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Biological Pretreatment Of Biomass For Enhanced Biogas Production, Skylar F. Van Horne
Biological Pretreatment Of Biomass For Enhanced Biogas Production, Skylar F. Van Horne
Undergraduate Honors Theses
The biogas output efficiency of controlled anaerobic digestion (AD) can be enhanced by several different pretreatment methods to produce renewable energy. According to the literature, there are pros and cons to each pretreatment method. Biological pretreatment provides environmentally safe and renewable means for enhancing biodegradability and net energy output. Current research has yet to reliably demonstrate the ability of bacterial strains, such as Caldicellulosiruptor bescii (C. bescii), to digest common waste substrates in efficient ways. Novel methods in key intermediate molecular quantification and alkalinity tracking are used here to explore C. bescii’s ability to digest lignocellulosic material in …
Technology Aiding In Neonatal Lung Developmental Care, Megan Kirk
Technology Aiding In Neonatal Lung Developmental Care, Megan Kirk
Undergraduate Honors Theses
In this paper, old as well as new technological findings to decrease premature infant mortality are reviewed. This paper discusses fetal development throughout pregnancy from conception to full-term status as well as fetal lung development specifically from conception until full-term status. Several ideas to rapidly develop and mature fetal lungs are discussed such as mothers ingesting artificial surfactant supplements, either independently or coupled with antenatal corticosteroids, as well as intra-amniotic instillation prior to 28 weeks gestational. Drawbacks regarding these two are mentioned as well such as the fetus’s lungs not being mature enough to use the artificial surfactant leading into …
Diverse Community Of Arsenic Resistant Bacteria Display Arsenate Reducing Capabilities, Stephanie Maeda
Diverse Community Of Arsenic Resistant Bacteria Display Arsenate Reducing Capabilities, Stephanie Maeda
Undergraduate Honors Theses
Naturally found in soil and water environments arsenic is toxic to many organisms, carcinogenic to humans, and poses a significant public health risk. Yet communities of bacteria found thriving in arsenic ridden environments have evolved mechanisms to tolerate and exploit both oxidation states of this heavy metal (arsenite and arsenate). As the site of an old arsenic mine, Black Mountain Open Space Park in San Diego, California has yielded concentrations of arsenic in the soil between 111-14,800 ppm. Exceeding average arsenic soil concentrations and levels considered safe in the environment by the World Health Organization, we sought to characterize the …
Human Health And Economic Costs Of Air Pollution In Utah: An Expert Assessment, Isabella Errigo
Human Health And Economic Costs Of Air Pollution In Utah: An Expert Assessment, Isabella Errigo
Undergraduate Honors Theses
Recent scholarship has found that air pollution damages our health and economy more than previously understood, with approximately one in four deaths associated with exposure to air pollution globally. However, translating these research findings into policy and behavior change at local levels remains a major challenge, partially because of mismatch between the scale of air pollution research (often national or global) and governance frameworks (typically local to regional). Here, we used an expert assessment to bridge this research-policy divide in Utah, USA. We combined quantitative and qualitative input from 23 Utah-specific researchers and specialists, asking for estimates of human health …
Building An Ins-1 Cdna Library For A Genome-Wide Crispr-Cas9 Screen, Idongesit Ekpo
Building An Ins-1 Cdna Library For A Genome-Wide Crispr-Cas9 Screen, Idongesit Ekpo
Undergraduate Honors Theses
By the year 2040, an estimated 642 million people are expected to have diabetes globally. Diabetes results from an elevation of metabolic stressors, such as glucotoxicity, lipotoxicity, oxidative stress and apoptosis. In type 2 diabetes, these stressful conditions contribute to the malfunction and loss of functional insulin-producing β-cells. Current treatment methods for diabetes include insulin therapy, islet transplant and anti-diabetes medication. These treatments are not curative and ignore other factors that contribute to the pathogenesis of diabetes beyond insulin resistance and islet β-cell failure. Previous research on β-cells has focused on ways to replace functional β-cell mass, trigger β-cell proliferation, …
