Digital Commons Network^™

Reaction Of Zinc Proteome With Biologically Important Metal Binding Ligands, Kaniz Fatema

Theses and Dissertations

Fluorescent sensors have been widely used as microscopic tools to image Zn2+ on a cellular level. Recently, it has been established that the sensors TSQ and Zinquin form adducts with Zn-proteins and image fractions of the Zn-proteome.1 Since TSQ and Zinquin bind specifically to many Zn-proteins, it is hypothesized that other metal binding ligands, both synthetic and natural, may also bind to the Zn-proteome. Biologically active 1,10-phenanthroline (Phen) and related molecules were investigated for their ability to bind to Zn-proteome. Similarly, the cellular tripeptide, glutathione was investigated. It was observed that Phen and some other metal binding, bidentate ligands, were …

Arylboronates As H2o2 Or Photo-Inducible Dna Cross-Linking Agents: Design, Synthesis, Mechanism, And Anticancer Activity, Yibin Wang

Theses and Dissertations

Interest in the development of cancer therapies with improved selectivity and reduced host toxicity has been growing. In this thesis, we designed and synthesized a series of novel non-toxic arylboronic ester and biarylboronic ester derivatives that can be activated by hydrogen peroxide (H2O2) to induce DNA interstrand cross-link formation. The mechanism of DNA cross-linking induced by these arylboronates involves generation of phenol intermediates 1 followed by departure of leaving group (L) leading to quinone methides (QMs) 2, which directly cross-link DNA via alkylation. The QM formation is the rate-determining step for DNA cross-linking. The activity and selectivity of these compounds …

Transport Mechanisms For Human Fecal Indicator Bacteria In An Urban Stormwater Basin In Southeastern Wisconsin, Chelsea M. Corson

Theses and Dissertations

Discharge of stormwater runoff to receiving waters is a known source of human pathogens; however the primary mechanisms by which these pathogens enter the stormwater system have yet to be quantified. This study builds upon and utilizes prior research findings in an attempt to explain the influence of the age of the pipes within stormwater and sanitary conveyance systems, rainfall and hydrogeological characteristics, and select infrastructure variables that contribute to the observed contamination of an urban stormwater basin in Southeastern Wisconsin.

Over the course of approximately two years from 2012 to 2014, a total of 260 samples from 22 stormwater …

The Mixing Of A River Into Coastal Waters At Two Beaches: Environmental Factors, E. Coli Contributions And Applications For Predictive Models, Adrian Jordan Koski

Theses and Dissertations

Beach closures and public health protection are confounded by analytical procedures that result in delays in notification of adverse water quality conditions and the lack of affordable analytical methods to identify pollutant sources. Attempts have been made to develop predictive frameworks using ancillary hydrometeorological data to statistically anticipate deteriorated water quality. Many urban coastal beaches are impacted by river runoff. In Kenosha Wisconsin, beach sanitary survey data from two beaches adjacent to the mouth of the Pike River were examined to ascertain whether simple river-lake mixing models identified river influence on coastal water quality and improved predictions of beach advisories. …

Functionally Distinct Pools Of Calcineurin Contribute To Depotentiation-Like Synaptic Changes In The Lateral Amygdala During Auditory Fear Extinction, Elena Kay Rotondo

Theses and Dissertations

Until recently, auditory fear extinction was not thought to modify substrates involved in the storage of the original auditory fear memory. Evidence now suggests that extinction results in the reversal of the fear conditioning-induced potentiation of thalamic inputs to the lateral amygdala. However, little is known about the molecular mechanisms that support this depotentiation of synaptic strength. Here we present behavioral and molecular evidence in support of the contribution of two distinct pools of the protein phosphatase calcineurin to depotentiation-like changes in lateral amygdala AMPA receptor trafficking during auditory fear extinction. Calcineurin protein that exists prior to the onset of …

Iodine-131: Measurement And Application Of A Novel Tracer In Lake Michigan, Michael Patrick Montenero

Theses and Dissertations

Iodine-131 is a short-lived (half-life=8.0233 days), gamma emitting, radiopharmaceutical that, when excreted by patients, enters aquatic systems via sewage effluent discharged from water reclamation facilities (WRFs). Here, I report on 131I activities in the nearshore of southwest Lake Michigan in the vicinity of Milwaukee, Wisconsin. This is the first report on 131I activity in any of the Great Lakes of North America.

