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Life Sciences

Theses/Dissertations

2022

Conservation

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Eavesdropping On Animals: Can Bioacoustics Help Save Species?, Zoe Grueskin Dec 2022

Eavesdropping On Animals: Can Bioacoustics Help Save Species?, Zoe Grueskin

Capstones

Around the world, scientists are using sound to study the natural world in a growing field called bioacoustics. Researchers are eavesdropping on frogs and fish, elephants and earthworms, and many hope what they hear can inform and inspire conservation action around the world. From the field’s auspicious beginning with accidentally-recorded whales, to researchers today listening to locations as diverse as the Arctic seafloor and India’s Western Ghats mountain range, this capstone project explores the potential — and limitations — of conservation bioacoustics. Read the story, see photos and listen to audio pieces featuring three bioacousticians and their field recordings here: …


Effects Of Soil Management Practices On Water Infiltration And Maize Yield To Improve Mississippi River Valley Alluvial Aquifer Sustainability, Jacob Rix Dec 2022

Effects Of Soil Management Practices On Water Infiltration And Maize Yield To Improve Mississippi River Valley Alluvial Aquifer Sustainability, Jacob Rix

Theses and Dissertations

Surface sealing and hardpans in loam soils are problematic in the Mid-South U.S. because of intense tillage. Two experiments quantified the effects of soil management practices on infiltration and maize yield in loam soils. The first study measured the impacts of in-row subsoiling frequency × furrow irrigation frequency. In-row subsoiling significantly improved the infiltration of irrigation but not the infiltration of precipitation. In-row subsoiling with low irrigation frequency is optimal to achieve profitable maize yields while encouraging groundwater conservation. In the second study, six soil management treatments were imposed. For single-ring infiltrometer tests, infiltration rates were different between the two …


Eat Your Invasives: A Practical And Historical Analysis Of Foraging For Invasive Foods, Grace Hartman Dec 2022

Eat Your Invasives: A Practical And Historical Analysis Of Foraging For Invasive Foods, Grace Hartman

Honors Projects

This paper discusses both the historical and modern role of foraging and why people may decide to forage, as well as barriers new foragers may face and how they can be overcome. Furthermore, the paper discusses how foraging for invasive species can be used as a method of conservation and how simple foraging can be encouraged for this reason.


Population Demography, Spatial Ecology, And Habitat Use Of The Florida Box Turtle (Terrapene Bauri) On A Barrier Island, Michael D. Mills Nov 2022

Population Demography, Spatial Ecology, And Habitat Use Of The Florida Box Turtle (Terrapene Bauri) On A Barrier Island, Michael D. Mills

USF Tampa Graduate Theses and Dissertations

Turtles are one the most threatened vertebrate groups in the world due to anthropogenic threats such as habitat loss and overexploitation. In addition to occupying a range that has been vulnerable to major habitat loss, the Florida box turtle (Terrapene bauri) is particularly at risk of overexploitation due to its popularity in the pet trade. Sanibel Island is a barrier island in southwest Florida that has experienced major habitat loss and is the site of a recent poaching event. In response to these threats, studies of both the population demography and spatial ecology were conducted on Sanibel’s Florida box turtle …


Temperature Affects Nest Box Occupancy, Nest Success, And Nestling Size In A Southeastern Population Of Eastern Bluebirds (Sialia Sialis), Christopher G. Horacek Nov 2022

Temperature Affects Nest Box Occupancy, Nest Success, And Nestling Size In A Southeastern Population Of Eastern Bluebirds (Sialia Sialis), Christopher G. Horacek

Biology Theses

Given the critical role that temperature plays in avian reproductive biology, rising temperatures as a result of global climate change will likely impact reproductive success of many bird populations. Secondary cavity nesting birds, many of which rely on artificial nest boxes to maintain population levels, may be particularly at risk because increased temperatures inside nest boxes can determine whether nest boxes are selected, reduce nest success, and/or negatively affect the growth and survival of offspring. We examined the effect of nest box color on nest box temperature and the influence of nest box temperature, nest box color, entrance orientation, and …