Predictors Of Psychosocial And Physiological Distress In Colorectal Cancer Patients, Hyrum Eddington
Predictors Of Psychosocial And Physiological Distress In Colorectal Cancer Patients, Hyrum Eddington
Undergraduate Honors Theses
Distress among cancer patients has been broadly accepted as an important indicator of patient well-being. However, questions remain such as what patient characteristics are associated with high distress and whether patient-reported distress is correlated with distress biomarkers. To answer these questions, we performed a survey study of 238 colorectal patients in which we assessed patient-reported distress, possible contributors to that distress, and patient anxiety and depression. We also abstracted demographic and clinical information from patient charts and collected measures for salivary cortisol and sarcopenia. We conducted bivariate statistical analyses between patient demographics, clinical factors, and psychosocial measures with our three …
Barriers To Prenatal Care For Hispanic Immigrants In Utah County, Maren Monson
Barriers To Prenatal Care For Hispanic Immigrants In Utah County, Maren Monson
Undergraduate Honors Theses
This thesis examines four barriers that may inhibit Hispanic immigrant women from receiving care in Utah County, including language, insurance, documentation, and education. Six clinics in Utah County were contacted to determine how the services they provide account for these barriers. Nine Hispanic women were then interviewed about their experience with prenatal care in Utah County with respect to the four barriers. Interpretation services were offered by each clinic, though none of the women interviewed used professional interpretation—either their husbands translated, or they met with a Spanish-speaking doctor. Every clinic accepted insurance and Medicaid, while one clinic had a flexible …
Low-Cost Diagnostics: Using Paper As A Material And Pens As An Instrument, Annie Armitstead
Low-Cost Diagnostics: Using Paper As A Material And Pens As An Instrument, Annie Armitstead
Undergraduate Honors Theses
Lateral flow immunoassays (LFIs) are equipment-free tests that produce results quickly using small sample volumes. Colored lines appear as the test runs, indicating the presence of a biomarker. LFIs are ideal in a variety of settings. Development of these assays can be complicated for small team operations, and tests are not sufficiently adaptable for low resource settings. If robust point-of-care tests can be developed on site, they can expand the reach of global diagnostics, improving health around the world. We report a simple empowering LFI (seLFI) that only requires treated printer paper and a plastic backing card. This eliminates the …
La Habana: A History Of Society, Livelihood, Movement, And Land Use On The Iquitos-Nauta Highway, Katie Brown
La Habana: A History Of Society, Livelihood, Movement, And Land Use On The Iquitos-Nauta Highway, Katie Brown
Undergraduate Honors Theses
With increasing infrastructural projects and land titling in the Peruvian Amazon, many changes are occurring within small roadside communities. In this case study, we investigate how these changes impact livelihoods, land use, travel patterns, and social relations within the broader concepts of development, privatization of land, and commodification of nature. Specifically we focus on the caserío La Habana situated on the Iquitos-Nauta highway in the Loreto region of Peru. Semi-formal interviews and ethnographic methods were conducted to gather information on social organization, history of the community, land use practices, migration patterns, opinions on the road, and livelihood strategies. After data …
Sleep Modifications In A Drosophila Melanogaster Model Of Fragile X Syndrome, Morgan Mclaughlin
Sleep Modifications In A Drosophila Melanogaster Model Of Fragile X Syndrome, Morgan Mclaughlin
Undergraduate Honors Theses
Fragile X syndrome (FXS) is a neurodevelopmental disorder characterized by intellectual disabilities, disruptions in sleep, and autism in humans. Mutations in Fragile X Mental Retardation gene 1 (FMR1), which codes for a protein that modifies the expression of many target proteins, are primarily responsible for this disorder. Genetic modifications of FMR1 can increase or decrease the overall amount of sleep in humans. A potential pharmaceutical target of FXS is dopamine, a critical neurotransmitter in the regulation of sleep and wakefulness. In fruit flies (Drosophila melanogaster) dopamine has been shown to alter sleep. The mushroom body, a structure in …
D-Glucose-6-Phosphate Stimulates Sags-Dependent Biofilm Formation In Pseudomonas Aeruginosa, Madison Gowett
