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The Role Of Semaphorins In Response To Injury In C. Elegans Neurons, Maria Belen Harreguy Alfonso

Dissertations

When neural tissue is injured by trauma, delicate neuronal processes such as axons and dendrites are prone to lesion damage and often disconnect. The molecular, cellular, and circuit mechanisms that underlie the regrowth and reconnection of these processes and the recovery of behavior are major challenges in the fields of neuroscience, regeneration, and resilience. At the molecular and cellular levels, signaling pathways that mediate neuronal growth cone guidance during development can play a role in neuronal regeneration and recovery from injury. One family of signaling proteins involved in this process comprises the highly conserved semaphorins and their receptors, the plexins. …

Model-Based Deep Autoencoders For Clustering Single-Cell Rna Sequencing Data With Side Information, Xiang Lin

Dissertations

Clustering analysis has been conducted extensively in single-cell RNA sequencing (scRNA-seq) studies. scRNA-seq can profile tens of thousands of genes' activities within a single cell. Thousands or tens of thousands of cells can be captured simultaneously in a typical scRNA-seq experiment. Biologists would like to cluster these cells for exploring and elucidating cell types or subtypes. Numerous methods have been designed for clustering scRNA-seq data. Yet, single-cell technologies develop so fast in the past few years that those existing methods do not catch up with these rapid changes and fail to fully fulfil their potential. For instance, besides profiling transcription …

Novel Photobase Generators For Photoinduced Polymerization And Ph Regulation, Shupei Yu

Dissertations

Photochemistry encompasses the investigation of chemical processes instigated by light absorption. As important branches of photochemistry, photosensitive and optical materials have attracted extensive research interests in both academia and industry. Photosensitive and optical materials are composed of polymers / small molecules with photo-responsive properties. These materials not only can absorb light in the desired energy spectrum, but also exhibit chemical / physical reactions, which can be applied to different fields such as photoredox, photo-heat, phototherapy, solar cells, diodes, etc. Among them, photobase generators (PBGs) are a series of photosensitive compounds, which absorb the incident light, then release the basic species …

Covalent Inhibition Of Enzyme Sortase A As A New Pathway Against Bacterial Resistance Of Staphylococcus Aureus, Umyeena Bashir

Master's Theses

The continued rise of antibiotic-resistant bacteria, such as MRSA (methicillin-resistant Staphylococcus aureus), has made the discovery of novel antibiotics critical. While bacteriostatic and bactericidal antibiotics inevitably exert evolutionary pressure on bacteria to develop resistance, small molecules that target mechanisms of bacterial virulence present a promising alternative for treatment. Sortase A (Srt A), a cysteine protease of S. aureus, promotes bacterial virulence by covalently attaching proteins such as pilin to the bacterial surface, enabling bacterial adhesion to mammalian cells. Inhibitory studies of this enzyme have gained prominent interest as a new pathway for drug development since blocking this enzyme's ability to …

Community Structure Of Sea Urchin As An Indicator Of The Ecological Balance Of Coastal Areas, Abdul Wahab Radjab, Intan Rabiyanti, Fiqih Muharby

Journal of Environmental Science and Sustainable Development

Sea urchins, soft-shelled invertebrates (Echinoderms), crucially contribute to cleaning the ocean bottom. However, sea urchins in tropical waters like Indonesia have not yet been fully disclosed. This study was conducted at Hutumuri and Rutong waters, Ambon City. This study assessed physical-chemical parameters, sea urchin species composition, classification, and community structure. Employing the Line Transect method with 5x5 m quadrants and 50m transect spacing, data analysis included density, relative density, frequency of presence, diversity, uniformity, and dominance indices. Results indicated normal temperature and salinity at both stations, supporting sea urchin life, with rocky and sandy substrates deemed suitable. A total of …

Review On Locusta Migratoria Cinerascens (Fabricius, 1781)., Laib Djamel Eddine, Benzehra Abdelmadjid, Laib Imen, Aouzal Badis, Salah Akkal

