Digital Commons Network^™

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …

Consequences Of The Megafauna Extinction: Changes In Food Web Networks On The Edwards Plateau Across The Pleistocene-Holocene Transition, Quentin A. Smith Jr.

School of Biological Sciences: Dissertations, Theses, and Student Research

We are experiencing biodiversity loss due to climate change and human impacts, which is not only harmful to the environment but can also alter the composition of communities and interactions among species. The late Pleistocene experienced a loss of large-bodied mammals which resulted in significant changes in community structure due to changes in body size, diet, and species associations. The impact of these changes on species interactions and community structure across the Pleistocene-Holocene transition remains poorly understood. Using a robust data set of species composition, stable isotopes, body size, and climate variables, we constructed and compared ecological networks of mammal …

Designed For Life: Unearthing Just And Sustainable Urban Design Through The Daylighting Of Phalen Creek, Corgan R. Archuleta

Geography Honors Projects

This thesis conceptualizes a relational approach to urban design. Often separated from justice, I argue urban design can shape spaces to enable respectful and reciprocal human and more-than- human relationships. Focusing on Phalen Creek in Saint Paul, Minnesota, I illuminate just and sustainable possibilities between ecologically sustainable and socially inclusive design. Phalen Creek was a natural waterway buried in a pipe during 20th century urbanization to be partially reconstructed through daylighting. The Indigenous and Immigrant stories driving restoration expand urban design’s liberatory potential. Combining just sustainabilities with infrastructure theory and Indigenous Knowledges, I contend urban design offers a relational approach …

The Role Of Geomorphological Context In Vegetative Succession Within The Breiðamerkurjökull Glacial Foreland, Lucas Nerbonne

Independent Study Project (ISP) Collection

As glaciers retreat worldwide at an accelerating pace, understanding primary succession in these newly exposed landscapes becomes increasingly critical. This study examines the initial vegetative colonization patterns in glacial forelands, focusing on the influence of geomorphological formations of resulting plant communities. By analyzing vegetative communities in glaciofluvial and push moraine deposits, this study highlights how the more varied, channelized morphologies of fluvial deposits create potential microclimates better conducive to heterogenous plant colonization than the homogenous terrain of the nearby push moraine. Vegetative coverage, sediment size, and species abundance was collected at 480 sites across 6 different historical glacial extents across …

Vertebrate Diversity In The La Amistad International Park Buffer Zone, Guadalupe, Chiriqui, Panamá, Mina Olson

Independent Study Project (ISP) Collection

Forest fragmentation and increasing agricultural land use are posing threats to the diversity of vertebrates in Panama and across the Mesoamerican Biological Corridor. Protected areas are crucial for providing connectivity and maintaining vertebrate populations. For endemic species with small native ranges, these protected areas are critical for their survival due to sensitivity of habitat change. Higher species diversity and occupancy has been reported for both birds and mammals in protected and forested areas. This pilot survey of vertebrate species was conducted to determine which species live in a primary forest within the buffer zone of La Amistad International Park near …

Comparison Of Ketamine-Xylazine, Butorphanol-Azaperone-Medetomidine, And Nalbuphine-Medetomidine-Azaperone For Raccoon (Procyon Lotor) Immobilization, Shylo R. Johnson, Christine K. Ellis, Chad Wickham, Molly R. Selleck, Amy T. Gilbert

United States Department of Agriculture Wildlife Services: Staff Publications

Raccoons (Procyon lotor) are frequently handled using chemical immobilization in North America for management and research. In a controlled environment, we compared three drug combinations: ketamine-xylazine (KX), butorphanol-azaperone-medetomidine (BAM), and nalbuphinemedetomidine- azaperone (NalMed-A) for raccoon immobilization. In crossover comparisons, raccoons received a mean of the following: 8.66 mg/kg ketamine and 1.74 mg/kg xylazine (0.104 mL/kg KX); 0.464 mg/kg butorphanol, 0.155 mg/kg azaperone, and 0.185 mg/kg medetomidine (0.017 mL/kg BAM); and 0.800 mg/kg nalbuphine, 0.200 mg/kg azaperone, and 0.200 mg/kg medetomidine (0.020 mL/kg NalMed-A). Induction time was shortest with KX (mean6SE, 10.060.7 min) and longest with NalMed-A (13.061.3 min). …

Ivermectin, Colleen Aldous, Eleftherios Gkioulekas, Philip Oldfield

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

No abstract provided.