Determination Of Atlantic Shortfin Mako Shark (Isurus Oxyrinchus) Population Genetic Structure And Comparison Of Mitogenomic Markers, Marissa Mehlrose Aug 2022

Determination Of Atlantic Shortfin Mako Shark (Isurus Oxyrinchus) Population Genetic Structure And Comparison Of Mitogenomic Markers, Marissa Mehlrose

All HCAS Student Capstones, Theses, and Dissertations

This study provides the first genomics-level, population structure and genetic diversity assessment of the shortfin mako (Isurus oxyrinchus) shark. The assessments were based on mitogenome sequences from makos distributed throughout the Atlantic Ocean, with Pacific mako mitogenomes used as a comparative outgroup. In addition to complete mitogenome-based analyses, I assessed individual mitochondrial coding gene and non-coding (Control Region) sequences for their comparative resolution properties as markers for revealing matrilineal population structure and genetic diversity. Sequencing of 125 makos in the western and eastern Atlantic across northern and southern hemispheres yielded 92 complete mitogenomes (16,698-16,702 bp) and 33 partial …


A Genomic Investigation Of Divergence Between Tuna Species, Pavel V. Dimens Aug 2022

A Genomic Investigation Of Divergence Between Tuna Species, Pavel V. Dimens

Dissertations

Effective management and conservation of marine pelagic fishes is heavily dependent on a robust understanding of their population structure, their evolutionary history, and the delineation of appropriate management units. The Yellowfin tuna (Thunnus albacares) and the Blackfin tuna (Thunnus atlanticus) are two exploited epipelagic marine species with overlapping ranges in the tropical and sub-tropical Atlantic Ocean. This work analyzed genome-wide genetic variation of both species in the Atlantic basin to investigate the occurrence of population subdivision and adaptive variation. A de novo assembly of the Blackfin tuna genome was generated using Illumina paired-end sequencing data and …


Flora Of Doe Mountain Recreation Area, Johnson County, Tennessee, Benjamin Mccullough Aug 2022

Flora Of Doe Mountain Recreation Area, Johnson County, Tennessee, Benjamin Mccullough

Electronic Theses and Dissertations

A botanical inventory of Doe Mountain Recreation Area (DMRA) in northeastern Tennessee was conducted to help guide conservation-based management. A total of 484 species were found in DMRA, comprising 94 families, and 285 genera, 10 species listed in the state rare plant list, and 76 exotic species. Two species, Liatris virgata and Lycopodiella inundata, were new state records. Water in the Lycopodiella seep was an order of magnitude more acid than at other sites. An analysis of the wildland-urban interface showed that only 13% of the area was classified as uninhabited. The inventory-invasion index, introduced to quantify the relative …


Evaluating Bat Roost Abundance: A Comparison Of Drone-Acquired Thermal Imagery And Acoustic Estimates With Visual Observations, Karah Jaffe Aug 2022

Evaluating Bat Roost Abundance: A Comparison Of Drone-Acquired Thermal Imagery And Acoustic Estimates With Visual Observations, Karah Jaffe

Electronic Theses and Dissertations

Roosts provide an opportunity to census philopatric populations of bats. Comparing the efficacy of traditional methods with novel methods can provide guidance on the use of new technologies in the field. This project aims to compare the count efficacy of external emergence methodologies, i.e., drone-acquired thermal imagery, acoustic estimates, and visual counts. Surveys were conducted ten nights at two emergence sites and synchronized to compare counts. Acoustic estimates could not be established as there was a weak prediction of the linear relationship between root-mean-square pressure and emergence count; therefore, this method was removed from the comparative analysis. A linear mixed-effects …


The Paleoecology Of High-Elevation Bison In The Greater Yellowstone Ecosystem And Implications For Modern Bison Conservation, Darian Bouvier Aug 2022

The Paleoecology Of High-Elevation Bison In The Greater Yellowstone Ecosystem And Implications For Modern Bison Conservation, Darian Bouvier