Journal of Bioresource Management

The migratory locust, scientifically known as Locusta migratoria (Linnaeus, 1758), is a captivating insect species that has drawn the interest of scientists, farmers, and the general public. Recognized for its notorious swarming behavior, this insect has the potential to cause extensive damage to crops, leading to agricultural plagues and food shortages. However, beyond its reputation as a pest, the migratory locust is a subject of scientific fascination due to its intricate life cycle, remarkable ability to undergo rapid and dramatic transformations, and its crucial role within the ecosystems it inhabits. This review delves into various facets of L. migratoria, including …

Establishment Of Hand Rearing Protocols With Respect To Feeding, Physiological And Behavioral Aspects In Abandoned Lion Cubs At Safari Zoo Lahore, Muhammad Azhar, Bushra Nisar Khan, Fahd Haseeb, Muhammad Hassan Saleem, Abdul Rehman, Zahid Iqbal Khan, Muhammad Rizwan Khan

Journal of Bioresource Management

African lion (Panthera leo) being most attractive but vulnerable exhibit of zoos and safaris; need particular attention to breeding plans. At captive sites, lioness neglects newborns commonly; at that stage, hand rearing is preferred. This study will highlight the best practices for hand-rearing lion cubs, including knowledge of early medical issues along with their treatment during the first 4 months of growth. 34 lions (08Male: 17Females: 9Cubs) were housed on 15 acres during 2019-21 at Safari Zoo Lahore. A total of 04 lionesses were found entirely abandoned to 05 newborns (03 males & 02 females). The hand-rearing period …

Assessing Neurobehavioral Deficits And Neuroinflammation Following Rllb In A Transgenic Mouse Model, Aakaash Gosain

Theses

As global conflicts are escalating, military personnel have long faced the constant threat of explosions, heightening the risk of blast-induced traumatic brain injury (bTBI). The recent increase in war conflicts and combat zones worldwide not only puts the military, service members, and police forces at risk but also innocent civilians who are caught in the crossfire. While moderate to severe bTBIs have been extensively studied, the pathology of repeated low-level blasts (rLLB) remains less understood. This research addresses the gap in knowledge regarding the long-term consequences of rLLB injuries in the neural anatomy. A transgenic mouse model was subjected to …

Developing An Exercise Program To Improve The Biomotor Abilities Of Wushu Taolu Athletes As A Support For The Teng Kong Bai Lian (Tkbl) Movement, Kamilia Lituhayu, Ahmad Nasrulloh, Rina Yuniana, Roxana Dev Omar Dev

Jurnal Keolahragaan

The aim of this study was: (1) to develop an appropriate circuit training program for biomotor improvement that supports Teng Kong Bai Lian (TKBL), (2) to examine the feasibility of biomotor improvement that supports TKBL, and (3) to examine training program effectivity. This study is a kind of Research and Development through several procedures, such as observation and data collection, planning, program development, expert validation, initial program revision, small scale trial, large scale trial, operational program revision, effectivity test, and completion program, and training program implementation. Instrument of this study consist of observation, questionnaire for expert validation, test and measurement …

A Peculiar Natural Wonderland Of South China Sea: A Bird’S Eye View, Mohamad Nor Azra, Mohd Iqbal Mohd Noor, Juneta-Nor Abu Seman, Lee Seong Wei Dr

Journal of Environmental Science and Sustainable Development

The South China Sea research agenda has increased over the years. However, no scientometric studies have been performed on this topic, which has helped analyze the research on the South China Sea throughout many years. Thus, this study aimed to investigate the global findings of previous research on the South China Sea, development trends, and trending issues surrounding the sea. Literature was extracted from the Web of Science Core Collection (WOSCC) database, and the CiteSpace software was used to visualize the data analyzed. The survey included 12,755 articles. Overall, the number of publications increased annually. Acta Oceanologica Sinica and the …

Economic Valuation Model Of Vanname Shrimp Culture And Mangrove Rehabilitation, Elrin Meivian Mongi Mongi, Mahawan Karuniasa, Mufti Petala Patria