D-Glucose-6-Phosphate Stimulates Sags-Dependent Biofilm Formation In Pseudomonas Aeruginosa, Madison Gowett
Undergraduate Honors Theses
The SagS protein is a two-component regulatory system in Pseudomonas aeruginosa that works to independently regulate biofilm formation and antibiotic tolerance. Previous work found that these two pathways are controlled by two distinct sets of amino acids within the sensory domain of SagS that are thought to be potential ligand binding sites. Despite the extensive research done on the structure and function of SagS, the signals that activate this protein have yet to be identified. In this study we aimed to identify ligands that stimulate SagS-dependent biofilm formation. To do this we utilized ΔsagS mutants, one harboring wild-type sagS under …
Therapeutic Drug Monitoring Of Apixaban Using Chromogenic Kits, Brooke Vogel
Therapeutic Drug Monitoring Of Apixaban Using Chromogenic Kits, Brooke Vogel
Undergraduate Honors Theses
Apixaban is a novel oral anticoagulant that prevents clotting by directly inhibiting Factor Xa in the coagulation cascade. Due to its different pharmacokinetics, previous standards for testing anticoagulant concentrations are ineffective at measuring apixaban. In this study, Hyphen Biomed Biophen Direct Xa Inhibitor and Biophen Heparin chromogenic kits from Aniara Diagnostica were used along with a NanoDrop™ One/OneC Microvolume UV-Vis Spectrophotometer to see if either of these kits provide acceptable precision and accuracy for the quantification of apixaban in plasma samples, as well as if there is a significant difference in these two kits at varying concentrations of apixaban. …
Modeling Hybrid Novel Traits: A Case Study In Complex Petal Pigment Patterning In Hybrid Mimulus, Xingyu Zheng
Modeling Hybrid Novel Traits: A Case Study In Complex Petal Pigment Patterning In Hybrid Mimulus, Xingyu Zheng
Undergraduate Honors Theses
Hybridization between species, by introducing dramatic trait variation into the population and creating viable, transgressive offsprings with novel phenotypes, can have huge evolutionary implications. Some hybrid traits have been studied in the classical genetics or population genetics context, but most complex traits are determined by multiple causes, e.g. the number of loci involved, the rewiring of the genetic circuitries, and the changes in gene expression pattern. Using the hybrid monkeyflower petal pigment patterning as an example, we present a case study to investigate complex hybrid traits in a systematic manner that includes empirical data analysis and quantitative mathematical modeling of …
The Effects Of Caffeine On Jumping Performance And Maximal Strength In Female Collegiate Athletes, Benjamin Burke, Kyle Travis, Henry Lang, Jeremy Gentles, Kimitake Sato, Caleb Bazyler
The Effects Of Caffeine On Jumping Performance And Maximal Strength In Female Collegiate Athletes, Benjamin Burke, Kyle Travis, Henry Lang, Jeremy Gentles, Kimitake Sato, Caleb Bazyler
Undergraduate Honors Theses
Introduction: Caffeine has long been used to enhance athletic performance. The research regarding caffeine’s effects on strength and power performance is lacking, especially in female athletes. Purpose: To analyze the acute effects of caffeine on jumping performance and maximal strength in female collegiate athletes. Methods: Eight female collegiate athletes performed two testing sessions separated by one week. Using a double-blind approach, athletes randomly received 6 mg/kg of body mass of caffeine (CAF) or a placebo (PLA). Following 60min of quiet sitting and a standardized warm-up, athletes were tested on measures of squat jump height (SJH) and peak power (SJPP), countermovement …
The Role Of Dopamine In Decision Making Processes In Drosophila Melanogaster, Michelle C. Bowers
The Role Of Dopamine In Decision Making Processes In Drosophila Melanogaster, Michelle C. Bowers
Undergraduate Honors Theses
Understanding the neural processes that mediate decision making is a relatively new field of investigation in the scientific community. With the ultimate goal of understanding how humans decide between one path and another, simpler models such as Drosophila Melanogaster, the common fruit fly, are often utilized as a way of determining the neural circuits involved in these decision-making processes. One of the most important decisions flies make is the decision of where to lay their eggs (oviposit). Choosing the proper substrate upon which to lay eggs is a crucial decision that can ultimately impact their fecundity. This paper investigates the …