The flux of 131I from Milwaukee’s two WRFs was monitored from July 2013 to December 2014. Mean discharge of 131I from the Jones Island WRF was (0.664 ± 0.012)×108 Bq d-1 (mean effluent 131I activity: ~0.25 Bq L-1; …

The Identification And Quantification Of Sewage Contamination In The Milwaukee Estuary, Hayley Templar

Theses and Dissertations

Sewage contamination from failing infrastructure and sewer overflows is a major environmental and human health concern in waterways, especially in urban communities bordering the Great Lakes such as Milwaukee, Wisconsin. Culture-based fecal indicator bacteria, such as Escherichia coli, enterococci, and fecal coliforms are traditionally used to indicate the presence of a human health risk due to fecal contamination. These indicators, however, fail to distinguish between sources of fecal contamination (human vs. non-human). Two human-specific fecal indicators, human Bacteroides and human Lachnospiraceae, were used to identify and quantify sewage contamination in the Milwaukee estuary, which discharges to Lake Michigan, as well …

Upper Extremity Kinematic And Kinetic Comparison Of Anterior Versus Posterior Walkers During Functional Activities In Children With Cerebral Palsy, Chris Burckardt

Theses and Dissertations

Introduction: Investigating the differences in upper extremity (UE) joint biomechanics between anterior and posterior walkers has been explored in limited contexts, even though research has shown that prolonged use of walking aids can lead to UE joint weakening or musculoskeletal injuries. Recent studies have investigated some of these differences in children with spastic diplegic cerebral palsy (CP) during gait; however, no research has been conducted that compare these UE joint biomechanical differences during functional activities or activities of daily living (ADLs). The aim of this study is to use motion analysis to compare kinematic and kinetic differences between anterior and …

Adaptation Of Moiré Phase Tracking To A Mobile Device For Field 3d Data Collections, Amar Nikhanj

Theses and Dissertations

The accelerating technologies of mobiles devices such as tablets and phones provide an ability to

perform high intensity calculations all while obtaining precise data with increasingly more accurate

sensors. Image metrology and 3D motion tracking can take advantage of these improvements as

they require both significant processing power and camera controls not seen in mobile devices until

very recently. This thesis discusses the development of 3D motion tracking using Google Nexus

tablets and applying the technology to the Rapid Upper Limb Assessment (RULA) to demonstrate

the technology’s application to field measurements. RULA analysis determines the stress placed on

a human …

Time-Resolved, Near Atomic Resolution Structural Studies At The Free Electron Laser, Jason James Tenboer

Theses and Dissertations

Time-resolved serial femtosecond crystallography (TR-SFX) employs X-ray free electron lasers (XFELs) to provide X-ray pulses of femtosecond (fs) duration with 1012 photons per pulse. These XFELs are more than a billion times more brilliant than 3rd generation synchrotron X-ray sources. For structure determination, protein crystals on the micrometer length scale (microcrystals) are injected into the X-ray beam and the resulting diffraction patterns are recorded on fast-readout pixel detectors. Although these intense pulses deposit enough energy to ultimately destroy the protein, the processes that lead to diffraction occur before the crystal is destroyed. This so-called diffraction-before-destruction principle overcomes radiation damage, which …

Porphyrin As A Spectroscopic Probe Of Net Electric Fields In Heme Proteins, Hannah Elizabeth Wagie

Theses and Dissertations

Heme proteins have diverse functions as well as varied structures but share the same organic, conjugated cofactor. Similarly varied approaches have been taken to deduce how heme can take on different roles based on its protein environment. A unique approach is to view the protein matrix as a constellation of point charges that generates a defined, reproducible, net internal electric field that has influence over the electronic properties of the heme cofactor. This work considers how porphyrins, the basic chromophore building block of heme, can be used as a native spectroscopic sensor of internal electric field at the active site …

Entheses And Activities: The Multivariate Mechanisms Of Entheseal Change For Individuals Represented By The 2013 Excavations Of The Milwaukee County Institution Grounds Cemetery, Jessica L. Skinner