Journal of Environmental Science and Sustainable Development

The current climate change is caused by anthropogenic activities involving energy and industry usage that affect the temperature and climate of the Earth. The Paris Agreement on climate change is a commitment by some countries to act to address climate change by developing sustainably and emitting low levels of carbon dioxide (CO2). Changes in the oceans include temperature increases, acidification, and changes in currents, leading to decreased productivity in fishing and aquaculture. Integrated mangrove shrimp farming, known as silvofisheries, has been recognized as environmentally friendly cultivation. The implementation of silvofishery is a form of mangrove ecosystem management that integrates ecology …

Conversion Of Cellulose To 5-Hydroxymethylfurfural As Sustainable Energy: A Bibliometric Analysis By Vosviewer, Royyan Faradis, Ardiansyah Bagus Suryanto, Irmina Kris Murwani

Journal of Environmental Science and Sustainable Development

The developments of the global economy and society impact resources and the environment. This condition requires an alternative to find new, safe, and sustainable energy types. The conversion of cellulose to 5-hydroxymethylfurfural (5-HMF) has become a significant area of research interest. It has triggered the development of research directions related to biomass and energy because it can be an intermediary source for making polymers, solvents, pharmaceuticals, and biofuels. The primary objective of this study is to give a bibliometric analysis of 1753 reports on the development of research on cellulose conversion to 5-HMF from 1965 to 2021. The data were …

Microbes Mediated Keratin Extraction From Poultry Waste And Assessment Of Its Efficacy In Growth Promotion Of Zea Mays And Triticum Aestivum, Imran Ahmad, Aisha Waheed Qurashi, Roheela Yasmeen

Journal of Bioresource Management

Feathers are a waste product of the poultry industry and are considered a major pollutant of the environment. Soil associated with poultry farms is a rich source of indigenous bacteria that are involved in biodegradation of keratin of the feathers of Gallus gallus domesticus. The present study was designed to understand the role of microbes in the degradation of a feather’s keratin and its possible utilization as a bio-protein for plants. In our studies, Keratinolytic activity was high at 37-45 ℃ and at 7.5-9.5 pH. Pseudomonas aeruginosa was identified by 16S rRNA sequencing as the most active keratinolytic strain. …

Consequences Of Spatial Structure In Soil–Geomorphic Data On The Results Of Machine Learning Models, Daehyun Kim, Insang Song, Lorrayne Miralha, Daniel R. Hirmas, Ryan W. Mcewan, Tom G. Mueller, Pavel Samonil

Biology Faculty Publications

In this paper, we examined the degree to which inherent spatial structure in soil properties influences the outcomes of machine learning (ML) approaches to predicting soil spatial variability. We compared the performances of four ML algorithms (support vector machine, artificial neural network, random forest, and random forest for spatial data) against two non-ML algorithms (ordinary least squares regression and spatial filtering regression). None of the ML algorithms produced residuals that had lower mean values or were less autocorrelated over space compared with the non-ML approaches. We recommend the use of random forest when a soil variable of interest is weakly …

Improving Leg Power And Dolyo Chagi Kick Speed In Taekwondo Using Plyometric, Saq, And Circuit Training Methods, Muhammad Kharis Fajar, Afif Rusdiawan, Muhammad Labib Siena Ar Rasyid

Jurnal Keolahragaan

This study aimed to determine the effect of giving three different exercise methods (Plyometric, SAQ, and Traning Circuit) on increasing leg muscle power and dolyo chagi kick speed in taekwondo athletes. The research design used pre and post design with a total of 18 Unesa student taekwondo athletes as research subjects. The subjects were divided into three groups (PLY, SAQ, and ST) consisting of 6 athletes each. The PLY group performs plyometric; The SAQ group performs Speed, Agility, and Quickness; and the ST Group performs circuit training. Interventions were given to each group with 18 meetings with a frequency of …