Human Dimensions Of Woody Encroachment Management In Nebraska, Emily Rowen

School of Natural Resources: Dissertations, Theses, and Student Research

Woody plant encroachment (WPE) is a social-ecological problem that will challenge conservation professionals and agricultural producers to adapt their management strategies. This research first examined WPE from the perspective of individual conservation professionals through an online survey. Conservation professionals’ attitudes about adaptation to vegetation transitions, such as WPE, were of interest because these attitudes are one measure of how prepared this group is to respond to WPE. Hypothesized predictors of adaptation attitude were tested through linear regression modeling. These predictors included ecological change, observation of WPE, or risk perception. It was found that risk perception was the strongest predictor of …

In Situ Water Sensing Systems: Research On Advancements In Environmental Monitoring, Abigail Seibel

Honors Theses

In this work, two sensing systems were researched in order to improve in situ environmental monitoring. The first is a pH and Total Alkalinity sensor used to determine these characteristics of sea water. I explored the facets of this sensor over a 7-week internship with Dr. Ellen Briggs in her lab in summer of 2023. The second is a more holistic sensing system that reads temperature, turbidity, and pressure used for studying environmental characteristics of Alaskan bever ponds. Both systems were developed in close collaboration with scientists who are collecting data to better understand the impacts of climate change. Better …

Evaluating The Efficacy Of Chatgpt In Navigating The Spanish Medical Residency Entrance Examination (Mir): Promising Horizons For Ai In Clinical Medicine., Francisco Guillen-Grima, Sara Guillen-Aguinaga, Laura Guillen-Aguinaga, Rosa Alas-Brun, Luc Onambele, Wilfrido Ortega, Rocio Montejo, Enrique Aguinaga-Ontoso, Paul Barach, Ines Aguinaga-Ontoso

Department of Medicine Faculty Papers

UNLABELLED: The rapid progress in artificial intelligence, machine learning, and natural language processing has led to increasingly sophisticated large language models (LLMs) for use in healthcare. This study assesses the performance of two LLMs, the GPT-3.5 and GPT-4 models, in passing the MIR medical examination for access to medical specialist training in Spain. Our objectives included gauging the model's overall performance, analyzing discrepancies across different medical specialties, discerning between theoretical and practical questions, estimating error proportions, and assessing the hypothetical severity of errors committed by a physician.

MATERIAL AND METHODS: We studied the 2022 Spanish MIR examination results after excluding …

First Approximation Of Population Distributions On The International Space Station, Justin St. P. Walsh, Rao Hamza Ali, Alice C. Gorman, Amir Kanan Kashefi

Art Faculty Articles and Research

This paper presents an analysis of data derived from thousands of publicly available photographs showing life on the International Space Station (ISS) between 2000 and 2020. Our analysis uses crew and locational information from the photographs’ metadata to identify the distribution of different population groups—by gender, nationality, and space agency affiliation—across modules of the ISS, for the first time. Given the significance of the ISS as the most intensively inhabited space habitat to date, an international cooperative initiative involving 26 countries and five space agencies, and one of the most expensive building projects ever undertaken by humans, developing an understanding …