Modification, Verification Of Sequence And Optimization Of Expression Of P297f An Inactive Mutant Of Flavonol Specific Glucosyltransferase From Grapefruit (Cp3gt), Sarah Fox
Undergraduate Honors Theses
Citrus fruits are widely consumed and can offer various health benefits. One enzyme found in grapefruits, Citrus paradisi flavonol specific 3-O-glucosyltransferase (CP3GT), catalyzes the addition of glucose to one specific flavonoid class and at only one site. These flavonoids are plant secondary metabolites that can be used in a variety of plant functions including signaling and protection. The only class of flavonoids that CP3GT glucosylates is flavonols, and this specificity is of interest to study for potential benefits in biotechnology and enzyme modeling. In order to study this enzyme and its structure, a variety of mutants were created using site-directed …
Levels Of Parp1-Immunoreactivity In The Human Brain In Major Depressive Disorder, Aamir Shaikh
Levels Of Parp1-Immunoreactivity In The Human Brain In Major Depressive Disorder, Aamir Shaikh
Undergraduate Honors Theses
MDD is a severe and debilitating disorder that is associated with a growing global economic burden due to reduced workplace productivity along with increased healthcare resource utilization. Furthermore, depression markedly enhances the risk for suicide, mortality that is especially worrisome given that 30% of depressed individuals have an inadequate response to current antidepressants. This inadequacy of antidepressants necessitates the discovery of a better understanding of the pathobiology of MDD. Most current antidepressants work through monoamine neurotransmitters, and their relative efficacy in depression led to the now dated monoamine-deficiency hypothesis. The limited usefulness of antidepressants has led to a reinvigorated search …
The Effects Of Total Body Proton Irradiation On Mouse Myometrium, Lillith Bulawa
The Effects Of Total Body Proton Irradiation On Mouse Myometrium, Lillith Bulawa
Undergraduate Honors Theses
The boundaries of human space exploration continue to expand with new technology and discoveries making it even more important to investigate the effects of space on biological systems. Although humans have explored space in small increments, reproductive studies must be conducted to determine if stable short- or long-term residences for humans can exist in space. This study explored the effects of whole-body proton radiation on uterine smooth muscle known as the myometrium. Two types of mice utilized in this study were C57BL/6 and B6.129S6Cybbtm1Din/J NOX2 knockout mice. C57BL/6 mice are standard laboratory mice that were used to represent the wildtype …
The Effects Of Farnesol, A Quorum Sensing Molecule From Candida Albicans, On Alcaligenes Faecalis, Savannah Hutson
The Effects Of Farnesol, A Quorum Sensing Molecule From Candida Albicans, On Alcaligenes Faecalis, Savannah Hutson
Undergraduate Honors Theses
Quorum sensing molecules have become a recent focus of study to learn if and how they can be used, both on their own and in conjecture with current antimicrobial methods, as a means of bacterial control. One such quorum sensing molecule is the sesquiterpene alcohol, Farnesol, which is synthesized and released by the fungus, Candida albicans. In most in-vivo cases, our laboratory has shown that Alcaligenes faecalis overtakes C. albicans, preventing its growth. However, as a way to counteract this inhibitory effect, Farnesol may be one way that Candida has found to fight back. In this study, we …
A Study Of The Polymicrobial Inhibitory Interactions Between Alcaligenes Faecalis And Staphylococcus Aureus, Blakeley Griffin
A Study Of The Polymicrobial Inhibitory Interactions Between Alcaligenes Faecalis And Staphylococcus Aureus, Blakeley Griffin
Undergraduate Honors Theses
Members of the Staphylococcus genus are found as a part of normal microflora in humans and can commonly be found on the skin or in the nasal cavity. However, these microorganisms can cause serious and life-threatening opportunistic infections when there is a break in the physical barrier of skin. These infections have become difficult to treat as resistant strains emerge, particularly Methicillin Resistant Staphylococcus aureus (MRSA). MRSA has become a commonly acquired nosocomial infection which is difficult to treat with conventional antibiotics of the blactam class. Even Vancomycin, a last resort antibiotic, has been ineffective on some infections. Furthermore, …
Microbiome Diversity And Differential Abundances Associated With Bmi, Immune Markers, And Fecal Short Chain Fatty Acids Before And After Synbiotic Supplementation, John Sterrett, W Andrew Clark, Michelle Chandley
