Digital Commons Network^™

United States Midwest Soil And Weather Conditions Influence Anaerobic Potentially Mineralizable Nitrogen, Jason D. Clark, Kristen S. Veum, Fabian G. Fernandez, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, Carrie A.M. Laboski, Emerson D. Nafziger, John E. Sawyer, John F. Shanahan

Jason Clark

Nitrogen provided to crops through mineralization is an important factor in N management guidelines. Understanding of the interactive effects of soil and weather conditions on N mineralization needs to be improved. Relationships between anaerobic potentially mineralizable N (PMN_an) and soil and weather conditions were evaluated under the contrasting climates of eight US Midwestern states. Soil was sampled (0–30 cm) for PMN_an analysis before pre-plant N application (PP_0N) and at the V5 development stage from the pre-plant 0 (V5_0N) and 180 kg N ha⁻¹ (V5_180N) rates and incubated for 7, 14, …

United States Midwest Soil And Weather Conditions Influence Anaerobic Potentially Mineralizable Nitrogen, Jason D. Clark, Kristen S. Veum, Fabián G. Fernández, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, Carrie A. M. Laboski, Emerson D. Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

John E. Sawyer

Nitrogen provided to crops through mineralization is an important factor in N management guidelines. Understanding of the interactive effects of soil and weather conditions on N mineralization needs to be improved. Relationships between anaerobic potentially mineralizable N (PMN_an) and soil and weather conditions were evaluated under the contrasting climates of eight US Midwestern states. Soil was sampled (0–30 cm) for PMN_an analysis before pre-plant N application (PP_0N) and at the V5 development stage from the pre-plant 0 (V5_0N) and 180 kg N ha⁻¹ (V5_180N) rates and incubated for 7, 14, …

Intrinsic Challenges In Ancient Microbiome Reconstruction Using 16s Rrna Gene Amplification, Kirsten Ziesemer, Allison Mann, Krithivasan Sankaranarayanan, Hannes Schroeder, Andrew T. Ozga, Bernd W. Brandt, Egija Zaura, Andrea Waters-Rist, Menno Hoogland, Domingo C. Salazar-Garcia, Mark Aldenderfer, Camilla Speller, Jessica Hendy, Darlene A. Weston, Sandy J. Macdonald, Gavin H. Thomas, Matthew J. Collins, Cecil M. Lewis Jr., Corinne Hofman, Christina Warinner

Andrew Ozga

To date, characterization of ancient oral (dental calculus) and gut (coprolite) microbiota has been primarily accomplished through a metataxonomic approach involving targeted amplification of one or more variable regions in the 16S rRNA gene. Specifically, the V3 region (E. coli341–534) of this gene has been suggested as an excellent candidate for ancient DNA amplification and microbial community reconstruction. However, in practice this metataxonomic approach often produces highly skewed taxonomic frequency data. In this study, we use non-targeted (shotgun metagenomics) sequencing methods to better understand skewed microbial profiles observed in four ancient dental calculus specimens previously analyzed by amplicon …

Does Detection Range Matter For Inferring Social Networks In A Benthic Shark Using Acoustic Telemetry?, Johann Mourier, Nathan Charles Bass, Tristan L. Guttridge, Joanna Day, Culum Brown

Culum Brown, PhD

Accurately estimating contacts between animals can be critical in ecological studies such as examining social structure, predator–prey interactions or transmission of information and disease. While biotelemetry has been used successfully for such studies in terrestrial systems, it is still under development in the aquatic environment. Acoustic telemetry represents an attractive tool to investigate spatio-temporal behaviour of marine fish and has recently been suggested for monitoring underwater animal interactions. To evaluate the effectiveness of acoustic telemetry in recording interindividual contacts, we compared co-occurrence matrices deduced from three types of acoustic receivers varying in detection range in a benthic shark species. Our …

Decadal Effects Of Thinning On Understory Light Environments And Plant Community Structure In A Subtropical Forest, Ho-Chen Tsai, Jyh-Min Chiang, Ryan Mcewan, Teng-Chiu Lin

Ryan McEwan

Canopy-opening disturbance such as thinning has immediate and substantive effects on understory microclimate and therefore the establishment and growth of understory plants. A large number of studies have reported the effects of thinning on tree growth, but few studies have examined long-term effects of thinning on understory light environments and species and functional diversity of understory plants. Even less is known whether the change in understory plant community structure observed following canopy disturbance is short-lived and would diminish as the canopy closes or a long lasting due to legacy effects. We examined the effects of an experimental removal of 25% …