Electronic Theses and Dissertations

The national mammal of the United States, the American Bison (Bison bison) was once nearly extinct. Populations have recovered to the degree that thousands roam the Great Plains today. Due to their large numbers and body size, this species has an oversized impact on the ecological communities where it lives and is considered a keystone herbivore in modern North American grasslands. This study explores the detailed, seasonally resolved, paleoecology of seven bison from the Greater Yellowstone Ecosystem during the Late Holocene through stable isotope analyses and species niche modeling. Isotopic analyses of δ13C, δ15N, …


Survivorship Of Columbian Black-Tailed Deer In A Predator-Free Environment, Grace Hope Barthelmess May 2022

Survivorship Of Columbian Black-Tailed Deer In A Predator-Free Environment, Grace Hope Barthelmess

Honors Projects

Future management of Columbian black tailed deer (Odocoileus hemionus columbianus) populations requires an understanding of survivorship and potential drivers of mortality. Little is currently known about the survivorship of O. h. columbianus, specifically in a predator-free environment. Analyzing the survivorship of deer in these contexts may be crucial for wildlife conservation efforts throughout the United States, as it could provide insight into how deer populations may be impacted by lack of population control by predation. Here, I present age analysis of O. h. columbianus based on the cementum annuli of the lower first molar in 489 males …


Detection, Occupancy, Abundance, And Mercury Accumulation Of The Alligator Snapping Turtle (Macrochelys Temminckii) In Texas, David Rosenbaum May 2022

Detection, Occupancy, Abundance, And Mercury Accumulation Of The Alligator Snapping Turtle (Macrochelys Temminckii) In Texas, David Rosenbaum

Electronic Theses and Dissertations

Land use practices and physical alterations of ecosystems result in habitat loss and fragmentation, while chemical alterations, such as pollutant input, reduce habitat quality and health of exposed organisms. Here, I investigated the effects of watershed- and local-scale environmental variables on the occupancy, abundance, and mercury accumulation of a threatened aquatic species (Macrochelys temminckii, i.e., alligator snapping turtle) within the southwestern periphery of its distribution. Hierarchical modeling suggested the distribution of the species is more affected by watershed-scale land-cover than local habitat, and provided a baseline estimate of average species abundance across its range in eastern Texas. Abundance …


Natural Resource Decisions: Discount Rates, Time Horizons, And Evaluations, Amanda Hyman May 2022

Natural Resource Decisions: Discount Rates, Time Horizons, And Evaluations, Amanda Hyman

Doctoral Dissertations

As effects from climate change accelerate, there is a pressing need for research that can improve people’s lives and safeguard the environment. Billions of dollars are invested annually in such projects. To invest that money wisely, we need to understand the effects of assumptions that underpin decisions but often go unstated, such as assumptions about discount rates and time horizons. We also need to understand how project design choices affect the management of natural resources, prioritization of conservation actions, and success of climate adaptation projects. My dissertation explores these topics. I ask if and how local natural resource users and …


Identifying Optimal Stocking Strategies To Support Recovery Of An Endemic Lake Sucker, Dale R. Fonken May 2022

Identifying Optimal Stocking Strategies To Support Recovery Of An Endemic Lake Sucker, Dale R. Fonken

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Endemic fishes in the intermountain west experienced significant population declines in the 20th century due to a variety of disturbances, including habitat fragmentation, water development, and the introduction of non-native, predatory fish species. The combination of habitat degradation with increased predation risk can severely limit natural recruitment for native fish species, and in response, fisheries managers have employed a variety of recovery strategies to prevent extinction. Among the most prominent strategies is artificial propagation and subsequent release of individuals into the natural environment (i.e., stocking). Artificial propagation is an expensive endeavor, and when not coupled with a research component, can …


Efficacy Of Conservation Actions For Imperiled Colorado River Fishes In The Grand Canyon, Arizona, Brian D. Healy May 2022

Efficacy Of Conservation Actions For Imperiled Colorado River Fishes In The Grand Canyon, Arizona, Brian D. Healy

