Digital Commons Network^™

Fecal Pellet Production By North Atlantic Zooplankton, Michael Gibson

Undergraduate Honors Theses

Fecal pellet carbon (FPC) production by zooplankton is a significant component of the ocean’s biological carbon pump: the suite of biological processes that mediate export of carbon to the deep ocean, ultimately leading to the sequestration of atmospheric carbon dioxide in the ocean. In this study, mesozooplankton (zooplankton 0.2 mm to ~2 cm) were collected from the epipelagic zone in the temperate North Atlantic Ocean during day and night in May 2021. Zooplankton were live separated into five size fractions and incubated on board ship in natural surface seawater to measure fecal pellet production rate of the mixed mesozooplankton community. …

The Importance Of Winter Dinoflagellate Blooms In Chesapeake Bay—A Missing Link In Bay Productivity, Nicole C. Millette, Sophie Clayton, Margaret Mulholland, Leah Gibala-Smith, Michael Lane

VIMS Articles

It is widely assumed that phytoplankton abundance and productivity decline during temperate winters because of low irradiance and temperatures. However, winter phytoplankton blooms commonly occur in temperate estuaries, but they are often undocumented because of reduced water quality monitoring in winter. The small body of in situ work that has been done on winter blooms suggests they can be of enormous consequence to ecosystems. However, because monitoring is often reduced or stopped altogether during winter, it is unclear how widespread these blooms are or how long they can last. We analyzed an over 30-year record of monthly phytoplankton monitoring samples …

Shellfish, Shorelines, Seagrass And Schism How Virginia Became A Leader In Coastal Marine Science, George Mapp

Miscellaneous

Since the 1930s, when William and Mary professor Donald Davis proposed hiring a state-funded biologist to address fisheries issues, Virginia marine scientists have diagnosed shellfish diseases, rejuvenated the oyster and clam fisheries, preserved wetlands and shorelines, restored seaside seagrass, and accurately modeled Chesapeake Bay circulation. This informal history looks back at the lives of the many dedicated marine scientists, advisory personnel, and administrators who led the Commonwealth through difficult times: collapse of the oyster industry, James River toxic pesticide pollution, Chesapeake Bay water quality degradation, crab and striped bass population declines, and the current challenges brought about by climate change …

Succession Of The Late Summer Phytoplankton Blooms In The York River Estuary, Va, Heather Kathleen Corson

Dissertations, Theses, and Masters Projects

The influence of bottom-up and top-down controls on the formation and persistence of phytoplankton blooms has been well studied. However, the relative importance of these bottom-up and top-down controls vary spatially and temporally. In the tidal tributaries and mainstem of Chesapeake Bay, the summer dinoflagellate population follows a succession of bloom-producing species. The dinoflagellate species Margalefidinium polykrikoides and Alexandrium monilatum are currently considered the end of this succession. These species form near-annual blooms in the lower half of Chesapeake Bay and are considered harmful algal bloom (HAB) species due to their negative ecological impacts. However, analysis of long-term monitoring data …

Dataset: A Numerical Simulation Of The Ocean, Sea Ice And Ice Shelves In The Amundsen Sea (Antarctica) Over The Period 2006-2022 And Its Associated Code And Input Files, Pierre St-Laurent

Data

A three-dimensional numerical model of the Amundsen Sea (Antarctica) was used to simulate the period Jan.2006-Mar.2022 under consistent atmospheric/oceanic forcings, bathymetry/ice shelf topography, and model equations/parameters. The model is an implementation of the Regional Ocean Modeling System (ROMS, https://www.myroms.org/) with extensions for sea ice (Budgell 2005) and ice shelves (Dinniman et al. 2011). It simulates the ocean hydrography and circulation, sea ice thermodynamics and dynamics, and the basal melt of the ice shelves, with a uniform horizontal mesh of 1.5km and 20 topography-following vertical levels. Forcings include the ERA5 reanalysis (3-hourly), 10 tidal constituents from CATS 2008, and ocean/sea ice …

Dataset: Global Seamless Tidal Simulation Using A 3d Unstructured-Grid Model, Yinglong J. Zhang, Tomas Fernandez-Montblanc, William Pringle, Hao-Cheng Yu, Linlin Cui, Saeed Moghimi

Data

Dataset:

We present a new 3D unstructured-grid global ocean model to study both tidal and non-tidal processes, with a focus on the total water elevation. Unlike existing global ocean models, the new model resolves estuaries and rivers down to ~8m without the need for grid nesting. The model is validated with both satellite and in-situ observations for elevation, temperature and salinity. Tidal elevation solutions have a mean complex RMSE of 4.2 cm for M2 and 5.4 cm for all 5 major constituents in the deep ocean (the RMSEs for the other 4 constituents (S2, N2, K1, O1) are respectively: 2.05cm, …

Frequent Storm Surges Affect The Groundwater Of Coastal Ecosystems, Giovanna Nordio, Ryan Frederiks, Mary Hingst, Joel Carr, Matthew L. Kirwan, Et Al

VIMS Articles

Recent studies have focused on the effect of large tropical cyclones (hurricanes) on the shore, neglecting the role of less intense but more frequent events. Here we analyze the effect of the offshore tropical storm Melissa on groundwater data collected along the North America Atlantic coast. Our meta-analysis indicates that both groundwater level and specific conductivity significantly increased during Melissa, respectively reaching maximum values of 1.09 m and 25.2 mS/cm above pre-storm levels. Time to recover to pre-storm levels was 10 times greater for groundwater specific conductivity, with a median value of 20 days, while groundwater level had a median …