Structural Response Of Caribbean Dry Forests To Hurricane Winds: A Case Study From Guanica Forest, Puerto Rico, Skip Van Bloem, Ariel E. Lugo, Peter G. Murphy

Skip Van Bloem

Tropical dry forests in the Caribbean have an uniquely short, shrubby structure with a high proportion of multiple-stemmed trees compared to dry forests elsewhere in the Neotropics. Previous studies have shown that this structure can arise without the loss of main stems from cutting, grazing, or other human intervention. The Caribbean has a high frequency of hurricanes, so wind may also influence forest stature. Furthermore, these forests also tend to grow on soils with low amounts of available phosphorus, which may also influence structure. The objective of this study was to assess the role of high winds in structuring dry …

Encoding Of Emotional Valence In Wild Boar (Sus Scrofa) Calls, Anne-Laure Maigrot, Edna Hillmann, Elodie Briefer

Elodie Briefer, PhD

Measuring emotions in nonhuman mammals is challenging. As animals are not able to verbally report how they feel, we need to find reliable indicators to assess their emotional state. Emotions can be described using two key dimensions: valence (negative or positive) and arousal (bodily activation or excitation). In this study, we investigated vocal expression of emotional valence in wild boars (Sus scrofa). The animals were observed in three naturally occurring situations: anticipation of a food reward (positive), affiliative interactions (positive), and agonistic interactions (negative). Body movement was used as an indicator of emotional arousal to control for the effect of …

Five-Year Response Of Spontaneous Vegetation To Removal Of Invasive Amur Bush Honeysuckle Along An Urban Creek, Rebecca W. Dolan, Kelly H. Brown

Rebecca W. Dolan

Non-native invasive species have major impacts on landscapes worldwide, but their effects in urban areas are not well documented. We quantified the response of naturally regenerating vegetation along an urban creek to removal of the invasive shrub Lonicera maackii (Amur Bush Honeysuckle). Over the 5-year study, species richness more than doubled. Most new plants were native, disturbance-adapted, early successional species. Trend analysis of function traits revealed annuals that rely on seed dispersal by wind or externally on animals were significantly overrepresented among new plants in comparison to their proportion in the countywide species pool. Increased species richness did not result …

What Controls Tropical Reef Fish Populations: Recruitment Or Benthic Mortality? An Example In The Caribbean Reef Fish Haemulon Flavolineatum, M. J. Shulman, John C. Ogden

John Ogden

Recruitment from a planktonic larval stage has been proposed to be an important factor in limiting populations of marine organisms, particularly tropical reef fishes. We monitored recruitment and population densities of juvenile size classes In French grunt Haemulon flavolineatum (Haemulidae) from October 1978 through December 1980 In a portion of Tague Bay, St. Croix, U. S. Virgin Islands. Within our study area, 95 % of new recruits settled onto the sand and seagrass lagoon floor and within a few weeks migrated to nearby reefs; the remaining 5'10 settled directly onto reef structures. Mean annual recruitment rate was 1.8 recruits per …

Cross-Modal Recognition Of Familiar Conspecifics In Goats, Benjamin J. Pitcher, Elodie F. Briefer, Luigi Baciadonna, Alan G. Mcelligott

Elodie Briefer, PhD

When identifying other individuals, animals may match current cues with stored information about that individual from the same sensory modality. Animals may also be able to combine current information with previously acquired information from other sensory modalities, indicating that they possess complex cognitive templates of individuals that are independent of modality. We investigated whether goats (Capra hircus) possess cross-modal representations (auditory–visual) of conspecifics. We presented subjects with recorded conspecific calls broadcast equidistant between two individuals, one of which was the caller. We found that, when presented with a stablemate and another herd member, goats looked towards the caller sooner and …

The Dry Season Shuffle: Gorges Provide Refugia For Animal Communities In Tropical Savannah Ecosystems, J. Sean Doody, Simon Clulow, Geoff Kay, Domenic D'Amore, David Rhind, Steve Wilson, Ryan Ellis, Christina Castellano, Colin Mchenry, Michelle Quayle, Kim Hands, Graeme Sawyer, Michael Bass