Washington Conservation Corps Intern, Augie D. Alexander

College of the Environment Internship Reports

My crew was based out of Mt. Vernon, WA and we spent most of our time working in Skagit county. Including me, there were 5 members of the crew and a supervisor. A typical day would involve meeting in Mt. Vernon at 7am, piling in the work truck, and heading off to wherever our sponsor for the week needed us. There were also opportunities to be a part of what was called a “spike”, either a 4 or 8 day backcountry trip that usually involves trail maintenance. Throughout the summer I got the opportunity to be on 2 different “spikes”. …

Analyzing Human - Nonhuman Primate Conflict Mitigation Techniques In Mto Wa Mbu, Northern Tanzania, Lily Adams

Independent Study Project (ISP) Collection

Human – non-human primate conflict is particularly crucial due to primates’ high capacity to live among human populations. The study to analyze Human - Nonhuman Primate Conflict Mitigation Techniques, was carried in November 2023 at Mto wa Mbu, Northern Tanzania. To analyze techniques currently being used to mitigate human – non-human primate conflict, this study collected data through semi-structured interviews. Over 87% (n=35) of respondents used multiple mitigation techniques simultaneously. 80% of respondents (n=32) reported using projectiles to ward off foraging primates, 75% of respondents (n=30) reported using loud noises (made either by the voice/body or by manipulating noisemakers), 67.5% …

Sulfur Cycling Connects Microbiomes And Biogeochemistry In Deep-Sea Hydrothermal Plumes, Zhichao Zhou, Patricia Q. Tran, Alyssa M. Adams, Kristopher Kieft, John A. Breier, Caroline S. Fortunato, Cody S. Sheik, Julie A. Huber, Meng Li, Gregory J. Dick, Karthik Anantharaman

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

In globally distributed deep-sea hydrothermal vent plumes, microbiomes are shaped by the redox energy landscapes created by reduced hydrothermal vent fluids mixing with oxidized seawater. Plumes can disperse over thousands of kilometers and their characteristics are determined by geochemical sources from vents, e.g., hydrothermal inputs, nutrients, and trace metals. However, the impacts of plume biogeochemistry on the oceans are poorly constrained due to a lack of integrated understanding of microbiomes, population genetics, and geochemistry. Here, we use microbial genomes to understand links between biogeography, evolution, and metabolic connectivity, and elucidate their impacts on biogeochemical cycling in the deep sea. Using …

Fun Azores: A Functional Trait Database For The Meio-, Macro-, And Megafauna From The Azores Marine Park (Mid-Atlantic Ridge), Neus Campanyà-Llovet, Amanda E. Bates, Daphne Cuvelier, Eva Giacomello, Diana Catarino, Andrew J. Gooday, Björn Berning, Blanca Figuerola, Manuel A. E. Malaquias, Carlos J. Moura, Joana R. Xavier, Tracey Sutton, Laurence Fauconnet, Sofia P. Ramalho, Bárbara De Moura Neves, Gui M. Machado, Tammy Horton, Andrey V. Gebruk, Kirill Minin, Joël Bried, Tina Molodtsova, Mónica A. Silva, Anna Dilman, Antonina Kremenetskaia, Eudriano F. S. Costa, Jameson Clarke, Helen R. Martins, Christopher K. Pham, Marina Carreiro-Silva, Ana Colaço

Marine & Environmental Sciences Faculty Articles

Trait-based approaches that complement taxonomy-based studies have increased in popularity among the scientific community over the last decades. The collection of biological and ecological characteristics of species (i.e., traits) provides insight into species and ecosystem vulnerability to environmental and anthropogenic changes, as well as ecosystem functioning. Here, we present the FUN Azores trait database, describe our approach, evaluate its scope, compare it to other marine trait databases, and explore the spatial distribution of its traits with “functional maps.” While most of the available trait databases to date contain essential information to understand the functional diversity of a taxonomic or functional …

Effect Of Total Population, Population Density And Weighted Population Density On The Spread Of Covid-19 In Malaysia, Hui Shan Wong, Md Zobaer Hasan, Omar Sharif, Azizur Rahman