Microbiome Diversity And Differential Abundances Associated With Bmi, Immune Markers, And Fecal Short Chain Fatty Acids Before And After Synbiotic Supplementation, John Sterrett, W Andrew Clark, Michelle Chandley
Undergraduate Honors Theses
The gut microbiota and its metabolites – namely short chain fatty acids (SCFAs) – interact with the digestive, immune, and nervous systems. Microbiota with disrupted composition are highly associated with obesity, gastrointestinal symptoms, and chronic inflammation. Levels of SCFAs in the feces can represent dynamics of the microbiota, and they represent one mechanism by which the microbiota interacts with its host. This study aimed to further our understanding of associations between microbiota bacterial diversity and SCFAs, immune markers, BMI, and GI symptoms and to identify bacteria that are differentially abundant in different BMI groups and with synbiotic supplementation. Data (SCFAs, …
The Effectiveness Of A Fitness Mentoring Program On Life Skills In At-Risk Youth, Delaney Dunlap
The Effectiveness Of A Fitness Mentoring Program On Life Skills In At-Risk Youth, Delaney Dunlap
Undergraduate Honors Theses
BACKGROUND: The Aspire program is an eight-week program for troubled youths around the Canberra, Australia community that is run by former Canberran of the year and Canberra Raiders Captain Alan Tongue. The program aims to build self-esteem, develop social skills, help teach the effects actions have on others, understand how practice and hard work provide support, give purpose in life, and teach other practical, lifelong skills. During the program, Alan uses a combination of various activities including fitness, teamwork, discussion, writing, and self-reflection to help youth see their potential. PURPOSE: The purpose of this study was to examine the lasting …
Investigating The Behavioral Response Of Lampsilis Ovata To Various Salinity Conditions, Victoria Good
Investigating The Behavioral Response Of Lampsilis Ovata To Various Salinity Conditions, Victoria Good
Undergraduate Honors Theses
The Pocket-book mussel, Lampsilis ovata, is a native freshwater bivalve species that is endemic to North America. The salinity tolerance of this species is of interest because anthropogenic salinization events and climate change factors threaten their natural freshwater habitats. Furthermore, the invasive freshwater bivalve species Corbicula fluminea has been shown to display significant salinity tolerance, which may lead to negative competitive interactions with native freshwater bivalve species if the salinization of freshwater habitats exceeds thresholds beyond which native species can effectively cope. It was hypothesized that L. ovata would be sensitive to salinity conditions above 1 g/L and respond …
Effects Of Nicotinamide Riboside And Beta-Hydroxybutyrate On C. Elegans Lifespan, Jeffery Peters
Effects Of Nicotinamide Riboside And Beta-Hydroxybutyrate On C. Elegans Lifespan, Jeffery Peters
Undergraduate Honors Theses
The nicotinamide riboside (NR) form of vitamin B3and the ketone body ß-hydroxybutyrate (BHB) are two of the most promising natural compounds yet identified for the treatment of aging and aging-related diseases. Forms of vitamin B3are precursors for the synthesis of the coenzymes nicotinamide adenine dinucleotide (NAD(H)) and nicotinamide adenine dinucleotide phosphate (NADP(H)). In aged cells levels of NAD+decline, decreasing metabolism and decreasing activity of protective sirtuin protein deacetylases. In aged cells NR, but not more common forms of vitamin B3, boost NAD+levels. BHB is naturally produced by the body when individuals fast …
Second Messenger Cyclic-Di-Gmp Regulation In Acinetobacter Baumannii, Justin Deal
Second Messenger Cyclic-Di-Gmp Regulation In Acinetobacter Baumannii, Justin Deal
Undergraduate Honors Theses
Over time, “superbugs,” or bacteria that have become resistant to antibiotics, have become a great concern in modern medicine. Viable alternates are currently being looked into as effective and safe ways to prevent or treat infections caused by these superbugs. One such method is through the utilization of the second messenger molecule cyclic-di-GMP (c-di-GMP) that has been shown to regulate phenotypes within other bacteria that may control surface colonization in Acinetobacter baumannii. Through a series of experiments, the active enzymes that create c-di-GMP - diguanylate cyclases - and break down c-di- GMP - phosphodiesterases - have been inactivated in …