J. Sean Doody

In the wet-dry tropics, animal species face the major challenges of acquiring food, water or shelter during an extended dry season. Although large and conspicuous animals such as ungulates and waterfowl migrate to wetter areas during this time, little is known of how smaller and more cryptic animal species with less mobility meet these challenges. We fenced off the entire entrance of a gorge in the Australian tropical savanna, offering the unique opportunity to determine the composition and seasonal movement patterns of the small vertebrate community. The 1.7 km-long fence was converted to a trapline that was deployed for 18-21 …

The Dry Season Shuffle: Gorges Provide Refugia For Animal Communities In Tropical Savannah Ecosystems, J. Sean Doody, Simon Clulow, Geoff Kay, Domenic D'Amore, David Rhind

J. Sean Doody

In the wet-dry tropics, animal species face the major challenges of acquiring food, water or shelter during an extended dry season. Although large and conspicuous animals such as ungulates and waterfowl migrate to wetter areas during this time, little is known of how smaller and more cryptic animal species with less mobility meet these challenges. We fenced off the entire entrance of a gorge in the Australian tropical savanna, offering the unique opportunity to determine the composition and seasonal movement patterns of the small vertebrate community. The 1.7 km-long fence was converted to a trapline that was deployed for 18-21 …

Stable Isotopic Niche Predicts Fitness Of Prey In A Wolf–Deer System, C. T. Darimont, P. C. Paquet, T. E. Reimchen

Chris Darimont, Ph.D.

Interindividual variation in niche presents a potentially central object on which natural selection can act. This may have important evolutionary implications because habitat use governs a suite of selective forces encountered by foragers. In a free‐living native black‐tailed deer, Odocoileus hemionus, population from coastal British Columbia, we used stable isotope analysis to identify individual variation in foraging niche and investigated its relationship to fitness. Using an intragenerational comparison of surviving and nonsurviving O. hemionus over 2 years of predation by wolves, Canis lupus, we detected resource‐specific fitness. Individuals with isotopic signatures that suggested they foraged primarily in cedar ( …

A Review Of Subtropical Community Resistance And Resilience To Extreme Cold Spells, Ross E. Boucek, Evelyn E. Gaiser, H. Liu, Jennifer S. Rehage

Evelyn E. Gaiser

Forecasted changes in global climate predict not only shifts in average conditions but also changes in the frequency and intensity of climate extremes. In the subtropics, the passage of extreme cold spells functions as a major structuring force for ecological communities, and can incur substantial losses to biodiversity, agriculture, and infrastructure. If these events persist in the future, it is likely that their effects on subtropical communities and ecosystems will become more pronounced, as tropical species migrate poleward. Recent extreme cold spells in subtropical China (2008) and United States (2010) occurred in ecosystems that are the subject of long-term ecological …

Mode And Rate Of Evolution Of Haemosporidian Mitochondrial Genomes: Timing The Radiation Of Avian Parasites, Patricia Parker, M Andreína Pacheco, Nubia E. Matta, Gediminas Valkiūnas, Beatriz Mello, Craig E. Stanley Jr, Miguel Lentino, Maria Alexandra Garcia-Amado, Michael Cranfield, Sergei L Kosakovsky Pond, Ananias A. Escalante

Patricia Parker

Cross-Modal Recognition Of Familiar Conspecifics In Goats, Benjamin J. Pitcher, Elodie F. Briefer, Luigi Baciadonna, Alan G. Mcelligott

Alan G. McElligott, PhD

When identifying other individuals, animals may match current cues with stored information about that individual from the same sensory modality. Animals may also be able to combine current information with previously acquired information from other sensory modalities, indicating that they possess complex cognitive templates of individuals that are independent of modality. We investigated whether goats (Capra hircus) possess cross-modal representations (auditory–visual) of conspecifics. We presented subjects with recorded conspecific calls broadcast equidistant between two individuals, one of which was the caller. We found that, when presented with a stablemate and another herd member, goats looked towards the caller sooner and …

Surface-Soil Properties Of Alder Balds With Respect To Grassy And Rhododendron Balds On Roan Mountain, North Carolina—Tennessee, James T. Donaldson, Zachary C. Dinkins, Foster Levy, Arpita Nandi