The Impact Of Modified Walking Exercise Incorporating Intensity Variations On Increasing Aerobic Endurance, Fauzi Fauzi, Faidillah Kurniawan, Nur Cholis Majid, Noor Azuan Abu Osman

Jurnal Keolahragaan

The aim of this study was to the effect of modified forms of exercise on increasing VO2Max in college students. In particular, This study focuses on assessing the effectiveness of interval training modifications, particularly in the form of walking exercises, in increasing VO2Max in college students. This study followed a quantitative approach, using an experimental design known as the one-group pre-test and post-test design. Cooper's test is used as a research instrument in this study. The study was undertaken with participants from the Department of Sports Development, Faculty of Sports Science, Universitas Negeri Yogyakarta, Indonesia. The findings of this study …

The Effect Of The Simple Fitness Exercise Model To Improve The Vocational Students' Physical Fitness, Ahmad Ridwan, Farid Imam Nurhadi, Betrix Teofa Perkasa Wibafied Billy Yachsie, Ahmad Nasrulloh, Nurmanita Rismaningsih

Jurnal Keolahragaan

Physical fitness is needed by every human being to support his activities. Vocational Students are no exception when entering the industrial world. Because people who have good physical fitness will not feel tired quickly and still have other energy reserves to continue other activities. Vocational students who are basically required to have 70% skills must a healthty and fit body. As for the research objective, namely to determine the effect of the simple fitness training model to improve the physical fitness of Vocational students. The population of this research is vocational students with a sample of 24 students. The sampling …

A Combination Of Split Jumps And Short Sprints To Increase The Volleyball Athletes' Leg Muscle Power And Agility, I Ketut Yoda, Ketut Chandra Adinata Kusuma, I Gede Suwiwa, Hendriketa Da Silva

Jurnal Keolahragaan

pplying the right training methods can lead to optimal athlete performance. The use of one training method is common, and the use of a combination of two training methods is something new in training. The purpose of this study was to reveal the effectiveness of the combination of split jump training as a plyometric exercise with short sprint training on the leg muscle power capacity and agility of volleyball players. The research method in this research is a quasi experiment involving 40 samples (age: 20.85 ± 0.89 years, height: 178.69 ± 6.51 cm, and weight: 72.47 ± 8.02 kg). This …

Konsep Diagnosis Dan Penatalaksanaan Fraktur Osteoporosis Terkini, I Gusti Ngurah Wien Aryana, Febyan Febyan

Jurnal Penyakit Dalam Indonesia

Osteoporosis is a metabolic bone disease that is caused by a decreased amount of bone mass, and microarchitectural damage to bone tissue that affects the bone to break easily. Osteoporosis can be divided into primary and secondary etiologies. Vertebral, hip, distal radius, and proximal humerus are the most common predilection of fracture complication due to osteoporosis. The diagnosis of osteoporotic fractures is established based on the identification of risk factors, general clinical manifestations, specific manifestation from each fracture predilection, and advanced examinations, including radiology imaging and dual-energy x-ray absorptiometry. The purpose of osteoporotic fractures management in elderly is a stable …

The Effect Of Walnut Shell Ash On The Properties Of Cement Paste And Mortar: A Study On Partial Replacement Of Cement, Ali Shebli, Jamal Khatib, Adel Elkordi

BAU Journal - Science and Technology

In the pursuit of a more sustainable future, the utilization of agricultural waste in cementitious products has emerged as a popular and effective solution. The current study explores the feasibility of incorporating ash derived from walnut nutshells, considered agro residues, into eco-friendly blended cement paste and mortars to examine its impact on their properties. A range of blended cement mixtures was formulated by incorporating walnut shell ash (WSA) in three varying proportions of 5%, 10%, and 15% relative to the weight of the cement. Tests were conducted to investigate the properties of the blended cement paste and mortar incorporating WSA, …

Optimization Of The Bio-Synthesis Of Magnesium Nanoparticles From Staphylococcus Haemolyticus: A Pilot Study, Mariam Bassam, Malak Mezher, Mahmoud Khalil