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

Since November 2019, most countries across the globe have suffered from the disastrous consequences of the Covid-19 pandemic which redefined every aspect of human life. Given the inevitable spread and transmission of the virus, it is critical to acknowledge the factors that catalyse transmission of the disease. This research investigates the relation of the external demographic parameters such as total population, population density and weighted population density on the spread of Covid-19 in Malaysia. Pearson correlation and simple linear regression were utilized to identify the relation between the population-related variables and the spread of Covid-19 in Malaysia using data from …

The Association Between Drought Exposure And Respiratory-Related Mortality In The United States From 2000 To 2018, Yeongjin Gwon, Yuanyuan Ji, Jesse E. Bell, Azar M. Abadi, Jesse D. Berman, Austin Rau, Ronald D. Leeper, Jared Rennie

Daugherty Water for Food Global Institute: Faculty Publications

Climate change has brought increasing attention to the assessment of health risks associated with climate and extreme events. Drought is a complex climate phenomenon that has been increasing in frequency and severity both locally and globally due to climate change. However, the health risks of drought are often overlooked, especially in places such as the United States, as the pathways to health impacts are complex and indirect. This study aims to conduct a comprehensive assessment of the effects of monthly drought exposure on respiratory mortality for NOAA climate regions in the United States from 2000 to 2018. A two-stage model …

Beyond Covid-19: Designing Inclusive Public Health Surveillance By Including Wastewater Monitoring, Rochelle H. Holm, Na'taki Osborne Jelks, Rebecca Schneider, Ted Smith

Faculty Scholarship

Wastewater-based epidemiology is a promising and expanding public health surveillance method. The current wastewater testing trajectory to monitor primarily at community wastewater treatment plants was necessitated by immediate needs of the pandemic. Going forward, specific consideration should be given to monitoring vulnerable and underserved communities to ensure inclusion and rapid response to public health threats. This is particularly important when clinical testing data are insufficient to characterize community virus levels and spread in specific locations. Now is a timely call to action for equitably protecting health in the United States, which can be guided with intentional and inclusive wastewater monitoring.

Ecomorphology Of A Predatory Deep-Sea Fish Family: Does Trophic Specialization Drive Hyperspeciation?, Ryan P. Mcgonagle, David Kerstetter, Danté Fenolio, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Two of the main drivers of speciation among aquatic vertebrates are physical isolation (e.g., lakes and streams) and micro-niche availability (e.g., tropical reefs). In both regards, the mesopelagic domain of the open ocean, Earth’s second largest cumulative ecosystem (behind only the bathypelagic domain), would seem retardant. Ocean circulation makes isolation rare on both contemporary and geological time/space scales, and the lack of substrate precludes stable micro-niches. Paradoxically, some pelagic taxa demonstrate much higher-than-expected species richness on regional scales. A prime example is the dragonfish family Stomiidae, the most speciose family of mesopelagic fishes, owing largely to the subfamily Melanostomiinae (scaleless …

Online Dashboards For Sars-Cov-2 Wastewater Data Need Standard Best Practices: An Environmental Health Communication Agenda, Colleen C. Naughton, Rochelle H. Holm, Nancy J. Lin, Brooklyn P. James, Ted Smith

Faculty Scholarship

The COVID-19 pandemic has highlighted the benefits of wastewater surveillance to supplement clinical data. Numerous online information dashboards have been rapidly, and typically independently, developed to communicate environmental surveillance data to public health officials and the public. In this study, we review dashboards presenting SARS-CoV-2 wastewater data and propose a path toward harmonization and improved risk communication. A list of 127 dashboards representing 27 countries was compiled. The variability was high and encompassed aspects including the graphics used for data presentation (e.g., line/bar graphs, maps, and tables), log versus linear scale, and 96 separate ways of labeling SARS-CoV-2 wastewater concentrations. …