Foster Levy

We analyzed soils in Alder Bald, Grassy Bald, and Rhododendron Bald communities on Roan Mountain to infer the influence of vegetation on soil and to help guide management strategies. In all vegetation types, soils were acid (pH = 4–5) sandy loams. We found vegetation-associated differences for organic content, cation exchange capacity, acidity, two plant macronutrients (K, Mg), and three cations (Fe, Na, Zn). We predicted that nitrogen compounds would be highest in the Alder Bald because Alnus viridis ssp. crispa (Green Alder) can harbor nitrogen-fixing bacteria. Organic content was highest at the alder-bald sites, ammonium was similar among vegetation types, …

Pattern And Rate Of Decline Of A Population Of Carolina Hemlock (Tsuga Caroliniana Engelm.) In North Carolina, Foster Levy, Elaine S. Walker

Foster Levy

We monitored a population of Carolina Hemlocks in northwestern North Carolina for four years to examine the rate and pattern of decline in response to infestation by Adelges tsugae (Hemlock Woolly Adelgid). Our yearly census of hemlock condition and severity of the adelgid infestation included trees of all sizes. We estimated declines in condition as the portions of the leaf canopy that were lost. Initially, infestation occurred throughout the population but was severe in only a small cluster of individuals. Within 1 year, the area of severe infestation increased in size to encompass 48% of the population. In another region …

A New Species Of Euscorpius Thorell, 1876 From Peloponnese, Greece (Scorpiones: Euscorpiidae, Gioele Tropea, Victor Fet, Aristeidis Parmakelis, Panayiota Kotsakiozi, Iasmi Stathi

Victor Fet

A new scorpion species, Euscorpius (Euscorpius) erymanthius sp. n., is described from Peloponnese, Greece (Erymanthos Mts.), based on genetic and morphological evidence. It is characterized by small size, light brown to reddish color, and a standard trichobothrial pattern (Pv = 8–9, et = 7–6, em = 4 and eb = 4). In a phylogeny based on multiple DNA markers, the new species groups close with E. corcyraeus Tropea et Rossi, 2012 from Corfu (Kerkyra) Island.

Beyond Bivariate Correlations: Three-Block Partial Least Squares Illustrated With Vegetation, Soil, And Topography, Daehyun Kim, Thomas J. Dewitt, César S. B. Costa, John A. Kupfer, Ryan W. Mcewan, J. Anthony Stallins

Ryan McEwan

Ecologists, particularly those engaged in biogeomorphic studies, often seek to connect data from three or more domains. Using three-block partial least squares regression, we present a procedure to quantify and define bi-variance and tri-variance of data blocks related to plant communities, their soil parameters, and topography. Bi-variance indicates the total amount of covariation between these three domains taken in pairs, whereas tri-variance refers to the common variance shared by all domains. We characterized relationships among three domains (plant communities, soil properties, topography) for a salt marsh, four coastal dunes, and two temperate forests spanning several regions in the world. We …

Rapid Recovery Of A Coral Reef At Darwin Island, Galapagos Island, Peter W. Glynn, Bernhard Riegl, Adrienne M. S. Correa, Iliana B. Baums

Bernhard Riegl

Surveys at Darwin Island in 2006 and 2007 have demonstrated that this northernmost Galapagos Islands coral reef has recovered significantly since the 1982-3 El Nino event. When first surveyed in 1975, this structural reef exhibited actively accreting frameworks of pocilloporid and poritid corals. The coral suffered severe mortality in 1983, resulting in the near total loss of pocilloporids and extensive partial mortality of poritid corals. Large sections of the reef had not recovered by 1992 and dead frameworks were subject to bio-erosion, although small numbers of sexual recruits of pocilloporid corals and numerous recruits plus regenerating patches of Porites lobata …

Environmental Impacts Of Dredging And Other Sediment Disturbances On Corals: A Review, Paul. L. A. Erftemeijer, Bernhard Riegl, Bert W. Hoeksema, Peter A. Todd

Bernhard Riegl

A review of published literature on the sensitivity of corals to turbidity and sedimentation is presented, with an emphasis on the effects of dredging. The risks and severity of impact from dredging (and other sediment disturbances) on corals are primarily related to the intensity, duration and frequency of exposure to increased turbidity and sedimentation. The sensitivity of a coral reef to dredging impacts and its ability to recover depend on the antecedent ecological conditions of the reef, its resilience and the ambient conditions normally experienced. Effects of sediment stress have so far been investigated in 89 coral species (∼10% of …