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Many fishes are critically imperiled, particularly in their native rivers, due to human water use and dam construction, which can dramatically alter habitats and block fish migratory routes. The introduction of invasive sport-fishes that prey on native fish further threatens native species that maybe restricted to only a single river basin (i.e., “endemic”). To preserve native fishes in river systems with degraded habitats, managers need to understand the effects of conservation actions to ensure limited resources are applied effectively. Two commonly applied native fish conservation actions include removal of invasive fishes, and translocations of native fish from one place into …


Molecular Evolution And Biogeography Of The New World Eptesicus Bats, Xueling Yi May 2022

Molecular Evolution And Biogeography Of The New World Eptesicus Bats, Xueling Yi

Theses and Dissertations

Molecular evolution refers to a broad field of studies ranging from microevolution (e.g., population genetics) to macroevolution (e.g., phylogeny), including the bridging field of phylogeography. In natural populations, molecular studies are also combined with biogeography that links biological diversity with geographic distributions to provide a comprehensive understanding of evolutionary processes. The field of molecular evolution has been largely advanced from early exploratory descriptions to statistical tests on biological hypotheses and integrative analyses using sophisticated modeling. However, studies of molecular evolution still face some unresolved questions and challenges, especially in non-model systems. For example, the application of new technology has largely …


Using Ai To Examine Nocturnal Moth Pollination, Conor Moriarty May 2022

Using Ai To Examine Nocturnal Moth Pollination, Conor Moriarty

Biological Sciences Undergraduate Honors Theses

The importance of insect-mediated agriculture cannot be understated especially in the wake of pollinator population declines. Most research of insect-mediated pollination is focused on diurnal pollinators like the honeybee (Apis mellifera). Deepening our understanding of how other pollinators, such as nocturnal pollinators, can benefit agriculture and ecosystems will be very important as honeybee populations decline. I explored nocturnal moth interactions with flowering apple flowers during their pollination season to better understand how these nocturnal pollinators interact with the plants. To accomplish this, I used a University of Arkansas farm area with a dedicated apple orchard. I gathered my raw data …


Spatiotemporal Factors Affecting The Occupancy And Phenology Of A Declining Songbird (Bachman's Sparrow - Peucaea Aestivalis) At The Western Extent Of Its Range, Liam G. Wolff May 2022

Spatiotemporal Factors Affecting The Occupancy And Phenology Of A Declining Songbird (Bachman's Sparrow - Peucaea Aestivalis) At The Western Extent Of Its Range, Liam G. Wolff

Electronic Theses and Dissertations

The Bachman’s Sparrow (Peucaea aestivalis) is a declining songbird that occurs throughout the southeastern United States. Bachman’s Sparrow is a Species of Greatest Conservation Need in Texas, but information crucial to management efforts, such as factors affecting their detectability and occupancy, is lacking. I investigated the predictors of Bachman’s Sparrow occupancy and phenology in Texas using detections from autonomous recording units coupled with site characteristics and weather data. My results indicate that Bachman’s Sparrow occupancy is associated with increasing herbaceous ground cover and decreasing basal area, distance to the nearest source population, and basal area when canopy height …


Behavioral Choices Of Apple Snails, Pomacea Maculata, Under Varied Chemical Landscapes, Andrea Adams Apr 2022

Behavioral Choices Of Apple Snails, Pomacea Maculata, Under Varied Chemical Landscapes, Andrea Adams

Theses

Habitat choice is a critical behavior for organisms to successfully survive and reproduce. These choices are dictated by available environmental information about potential predation risks or food patches that form the organism’s sensory landscape. This study specifically focused on the behavioral choices of two invasive apple snail (Pomacea maculata) populations exposed to varying predation threats. We collected snails from Florida and Alabama which were used in laboratory experiments with varied sensory landscapes. Trials consisted of controls with no cues (FL: n = 7, AL: n= 7), an attractive treatment with introduced food cues (FL: n = 4, AL: …


Ecology And Conservation Of Grey Crowned Cranes (Balearica Regulorum) In Tanzania, Bridget Amulike Mar 2022

Ecology And Conservation Of Grey Crowned Cranes (Balearica Regulorum) In Tanzania, Bridget Amulike