BAU Journal - Science and Technology

Nanotechnology is developing rapidly. This field has many influences in humans’ life. Nanoparticles (NPs) have many unique properties including the size, shape, morphology, and surface area. The synthesis of NPs could be achieved by three ways: physical, chemical, and biological. However, the biological synthesis of NPs has a priority on the other domains due to its safety and environmental friendship. In this regard, the main objective of this study was to synthesize magnesium (Mg) NPs from the bacterium S. haemolyticus which was isolated from the Lebanese wastewater. Different parameters were applied to detect the best conditions to produce the highest …

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Comparative Histological Study On The Algerian Thymus Ciliatus At Different Phenological Stages, Nina Sadou, Ratiba Seridi, Hamdi Bendif

Journal of Bioresource Management

The aim of the current study was to compare the histological observations of stems, leaves, and different secretory structures of Thymus ciliatus at three phenological stages. The anatomical observations of stems, leaves, and glandular trichomes were carried out by light microscopy. The results showed that phenological stages do not affect significantly the anatomical, whereas there was a significant increase in secretory trichomes. The glandular trichomes are distributed on the surface of the stems and the leaves. There are only two distinct types of secretory trichomes, Peltate consisting of a basal cell, a stalk cell, and an 8-celled head type, which …

Anti-Apostatic Feeding Behavior In Two Species Of Assassin Bug, The White-Spotted Assassin Bug Platymeris Biguttatus And Red-Spotted Assassin Bug Platymeris Rhadamanthus (Hemiptera: Reduviidae), Julia H. Potocnjak, Christopher Vitek

School of Integrative Biological and Chemical Sciences Faculty Publications and Presentations

Predator-prey relationships are a driving force when examining community ecology. One question in predator-prey interactions is how a predator may respond to novel prey phenotypes, a form of frequency dependent prey selection. A predator may selectively target or avoid the novel prey, a behavior referred to as anti-apostatic or apostatic selection respectively. We examined apostatic prey selection by observing feeding behavior in two species of assassin bugs (Hemiptera: Reduviidae), the white-spotted assassin bug (Platymeris biguttatus) and the red-spotted assassin bug (Platymeris rhadamanthus) which were fed unmodified and modified (novel) phenotypes of Turkistan cockroaches, Blatta lateralis (Blattodea: …

Utilizing An Extract From Endophytic Fungus, Alternaria Alternata, Isolated From Ricinus Communis L. Leaves As A Biological Agent For Controlling The Migratory Locust In Algeria, Laib Djamel Eddine, Benzehra Abdelmadjid, Laib Imen, Aouzal Badis, Akkal Salah

Journal of Bioresource Management

In this research, we aimed to explore the insecticidal potential of Alternaria alternata, an endophytic fungus derived from the leaves of castor oil plant. To test its insecticidal efficacy, various doses of A. alternata mycoextract were administered to Locusta migratoria L. through both topical and oral pathways. The findings revealed that the insects displayed the highest susceptibility to a concentration of 2 g/L, leading to an impressive mortality rate of 87.5 % and 93.75 % for topical and oral administrations, in the same order. The extract displayed remarkable insecticidal properties, demonstrating LC50 values of 1.09 g/L for the topical …

Melittological Notes From Guatemala (Hymenoptera: Anthophila), 1. New Country Records For Centris Fabricius (Apidae) And Zikanapis Moure (Colletidae), Silas Bossert, José Monzón-Sierra, Richard S. Zack, Ana Cristina García, Elizabeth A. Murray

Insecta Mundi

Abstract

Three species of bees (Hymenoptera: Apidae, Colletidae) are newly recorded for Guatemala: Centris obscurior Michener, Centris vidua Mocsáry, and Zikanapis inbio (Michener, Engel and Ayala). We discuss aspects of their biology and circumstances of the collecting events and provide information on their presently known distribution.