Development Of 3d And 360 Gis-Based Models To Visualize Projected Sea Level Rise In Coastal Virginia, Candice M. Vinson

Dissertations, Theses, and Masters Projects

Science communication is a skill that can be strengthened with practice. Like any skill, it helps to know what you need to practice in order to get better at it. When presenting information to an audience, the skill of science communication comes into play as early as the first draft of a presentation. As you think about how you will tell your story to the audience, you likely consider including text on slides, images, graphs, maps, or even videos. However, it is crucial to remember that accessibility barriers are something we must often consciously work to rid our presentations of, …

Identifying Factors Controlling Dinophysis Spp. Feeding, Growth, And Toxin Production Through Field And Lab Studies, Vanessa R. Strohm

Dissertations, Theses, and Masters Projects

Harmful algal blooms (HABs) and their associated phycotoxins pose a threat to both human and shellfish health around the world. Dinophysis spp., a causative organism of diarrhetic shellfish poisoning (DSP) in humans, and its two toxin classes: dinophysistoxins (DTXs) and pectenotoxins (PTXs), have been documented throughout the year in the Chesapeake Bay. While DTX concentrations currently remain below regulatory limits in regional seafood products, further research is needed to understand environmental drivers, both biotic and abiotic, that may be impacting Dinophysis spp. feeding on prey, growth, and toxin production. To characterize populations of Dinophysis in situ, an Imaging FlowCytobot (IFCB) …

Chesapeake Bay Carbonate Cycle: Past, Present, And Future, Fei Da

Dissertations, Theses, and Masters Projects

Multiple natural and anthropogenic drivers are expanding the variability of the estuarine carbonate system (CO2 system). These changes in the CO2 system are threatening the health of ecologically and economically important bivalve species. This dissertation investigates the Chesapeake Bay CO2 system by using numerical models and historical water quality data, focusing on the past three decades, the contemporary period, and the late 2060s. In Chapter 2, sensitivity experiments are conducted with a 3-D Chesapeake Bay hydrodynamic-biogeochemical model and reveal that the magnitude of decadal trends in the CO2 system over the past 30 years is much greater than that observed …

Impacts And Uncertainties Of Climate Change On The Chesapeake Bay, Kyle E. Hinson

Dissertations, Theses, and Masters Projects

Climate change impacts in the Chesapeake Bay will limit the efficacy of nutrient reduction efforts and decrease dissolved oxygen, but uncertainties associated with the magnitude of these effects remain. An understanding of underlying mechanisms that have driven recent warming trends will narrow uncertainties for future pathways of temperature change. Additionally, future simulations of climate impacts in the estuary are dependent on multiple different sources of uncertainty, many of which have not yet been fully evaluated. This dissertation used a three- dimensional coupled hydrodynamic-biogeochemical model to investigate recent warming trends as well as underlying uncertainties likely to influence regional projections of …

Climate Impacts On Spatiotemporal Habitat Usage Of Mid-Atlantic Fishes, Adena Jade Schonfeld

Dissertations, Theses, and Masters Projects

Climate change has altered marine environments, most notably by increasing water temperatures and reducing dissolved oxygen concentrations. These persistent changes have impacted the phenology and spatiotemporal habitat usage of mobile species, often through distributional shifts poleward or to deeper water. Climate-driven distributional shifts have been documented for numerous species inhabiting the Atlantic Ocean along the US East Coast, a region disproportionately affected by climate change. Adjacent estuaries are experiencing similar alterations to their physical environments and biotic community composition. Many estuarine species are seasonal residents and changes to environmental conditions within an estuary can result in altered usage and residence …

Emerging Red Sore Disease Of American Eel (Anguilla Rostrata) In Chesapeake Bay: Etiology, Epidemiology, And Impacts In Aquaculture And The Wild, Amanpreet Kaur Kohli

Dissertations, Theses, and Masters Projects

Emerging infectious diseases in aquatic systems, both in aquaculture and in the wild, are a global concern. Many have proposed an uptick in marine diseases as a result of environmental changes including a warming climate, habitat modifications, trade and transfer of wildlife and aquaculture products, pollution, overharvesting of resources, and other anthropogenic impacts. These perturbations can disturb the delicate host-pathogen relationships and result in new diseases or exacerbate the existing diseases in a population. Diseases can lead to several direct and indirect effects in the ecosystem such as population declines and extinctions, and thereby a change in population dynamics, as …

Biotic And Abiotic Factors Associated With Temporal And Spatial Variability Of Constitutive Mixotroph Abundance And Proportion, Marcella Dobbertin Da Costa

Dissertations, Theses, and Masters Projects

Mixotrophic protists, which combine the use of photosynthesis and prey ingestion to obtain nutrients for growth, comprise a substantial portion of the plankton community. However, there is a major gap in our understanding of how mixotroph prevalence varies spatially and temporally and under what conditions they dominate. I utilized a recently developed molecular technique to experimentally identify active mixotrophs (taxa identified to be grazing when samples were collected) and combined this with microscopy data to estimate active mixotroph abundance and proportion at two locations in a temperate estuary over a year. Active mixotroph abundance was compared to potential mixotroph (taxa …