized electrons from a polarized proton target provides a means for studying the internal spin structure of the proton. The CLAS (CEBAF Large Acceptance Spectrometer) EG1b experiment in Hall-B at Jefferson Laboratory measured double-spin inclusive and exclusive electron-nucleon scattering asymmetries using longitudinally polarized frozen NH3 and ND3 targets and a longitudinally polarized electron beam at 4 different energies (1.6, 2.5, 4.2, 5.6 GeV). Extraction of the virtual photon asymmetry Ap1 (for 0.05 GeV2 < Q2 < 5.0 GeV2) provides precision measurements of the polarized proton spin-structure function gp1 in and above the resonance region. Linear regression of data between the varying energies yields new constraints on the virtual photon asymmetry Ap2 (and thus the structure function gp2 ) in the resonance region (for 0.3 GeV2 < Q2 < 1.0 GeV2). Measurements of these structure functions and their moments allows testing of perturbative Quantum Chromodynamics (pQCD) models and evaluation of moments of the structure functions in the Operator Product Expansion. Testing of Chiral Perturbation Theory (chiPT) at Q2 < 0.2 GeV 2 is enabled by the new data. Other applications of polarized structure functions include measurement of foward-spin polarizability, evaluation of high-order corrections in 1H hyperfine splitting, and testing of quark-hadron duality.


Interspecific Interactions In Oyster Reef Communities: The Effect Of Established Fauna On Oyster Larval Recruitment, Brian B. Barnes Jan 2008

Interspecific Interactions In Oyster Reef Communities: The Effect Of Established Fauna On Oyster Larval Recruitment, Brian B. Barnes

Dissertations, Theses, and Masters Projects

The behaviors of oyster larvae are difficult to monitor or experimentally manipulate, especially in field conditions. As a result, little is known of the fate of oysters in the larval portion of their life cycle, prior to recruitment. At the transition from pelagic larvae to benthic adults, larvae are likely to come into contact with many invertebrates resident on oyster reefs. Of these, fouling epifauna are generally believed to reduce the settlement of interspecific larvae through competitive exclusion and predation. Studies of these interactions, however, often utilize artificial settlement panels, which can exhibit different recruitment patterns to those observed on …


Status, Distribution And Reproductive Rates Of American Oystercatchers In Virginia, Alexandra Lee Wilke Jan 2008

Status, Distribution And Reproductive Rates Of American Oystercatchers In Virginia, Alexandra Lee Wilke

Dissertations, Theses, and Masters Projects

No abstract provided.


Community Dynamics In Submersed Aquatic Vegetation: Intermediate Consumers As Mediators Of Environmental Change, James G. Douglass Jan 2008

Community Dynamics In Submersed Aquatic Vegetation: Intermediate Consumers As Mediators Of Environmental Change, James G. Douglass

Dissertations, Theses, and Masters Projects

Natural ecosystems are strongly affected by changes in resource supply (bottom-up forces) and by changes in upper trophic levels (top-down forces). The extent to which these processes impact a system depends largely on the responses of organisms at middle trophic levels. In seagrass beds, a group of mid-level consumers known as mesograzers form a critical link in the chain of impact, connecting seagrass and epiphytic algae with predatory fishes and crustaceans. I observed dramatic seasonal and interannual changes in mesograzer abundance and species composition in eelgrass (Zostera marina) beds of lower Chesapeake Bay, Virginia, and endeavored to explain the top-down …


A Bio-Economic Feasibility Model For Remote Setting: Potential For Oyster Aquaculture In Virginia, Michael Spohn Congrove Jan 2008

A Bio-Economic Feasibility Model For Remote Setting: Potential For Oyster Aquaculture In Virginia, Michael Spohn Congrove

Dissertations, Theses, and Masters Projects

No abstract provided.