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Assessing Population Level Genetic Instability Via Moving Average, Samuel Mcdaniel, Rebecca Betensky, Tianxi Cai Nov 2007

Assessing Population Level Genetic Instability Via Moving Average, Samuel Mcdaniel, Rebecca Betensky, Tianxi Cai

Harvard University Biostatistics Working Paper Series

No abstract provided.


Ecology Of An Invasive Predator In Hawaii, Steven C. Hess, Heidi Hansen, Paul C. Banko Aug 2007

Ecology Of An Invasive Predator In Hawaii, Steven C. Hess, Heidi Hansen, Paul C. Banko

Managing Vertebrate Invasive Species

Cats (Felis catus) brought to Hawaii in the 1700s now occupy most habitats throughout the islands, including montane and sublapine zones. We studied home range, population genetics, diseases, and diet of feral cats on Hawai`i Island. Feral cats on Mauna Kea live in low densities and exhibit some of the largest reported home ranges. While 95% kernel home range estimates for 4 males ( x = 1418 ha) were nearly twice as large as 3 female home ranges ( x = 772 ha), one male maintained a home range of 2050 ha. Population genetics revealed that Mauna Kea …


Landscape Genetics Of Feral Swine And Implications For Management, Johanna Delgado-Acevedo, Randy W. Deyoung, Tyler A. Campbell Aug 2007

Landscape Genetics Of Feral Swine And Implications For Management, Johanna Delgado-Acevedo, Randy W. Deyoung, Tyler A. Campbell

Managing Vertebrate Invasive Species

The management of the invasive feral pig (Sus scrofa) has been the subject of intense study in recent years. Feral pigs are also susceptible to diseases (e.g., brucellosis, pseudorabies) that can be transmitted to livestock, humans, and wildlife. Feral pigs clearly represent a threat to the sustainability of multiple agriculture products. Population reduction (trapping or shooting) is the best current alternative for controlling pig damage. However, reduction is crude and inefficient in terms of manpower and resources because pigs from neighboring areas quickly recolonize managed areas. We used a panel of 9 microsatellite loci to study broad-scale population …


Assessment Of A Cgh-Based Genetic Instability, David A. Engler, Yiping Shen, J F. Gusella, Rebecca A. Betensky Jul 2007

Assessment Of A Cgh-Based Genetic Instability, David A. Engler, Yiping Shen, J F. Gusella, Rebecca A. Betensky

Harvard University Biostatistics Working Paper Series

No abstract provided.


Survival Analysis With Large Dimensional Covariates: An Application In Microarray Studies, David A. Engler, Yi Li Jul 2007

Survival Analysis With Large Dimensional Covariates: An Application In Microarray Studies, David A. Engler, Yi Li

Harvard University Biostatistics Working Paper Series

Use of microarray technology often leads to high-dimensional and low- sample size data settings. Over the past several years, a variety of novel approaches have been proposed for variable selection in this context. However, only a small number of these have been adapted for time-to-event data where censoring is present. Among standard variable selection methods shown both to have good predictive accuracy and to be computationally efficient is the elastic net penalization approach. In this paper, adaptation of the elastic net approach is presented for variable selection both under the Cox proportional hazards model and under an accelerated failure time …


Statistical Evaluation Of Evidence For Clonal Allelic Alterations In Array-Cgh Experiments, Colin B. Begg, Kevin Eng, Adam Olshen, E S. Venkatraman Mar 2007

Statistical Evaluation Of Evidence For Clonal Allelic Alterations In Array-Cgh Experiments, Colin B. Begg, Kevin Eng, Adam Olshen, E S. Venkatraman

Memorial Sloan-Kettering Cancer Center, Dept. of Epidemiology & Biostatistics Working Paper Series

In recent years numerous investigators have conducted genetic studies of pairs of tumor specimens from the same patient to determine whether the tumors share a clonal origin. These studies have the potential to be of considerable clinical significance, especially in clinical settings where the distinction of a new primary cancer and metastatic spread of a previous cancer would lead to radically different indications for treatment. Studies of clonality have typically involved comparison of the patterns of somatic mutations in the tumors at candidate genetic loci to see if the patterns are sufficiently similar to indicate a clonal origin. More recently, …


Power Boosting In Genome-Wide Studies Via Methods For Multivariate Outcomes, Mary J. Emond Feb 2007

Power Boosting In Genome-Wide Studies Via Methods For Multivariate Outcomes, Mary J. Emond

UW Biostatistics Working Paper Series

Whole-genome studies are becoming a mainstay of biomedical research. Examples include expression array experiments, comparative genomic hybridization analyses and large case-control studies for detecting polymorphism/disease associations. The tactic of applying a regression model to every locus to obtain test statistics is useful in such studies. However, this approach ignores potential correlation structure in the data that could be used to gain power, particularly when a Bonferroni correction is applied to adjust for multiple testing. In this article, we propose using regression techniques for misspecified multivariate outcomes to increase statistical power over independence-based modeling at each locus. Even when the outcome …


Contributions To The Chiroptera Of Mongolia With First Evidences On Species Communities And Ecological Niches, Dietrich Dolch, Nyamsuren Batsaikhan, Klaus Thiele, Frank Burger, Ingo Scheffler, Andreas Kiefer, Frieder Mayer, Ravčigijn Samjaa, Annegret Stubbe, Michael Stubbe, Leonard Krall, Dirk Steinhauser Jan 2007

Contributions To The Chiroptera Of Mongolia With First Evidences On Species Communities And Ecological Niches, Dietrich Dolch, Nyamsuren Batsaikhan, Klaus Thiele, Frank Burger, Ingo Scheffler, Andreas Kiefer, Frieder Mayer, Ravčigijn Samjaa, Annegret Stubbe, Michael Stubbe, Leonard Krall, Dirk Steinhauser

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

In this paper are presented the accounts of 13 identified bat species from a total of 628 captured specimens from 32 locations in Mongolia during three field expeditions. These species accounts include taxonomical, morphological, and ecological data resulting from observations and further analyses. As a result of this work the distribution of some bat species in Mongolia can be drawn in more detail. For instance, Vespertilio murinus is much wider distributed and abundant than the former records indicate. The Plecotus species were clearly identified by genetic analyses combined with morphological characteristics. Moreover, the second record for Eptesicus serotinus and the …