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Dissertations, Master's Theses and Master's Reports - Open

2009

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Molecular Interaction Between Perthiolated [Beta]-Cyclodextrin (Cd) And The Guests Molecules Adamantaneacetic Acid (Ad) And Ferroceneacetic Acid (Fc); And The Effect Of The Interaction On The Electron Transition Of Cd Anchored Particles, Ming Ning Jan 2009

Molecular Interaction Between Perthiolated [Beta]-Cyclodextrin (Cd) And The Guests Molecules Adamantaneacetic Acid (Ad) And Ferroceneacetic Acid (Fc); And The Effect Of The Interaction On The Electron Transition Of Cd Anchored Particles, Ming Ning

Dissertations, Master's Theses and Master's Reports - Open

The molecular interactions between the host molecule, perthiolated beta-cyclodextrin (CD), and the guest molecules, adamantaneacetic acid (AD) and ferroceneacetic acid (FC), have been inestigated theoretically in both the gas and aqueous phases. The major computations have been carried out at the theoretical levels, RHF/6-31G and B3LYP/6- 31G. MP2 electronic energies were also computed based at the geometries optimized by both the RHF and B3LYP methods in the gas phase to establish a better estimate of the correlation effect.

The solvent phase computations were completed at the RHF/6-31G and B3LYP/6-31G levels using the PCM model. The most stable structures optimized in …


Proteins In Silico-Modeling And Sampling, Parimal Kar Jan 2009

Proteins In Silico-Modeling And Sampling, Parimal Kar

Dissertations, Master's Theses and Master's Reports - Open

Proteins are linear chain molecules made out of amino acids. Only when they fold to their native states, they become functional. This dissertation aims to model the solvent (environment) effect and to develop & implement enhanced sampling methods that enable a reliable study of the protein folding problem in silico.

We have developed an enhanced solvation model based on the solution to the Poisson-Boltzmann equation in order to describe the solvent effect. Following the quantum mechanical Polarizable Continuum Model (PCM), we decomposed net solvation free energy into three physical terms– Polarization, Dispersion and Cavitation. All the terms were implemented, analyzed …


Controlling Electronic And Magnetic Properties Of Ultra Narrow Multilayered Nanowires, Puspamitra Panigrahi Jan 2009

Controlling Electronic And Magnetic Properties Of Ultra Narrow Multilayered Nanowires, Puspamitra Panigrahi

Dissertations, Master's Theses and Master's Reports - Open

Interest in the study of magnetic/non-magnetic multilayered structures took a giant leap since Grünberg and his group established that the interlayer exchange coupling (IEC) is a function of the non-magnetic spacer width. This interest was further fuelled by the discovery of the phenomenal Giant Magnetoresistance (GMR) effect. In fact, in 2007 Albert Fert and Peter Grünberg were awarded the Nobel Prize in Physics for their contribution to the discovery of GMR. GMR is the key property that is being used in the read-head of the present day computer hard drive as it requires a high sensitivity in the detection of …


Development Of Measurement And Modeling Techniques To Quantify Atmospheric Deposition Of Persistent, Bioaccumulative And Toxic Chemicals In The Great Lakes, Mark D. Rowe Jan 2009

Development Of Measurement And Modeling Techniques To Quantify Atmospheric Deposition Of Persistent, Bioaccumulative And Toxic Chemicals In The Great Lakes, Mark D. Rowe

Dissertations, Master's Theses and Master's Reports - Open

Measurement and modeling techniques were developed to improve over-water gaseous air-water exchange measurements for persistent bioaccumulative and toxic chemicals (PBTs). Analytical methods were applied to atmospheric measurements of hexachlorobenzene (HCB), polychlorinated biphenyls (PCBs), and polybrominated diphenyl ethers (PBDEs). Additionally, the sampling and analytical methods are well suited to study semivolatile organic compounds (SOCs) in air with applications related to secondary organic aerosol formation, urban, and indoor air quality.

A novel gas-phase cleanup method is described for use with thermal desorption methods for analysis of atmospheric SOCs using multicapillary denuders. The cleanup selectively removed hydrogen-bonding chemicals from samples, including much of …