Doctoral Dissertations

Grey-crowned cranes (Balearica regulorum) are listed as endangered and their population throughout Africa has declined by 50% from the period of 1985–2004. The major causes for their population loss are mainly linked to habitat loss and the illegal capture of live birds and collection of their eggs and other parts. Currently, throughout Africa, little has been done to study and protect grey crowned cranes. In this study, I incorporated local people’s knowledge, using survey questionnaires to investigate the distribution of grey crowned cranes in Arusha, Kilimanjaro, Singida, and Mbeya Region in Tanzania. I also investigated the perception and attitudes …


Leveraging Herbaria Specimens: A New 3d Imaging Protocol And Analyses Of Diversity Of West Virginia Rosids, Zachary Scott Shamblin Jan 2022

Leveraging Herbaria Specimens: A New 3d Imaging Protocol And Analyses Of Diversity Of West Virginia Rosids, Zachary Scott Shamblin

Theses, Dissertations and Capstones

Herbaria are repositories of plant natural history, whose data can provide insights into the life histories of plant taxa over space and time. Recent initiatives to digitize herbarium data have made studies over broad geographic and taxonomic extents possible, with the ability of scientists to access data from large databases of herbaria. Most of the digitization initiatives have focused on flat 2D herbaria sheets, but herbaria also include 3D collections, such as fungi, mosses, lichens, and dry fruits. In Chapter 1 we propose an easy and cost-effective workflow that uses free photogrammetry software to produce 3D images of 3D herbaria …


The Role Of Edge Effects On Emerald Ash Borer Infestation And Forest Responses, Bronte Hoefer Jan 2022

The Role Of Edge Effects On Emerald Ash Borer Infestation And Forest Responses, Bronte Hoefer

Undergraduate Honors Theses

The emerald ash borer (EAB; Agrilus planipennis) is a buprestid beetle native to Asia, classified as an invasive species in North America. EAB infests trees of genus Fraxinus (ash) and has spread to 35 states since its introduction in the early to mid-1990s. Notably, EAB has the potential to functionally extirpate all native ash species in North America. Our study aims to characterize the ecological impacts of EAB infestation in the Roanoke Valley of Southwest Virginia, to quantify the impact of edge effects on EAB forest invasion and mortality of ash trees, as well as investigate the role that …


Public Perceptions Of Human Physical Interactions, Exhibition, And Conservation Of Tigers And Cheetahs, Abbie Knudsen Jan 2022

Public Perceptions Of Human Physical Interactions, Exhibition, And Conservation Of Tigers And Cheetahs, Abbie Knudsen

MSU Graduate Theses

Tigers and cheetahs are common in the pet trade, public exhibits, and hands-on encounters with the public. Poor regulation of these experiences has resulted in numerous incidents worldwide in which a person was seriously injured or killed by captive big cats. Additionally, concerns for animal welfare have been raised by industry professionals. Prior research on primates has demonstrated exposing people to photographs of cats in different backgrounds can influence their attitudes about animals in captivity, but no study has addressed whether visual images affect human attitudes toward big cats. I used a survey that asked a series of questions about …


Demographic Modeling Of Conservation Strategies For The Yosemite Toad (Anaxyrus Canorus), Corrina Rebecca Kamoroff Jan 2022

Demographic Modeling Of Conservation Strategies For The Yosemite Toad (Anaxyrus Canorus), Corrina Rebecca Kamoroff

Cal Poly Humboldt theses and projects

The Yosemite toad (Anaxyrus canorus) is an anuran species endemic to the Sierra Nevada in California that, like many amphibians globally, has suffered population declines. The documented decline in A. canorus populations across their historic range highlights the need for an effective management strategy to protect the species from future extirpation. For this study, I estimated survival rates of A. canorus using a Cormack-Jolly-Seber model populated with data from a demographic study. I then used a female-only post-birth pulse stochastic Lefkovitch matrix model using vital rates I estimated and from the literature to simulate the effect of different …


Effects Of Drought On Habitat Quality For Native Bees In Residential Gardens Of Claremont, Ca, Max Proctor Jan 2022

Effects Of Drought On Habitat Quality For Native Bees In Residential Gardens Of Claremont, Ca, Max Proctor