Detection Of A Diverse Endophyte Assemblage Within Fungal Communities Associated With The Arundo Leaf Miner, Lasioptera Donacis (Diptera: Cecidomyiidae), Marie-Claude Bon, John A. Goolsby, Guy Mercadier, Fatiha Guermache, Javid Kashef, Massimo Cristofaro, Ann T. Vacek, Alan Kirk

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The larvae of Lasioptera donacis Coutin feed on fungal communities lining galleries within the mesophyll of leaf sheaths of Arundo donax in an aggregative manner. It has been stated that L. donacis could have established a fundamental symbiotic relationship with one fungus, although the fungal composition of these communities remains unsettled. Using a culture-dependent approach and ITS sequencing, the present work characterizes and compares the fungal communities associated with L. donacis in Eurasia with the endophytes of A. donax in Texas where L. donacis is absent. The 65 cultivable isolates obtained from L. donacis fungal communities were sorted into 15 …

Physiological And Transcriptomic Responses Of Two Artemisia Californica Populations To Drought: Implications For Restoring Drought-Resilient Native Communities, Hagop S. Atamian Dr., Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

As climate change brings drier and more variable rainfall patterns to many arid and semi-arid regions, land managers must re-assemble appropriate plant communities for these conditions. Transcriptome sequencing can elucidate the molecular mechanisms underlying plant responses to changing environmental conditions, potentially enhancing our ability to screen suitable genotypes and species for restoration. We examined physiological and morphological traits and transcriptome sequences of coastal and inland populations of California sagebrush (Artemisia californica), a critical shrub used to restore coastal sage scrub vegetation communities, grown under low and high rainfall environments. The populations are located approximately 36 km apart but …

Agroforestry For The Future: Motivations Behind Tasmanian Farmers Planting Trees, Josh Lipp

Independent Study Project (ISP) Collection

Agroforestry is the act of combining farming and tree planting, and many Tasmanian farmers are starting to plant trees on their properties for multiple reasons. Through conducting 9 interviews with farmers and researchers and visiting field sites, 3 main themes were identified to answer the question: why are Tasmanian farmers planting trees, and what are the benefits and downsides to agroforestry? Interviews help us understand farmers’ perceptions of agroforestry, and field data collection will prove the benefits of agroforestry in the future. Tasmania was chosen as the location of study as it is a state in Australia that largely focuses …

Cascading Effects Of Cover Crops On The Subsequent Cash Crop Defense Against The Polyphagous Herbivore Fall Armyworm (Spodoptera Frugiperda), Adegboyega Fajemisin, Alexis Racelis, Rupesh R. Kariyat

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Simple Summary

Development Of A Benchmark Eddy Flux Evapotranspiration Dataset For Evaluation Of Satellite-Driven Evapotranspiration Models Over The Conus, John M. Volk, Justin Huntington, Forrest S. Melton, Richard Allen, Martha C. Anderson, Joshua B. Fisher, Ayse Kilic, Gabriel Senay, Gregory Halverson, Kyla Knipper, Blake Minor, Christopher Pearson, Tianxin Wang, Yun Yang, Steven Evett, Andrew N. French, Richard Jasoni, William Kustas

School of Natural Resources: Faculty Publications

A large sample of ground-based evapotranspiration (ET) measurements made in the United States, primarily from eddy covariance systems, were post-processed to produce a benchmark ET dataset. The dataset was produced primarily to support the intercomparison and evaluation of the OpenET satellite-based remote sensing ET (RSET) models and could also be used to evaluate ET data from other models and approaches. OpenET is a web-based service that makes field-delineated and pixel-level ET estimates from well-established RSET models readily available to water managers, agricultural producers, and the public. The benchmark dataset is composed of flux and meteorological data from a variety of …

Dust And Loess As Archives And Agents Of Climate And Climate Change In The Late Paleozoic Earth System, Gerilyn S. Soreghan, Nicholas G. Heavens, Lily Pfeifer, Michael J. Soreghan