Resumen

Se registran por primera vez tres especies de abejas (HymenopteraN: Apidae, Colletidae) para Guatemala: Centris obscurior Michener, Centris vidua Mocsáry, y Zikanapis inbio (Michener, Engel y Ayala). Discutimos aspectos de su biología, circunstancias bajo las cuáles fueron colectadas y se provee información en la distribución conocida actualmente.

Food Additive Evidence In Food Supplements Most Commonly Consumed By Cancer Patients, Safa Mazouzi, Samira Djekoun Bensoltane, Sabiha Bouzbid, Nesrine Adjabi

Journal of Bioresource Management

The goal of this research is to highlight food additives in the formulations of food supplements consumed by cancer patients. It is a survey conducted at the Cancer treatment center in Annaba to collect a list of food supplements used by these patients. Following a screening of their ingredients for incorporated food additives, which we then classified according to the degree of toxicity, these supplements were classified according to their origin (local or imported). Our findings show that these various groups of dietary supplements contain a variety of food additives with varying degrees of toxicity, such as colorants (E422), acidity …

A Revision Of Dyscolotaxia Horn, 1890 (Coleoptera: Eucnemidae: Macraulacinae: Macraulacini), With The Description Of Amazotaxia New Genus From South America, Robert L. Otto

Insecta Mundi

Abstract

The Neotropical eucnemid genus, Dyscolotaxia Horn, is revised following the examination of specimens from five collections, examination of the published original description of Plesiofornax tetratoma Chassain, and from images provided by Fernanda Salazar-Buenaño (QCAZI). Dyscolotaxia championi Horn is redescribed with included descriptions of the male genitalia and a female specimen. Three new species of false click beetles (Coleoptera: Eucnemidae) are described from the Neotropical region. These new species are: Dyscolotaxia chiriquiensis (Panama), Dyscolotaxia hispaniolensis (Dominican Republic), and Dyscolotaxia picea (Ecuador). Amazotaxia new genus is described from South America for Plesiofornax tetratoma Chassain, creating Amazotaxia tetratoma (Chassain) new combination. Morphology …

Compcorona: A Web Application For Comparative Transcriptome Analyses Ofcoronaviruses Reveals Sars-Cov-2-Specific Host Response, Rana Sali̇hoğlu, Fati̇h Saraçoğlu, Mustafa Si̇bai̇, Tali̇p Zengi̇n, Başak Abak Masud, Onur Karasoy, Tuğba Önal Süzek

Turkish Journal of Biology

Background/aim: Understanding the mechanism of host transcriptomic response to infection by the SARS-CoV-2 virus is crucial, especially for patients suffering from long-term effects of COVID-19, such as long COVID or pericarditis inflammation, potentially linked to side effects of the SARS-CoV-2 spike proteins. We conducted comprehensive transcriptome and enrichment analyses on lung and peripheral blood mononuclear cells (PBMCs) infected with SARS-CoV-2, as well as on SARS-CoV and MERS-CoV, to uncover shared pathways and elucidate their common disease progression and viral replication mechanisms. Materials and methods: We developed CompCorona, the first interactive online tool for visualizing gene response variance among the family …

Physicochemical Differences Between Camelid Single-Domain Antibodies And Mammalian Antibodies, Nazli Eda Eski̇er, Doğa Eski̇er, Esi̇n Fi̇ruzan, Si̇bel Kalyoncu

Turkish Journal of Biology

Background/aim: In recent years, single-domain antibodies, also known as nanobodies, have emerged as an alternative to full immunoglobulin Gs (IgGs), due to their various advantages including increased solubility, faster clearance, and cheaper production. Nanobodies are generally derived from the variable domain of the camelid heavy-chain-only immunoglobulin Gs (hcIgGs). Due to the high sequence homology between variable heavy chains of camelids (VHHs) and humans (VHs), hcIgGs are ideal candidates for nanobody development. However, further examination is needed to understand the structural differences between VHs and VHHs. This analysis is essential for nanobody engineering to mitigate potential immunogenicity while preserving stability, functionality, …