Temporal Factors Affecting Foraging Patterns Of A Diurnal Orb-Weaving Spider, Micrathena Gracilis (Araneae: Araneidae), Mitchell Davis Long
Temporal Factors Affecting Foraging Patterns Of A Diurnal Orb-Weaving Spider, Micrathena Gracilis (Araneae: Araneidae), Mitchell Davis Long
Undergraduate Honors Theses
Several studies have investigated the ecological factors that affect behavior in Micrathena gracilis, a diurnal orb-weaving spider that forages on flying insects during the day. However, none yet have considered how the temporal distributions of prey and predator occurrences shape their daily behavioral rhythms, especially web construction, which involves a heavy energetic investment well in advance of potential nutritional benefit. Recently, several orb-weaving spider species have been shown to exhibit a variety of abnormal rhythms, suggesting that circadian clock-controlled rhythms may play an unexpected role in behavioral evolution. Despite the appearance of significant insect abundance in the evenings, M. gracilis …
Ctrp3 And Alcoholic Liver Disease In Female Mice, Callie Root
Ctrp3 And Alcoholic Liver Disease In Female Mice, Callie Root
Undergraduate Honors Theses
C1q TNF Related Protein 3 (CTRP3), is a cytokine that is primarily secreted from adipose tissue, which classifies it as an adipokine. Our previous research has shown that CTRP3 prevents alcoholic fatty liver disease (ALD) in male mice. However, even when accounting for confounding factors such as absolute and relative alcohol intake, females are more sensitive to the effects of consumption compared to male mice. Therefore, the goal of this project was to determine whether CTRP3 prevented ALD in female mice. Methods: Female wild type (WT) and female CTRP3 transgenic over expressing (Tg) mice were fed an ethanol containing liquid …
Gut Pathophysiology In Mouse Models Of Social Behavior Deficits, Kyla Scott
Gut Pathophysiology In Mouse Models Of Social Behavior Deficits, Kyla Scott
Undergraduate Honors Theses
Autism spectrum disorders (ASD) encompass neurodevelopment disorders characterized by atypical patterns of development that impact multiple areas of functioning beginning in early childhood. The etiology of ASD is unknown and there are currently no preventative treatment options. Gastrointestinal symptoms are commonly associated comorbidities. The microbiota-gut-brain axis is a multidirectional communication chain that connects the central and enteric nervous system that relates brain function to peripheral intestinal functions. Changes within this axis have been postulated in ASD. For example, the “leaky gut theory” proposes that chronic inflammation is linked to alterations in the bacterial profiles of the gut microbiome and subsequent …
Characterization Of The Broad-Spectrum Inhibitory Capability Of Alcaligenes Faecalis And A. Viscolactis Against Potential Pathogenic Microorganisms, Andrew Fuqua
Undergraduate Honors Theses
The recent rise of multidrug resistant microorganisms has grown from an isolated concern to a massive public health crisis. It has become imperative that scientists look for new ways to combat this issue. Due to the selective pressures of competition, bacteria and other microbes possess a host of defenses and weapons designed to exploit vulnerabilities in other microorganisms. Consequently, the study of these systems and microbial interactions has much to reveal in the search for novel antimicrobial treatments. Previous research from our laboratory has discovered that both Alcaligenes faecalis and Alcaligenes viscolactis, two rarely studied and generally non-virulent bacteria, …
Synergistic Inhibition Of Resistant Enterobacteriaceae Using A Possible Klebsiella Secreted Bacteriocin With Broad-Spectrum Antibiotic, Andrew Robbins
Synergistic Inhibition Of Resistant Enterobacteriaceae Using A Possible Klebsiella Secreted Bacteriocin With Broad-Spectrum Antibiotic, Andrew Robbins
Undergraduate Honors Theses
Due to the increasing prevalence of multi-drug resistant (MDR) bacteria, it is now important to begin the search for novel means of defending against such resistant infections. Enterobacteriaceae is a clinically relevant family of bacteria that has shown extensive resistance to many antibiotics, especially after biofilm formation. Inhibitory poly-microbial interactions within this family have been observed. It is known that Citrobacter freundii (CF) growth is significantly inhibited by Klebsiella pneumoniae (KP) through a secreted protein. In this study, the potential KP bacteriocin was screened for its inhibitory effects on CF at various phases of biofilm development. The suspected KP bacteriocin …