School of Earth & Environment Departmental Research

Palaeo-loess and silty aeolian-marine strata are well recognized across the Carboniferous–Permian of equatorial Pangaea. Aeolian-transported dust and loess appear in the Late Devonian in the west, are common by the Late Carboniferous, and predominate across equatorial Pangaea by the Permian. The thickest loess deposits in Earth history – in excess of 1000 m – date from this time, and archive unusually dusty equatorial conditions, especially compared to the dearth of equatorial dust in the Cenozoic. Loess archives a confluence of silt generation, aeolian emission and transport, and ultimate accumulation in dust traps that included ephemerally wet surfaces and epeiric seas. …

Role Of Social Determinants Of Health In Differential Respiratory Exposure And Health Outcomes Among Children, Jagadeesh Puvvula, Jill A. Poole, Yeongjin Gwon, Eleanor G. Rogan, Jesse E. Bell

School of Natural Resources: Faculty Publications

Background Attributes defining the Social Determinants of Health (SDoH) are associated with disproportionate exposures to environmental hazards and differential health outcomes among communities. The dynamics between SDoH, disproportionate environmental exposures, and differential health outcomes are often specific to micro-geographic areas.

Methods This study focused on children less than 20 years of age who lived in Douglas County, Nebraska, during 2016–2019. To assess the role of SDoH in differential exposures, we evaluated the association between SDoH metrics and criteria pollutant concentrations and the association between SDoH and pediatric asthma exacerbations to quantify the role of SDoH in differential pediatric asthma outcomes. …

Panarchy Theory For Convergence, Shana M. Sundstrom, David G. Angeler, Jesse Bell, Michael J. Hayes, Jennifer Hodbod, Babak Jalalzadeh‑Fard, Rezaul Mahmood, Elizabeth Vanwormer, Craig R. Allen

School of Natural Resources: Faculty Publications

Coping with surprise and uncertainty resulting from the emergence of undesired and unexpected novelty or the sudden reorganization of systems at multiple spatiotemporal scales requires both a scientific process that can incorporate diverse expertise and viewpoints, and a scientific framework that can account for the structure and dynamics of interacting social-ecological systems (SES) and the inherent uncertainty of what might emerge in the future. We argue that combining a convergence scientific process with a panarchy framework provides a pathway for improving our understanding of, and response to, emergence. Emergent phenomena are often unexpected (e.g., pandemics, regime shifts) and can be …

Drought Influences Annual Survival Of Painted Turtles In Western Nebraska, Allyson N. Beard, Larkin Powell

School of Natural Resources: Faculty Publications

Aquatic habitats in the Great Plains of North America have increased risk of droughts under climate forecasts. Droughts have the potential to influence the population dynamics of pond turtles, and long-term studies are useful to assess the impact of climatic variation on turtles. We compiled twelve years of mark-recapture data for painted turtles (Chrysemys picta) captured in a pond in Keith County, Nebraska during 2005–2016 that included two periods of drought. We used a robust design analysis to investigate influences on population size, annual survival, temporary immigration, and capture probability. Estimates of the annual population size ranged from 92 (CI: …

Role Of Social Determinants Of Health In Differential Respiratory Exposure And Health Outcomes Among Children, Jagadeesh Puvvula, Jill A. Poole, Yeongjin Gwon, Eleanor G. Rogan, Jesse E. Bell

Daugherty Water for Food Global Institute: Faculty Publications

Background Attributes defining the Social Determinants of Health (SDoH) are associated with disproportionate exposures to environmental hazards and differential health outcomes among communities. The dynamics between SDoH, disproportionate environmental exposures, and differential health outcomes are often specific to micro-geographic areas.

Methods This study focused on children less than 20 years of age who lived in Douglas County, Nebraska, during 2016–2019. To assess the role of SDoH in differential exposures, we evaluated the association between SDoH metrics and criteria pollutant concentrations and the association between SDoH and pediatric asthma exacerbations to quantify the role of SDoH in differential pediatric asthma outcomes. …