Animal Minds, Cognitive Ethology, And Ethics, Colin Allen, Marc Bekoff

Marc Bekoff, PhD

Our goal in this paper is to provide enough of an account of the origins of cognitive ethology and the controversy surrounding it to help ethicists to gauge for themselves how to balance skepticism and credulity about animal minds when communicating with scientists. We believe that ethicists’ arguments would benefit from better understanding of the historical roots of ongoing controversies. It is not appropriate to treat some widely reported results in animal cognition as if their interpretations are a matter of scientific consensus. It is especially important to understand why loose references to ‘‘cognitive ethology’’ by philosophers can signal ignorance …

Microhabitat Use Affects Brain Size And Structure In Intertidal Gobies, Gemma E. White, Culum Brown

Culum Brown, PhD

The ecological cognition hypothesis poses that the brains and behaviours of individuals are largely shaped by the environments in which they live and the associated challenges they must overcome during their lives. Here we examine the effect of environmental complexity on relative brain size in 4 species of intertidal gobies from differing habitats. Two species were rock pool specialists that lived on spatially complex rocky shores, while the remainder lived on dynamic, but structurally simple, sandy shores. We found that rock pool-dwelling species had relatively larger brains and telencephalons in particular, while sand-dwelling species had a larger optic tectum and …

The Friesner Herbarium (But) Of Butler University, Rebecca Dolan

Rebecca W. Dolan

The Friesner Herbarium (BUT) of Butler University is a collection of over 100,000 specimens built from the personal herbarium of Ray C. Friesner. He and other botanists at Butler amassed one of the largest and most complete collections of Indiana plants. Active exchange from the 1920’s through the 1940’s increased the holdings of plants from other states. Although the collection does not contain many type specimens, it is rich in vouchers from floristic and ecological studies conducted in the first half of the 20th century and published in the scientific journal,Butler University Botanical Studies.

Physiological And Genetic Correlates Of Boldness: Characterising The Mechanisms Of Behavioural Variation In Rainbow Trout, Oncorhynchus Mykiss, Jack S. Thomson, Phillip C. Watts, Tom G. Pottinger, Lynne U. Sneddon

Lynne Sneddon, PhD

Bold, risk-taking animals have previously been putatively linked with a proactive stress coping style whereas it is suggested shyer, risk-averse animals exhibit a reactive coping style. The aim of this study was to investigate whether differences in the expression of bold-type behaviour were evident within and between two lines of rainbow trout, Oncorhynchus mykiss, selectively bred for a low (LR) or high (HR) endocrine response to stress, and to link boldness and stress responsiveness with the expression of related candidate genes. Boldness was determined in individual fish over two trials by measuring the latency to approach a novel object. Differences …

From Shelf To Shelf: Assessing Historical And Contemporary Genetic Differentiation And Connectivity Across The Gulf Of Mexico In Gag, Mycteroperca Microlepis, Nathaniel Kenneth Jue, Thierry Brule, Felicia C. Coleman, Christopher C. Koenig

Nathaniel Jue

The Global Decline Of Reptiles, Deja’ Vu Amphibians, J. Whitfield Gibbons, David E. Scott, Travis J. Ryan, Kurt A. Buhlmann, Tracey D. Tiuberville, Brian S. Metts, Judith L. Greene, Tony Mills, Yale Leiden, Sean Poppy, Christopher T. Winne

Travis J. Ryan

Reptile species are declining on a global scale. Six significant threats to reptile populations are habitat loss and degradation, introduced invasive species, environmental pollution, disease, unsustainable use, and global climate change.

Annual Variation In Autumn Migration Phenology And Energetic Condition At A Stopover Site In The Western United States, Robert A. Miller, Jay D. Carlisle, Neil Paprocki, Gregory S. Kaltenecker, Julie A. Heath

Robert Miller

Climate change is having a dramatic effect on many migratory species. Changes in climate may lead to changes in food availability or other proximate cues that affect migratory behavior. We used 13 years (2000–2012) of data on songbird banding and raptor migration counts and captures during autumn migration in the intermountain West to evaluate whether regional temperature or precipitation or hemispheric climate indices predicted autumn migratory timing and energetic condition. We examined overall trends and evaluated the effects of diet and migratory distance on phenology and conditional responses. For the 13-year study period, no temperature, precipitation, or climate index trends …

An Application Of Recreation Resource Assessment Techniques To Inform Management Action In An Urban-Proximate Natural Area, Ashley D'Antonio, Christopher Monz, Nell Larson, Amy Rohman

Christopher Monz

No abstract provided.