CMC Senior Theses

Over 1,500 of the 4000 bee species found in North America inhabit California. Native bees are declining however, largely due to climate change and agricultural intensification. Previous research shows that cities can sustain diverse bee communities, due to the diversity of ornamental flowers. Urban green space represents an opportunity for native bee conservation. Residential gardens provide lots of green space and are urban pollinator hotspots. Managing yards for increased floral resources and nesting habitat can benefit native bee communities. Turfgrass provides few floral or nesting resources and negatively correlates with bee diversity. The 2011-2017 California drought caused many homeowners to …


Conservation Of Lapping Mechanism In Marsupials, Angela Brkic Jan 2022

Conservation Of Lapping Mechanism In Marsupials, Angela Brkic

Williams Honors College, Honors Research Projects

The oral behavior of drinking includes interactions between the tongue, jaw, and liquid being ingested to provide hydration to the animal. Different mechanisms may be used to ingest liquid such as lapping, licking, or sucking. The objective of the study was to compare the mechanism of lapping across marsupial species through comparison of the length of gape cycle, and the amplitude of jaw pitch and tongue protraction between the two marsupial species, Didelphis virginiana and Monodelphis domestica. I hypothesized that there would be no differences in any of the variables for the lapping mechanism between species. Previous work demonstrates …


Regenerative Agriculture Effects On Invertebrate And Bird Communities And Insect-Provided Ecosystem Services, Alex Michels Jan 2022

Regenerative Agriculture Effects On Invertebrate And Bird Communities And Insect-Provided Ecosystem Services, Alex Michels

Electronic Theses and Dissertations

Conventional agricultural practices can have unintended consequences on the environment and wildlife. Insects and birds are declining at rapid rates around the world, and the current conventional agricultural paradigm is a major driver through habitat loss and the intensification of production. Invertebrates in agroecosystems provide services to both farmers and the rest of society. Regenerative systems may promote the functioning of an agroecosystem by influencing invertebrate abundance, diversity, and ecosystem services and mitigate bird and insect declines through conservation practices that increase soil health, reduce disturbances, and increase biological diversity. Here I address knowledge gaps of the effects of regenerative …


Where Should Conservation Draw The Line And When Should It Push Forward, Jessica L. Mejia Jan 2022

Where Should Conservation Draw The Line And When Should It Push Forward, Jessica L. Mejia

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.


Mhc Diversity Analysis Of Spheniscus Demersus For In Situ And Ex Situ Populations, Antonieta Van Den Berg Monsalve Jan 2022

Mhc Diversity Analysis Of Spheniscus Demersus For In Situ And Ex Situ Populations, Antonieta Van Den Berg Monsalve

Undergraduate Honors Thesis Projects

The South African Penguin has been listed as endangered by the International Union for Conservation of Nature. Major histocompatibility complex (MHC) alleles provide valuable statistics because of their variation in terms of vertebrate genomes and are pertinent to immune and reproductive health. A greater number of MHC alleles correlates with survivability of a population because the genes control the immune and reproductive systems. Legacy research by Otterbein alumni and Dr. Simon Lawrance studied MHC samples from wild, in situ, and captive, ex situ, penguin populations. By comparing these populations' major histocompatibility complexes through biostatistical analysis, contributions to conservation of the …


Effects Of Conservation Management Practices On Soil Health And Crop Yields In Eastern South Dakota, Alex Mclain Jan 2022

Effects Of Conservation Management Practices On Soil Health And Crop Yields In Eastern South Dakota, Alex Mclain

Electronic Theses and Dissertations

Conservation management practice adoption on agricultural land has increased in recent years due to increasing public and private investment. The anticipated impact of increasing conservation management practice adoption are reduced greenhouse gas emissions and improved soil, water, and air quality. Understanding how these conservation management practices affect agricultural producers economically is vital to properly incentivize these practices. The existing literature on how conservation management practices affect soil health and crop yields is mixed and generally has been conducted on experimental research stations. These studies may not fully account for the on-farm effects of conservation management practices. The objectives of this …