Theses and Dissertations

ABSTRACT

ENTHESES AND ACTIVITIES: THE MULTIVARIATE MECHANISMS OF ENTHESEAL CHANGE FOR INDIVIDUALS REPRESENTED BY THE 2013 EXCAVATIONS OF THE MILWAUKEE COUNTY INSTITUTION GROUNDS CEMETERY

by

Jessica L. Skinner

The University of Wisconsin-Milwaukee, 2015

Under the Supervision of Professor Fred Anapol

The analysis of the features that mark tendon and muscle insertion sites on bone has been used in an attempt to reconstruct past life activity patterns of individuals and populations represented by skeletal remains. Many of these analyses have focused on comparing evidence from these individuals with known musculoskeletal and biomechanical data. Recent experimental tests have illustrated that defining these …

Theoretical Investigation Of Interactions And Relaxation In Biological Macromolecules, Koki Yokoi

Theses and Dissertations

One of the major challenges posed to our quantitative understanding of structure, dynamics, and function of biological macromolecules has been the high level of complexity of biological structures. In the present work, we studied interactions between G protein-coupled receptors (GPCRs), and also introduced a theoretical model of relaxation in complex systems, in order to help understand interactions and relaxation in biological macromolecules.

GPCRs are the largest and most diverse family of membrane receptors that play key roles in mediating signal transduction between outside and inside of a cell. Oligomerization of GPCRs and its possible role in function and signaling currently …

Neural Mechanisms Supporting Differential Auditory Fear Conditioning, Nicole Christine Ferrara

Theses and Dissertations

Pavlovian fear conditioning provides an ideal way to study memory formation, retention, and updating. Plasticity in the auditory thalamus is required during the acquisition and consolidation of a fear memory when a tone signals a foot shock. The medial geniculate nucleus (MgN) of the auditory thalamus sends projections to the amygdala and auditory cortex and is functionally divided into two different regions, the medial division (MGm) and the ventral division (MGv). Traditionally, these divisions are thought to relay auditory information to the amygdala during fear-related associative learning. However, recent research has suggested a more complex role for the MgN when …

The Development Of The Single-Leg Landing Error Scoring System (Sl-Less) For Lower Extremity Movement Screening, Maegan L. O'Connor

Theses and Dissertations

Introduction: Musculoskeletal knee injuries are some of the most common sports-related injuries. Movement screening assessments are often implemented to identify high-risk individuals in order to prevent the injury and the negative long-term consequences related to sustaining these injuries. While there are numerous established field-based assessments none have shown a strong ability to predict future injury. Additionally, there is currently there is no two-dimensional (2D) screening measure to evaluate the movement of multiple body segments in more than one plane during a single-leg task. The purpose of this study was to investigate the validity and reliability of the Single-Leg Landing Error …

Effects Of Global Dna Methylation Changes On Neurobehavior In Zebrafish, Matthew Christopher Pickens

Theses and Dissertations

A number of environmental neurotoxicants modulate DNA methylation, but its influence on neurobehavior remains unclear. The laboratory has established that low-level developmental methylmercury exposure induces neurobehavioral deficits; the current results demonstrate that it also induces global DNA hypomethylation. DNA methyltransferase 1-mutant zebrafish (exhibit ~70% reduction in enzymatic activity) were used to assess the role of DNA hypomethylation on behavior. Several neurobehavioral assays including the C-start escape, circadian rhythm, basic locomotion and visual-motor response (VMR) were also performed. There was a significant difference in VMR between the wild type and mutant animals. Other behavior assays revealed no significant difference, primarily due …

The Lived Experiences Of An Injured Athlete And Members Of A Performance Management Team During Injury Rehabilitation: An Interpretative Phenomenological Analysis, Courtney Wynne Hess

Theses and Dissertations

In response to an ever growing understanding of the biopsychosocial nature of health and well-being, multidisciplinary and interdisciplinary approaches to rehabilitation have grown in acceptance over the past decade. Studies that have explored the effect of these two approaches have found them to be effective in improving rehabilitation outcomes (McAlister et al., 2001; Tur et al., 2003). Although they have been shown to be objectively effective, the impact that these approaches have on the lived experiences of the team employing them, and the athlete or patient they serve, is not well understood. As such, the purpose of the current study …

Contribution Of Lianas To Plant Area Index And Canopy Structure In A Panamanian Forest, Maria Elizabeth Rodriguez-Ronderos

Theses and Dissertations

Lianas are an important component of tropical forests, where they reduce tree growth, fecundity and survival. Competition for light among plants may be intense; however the amount of light that lianas intercept is poorly understood. We used a large-scale liana removal experiment to quantify light interception by lianas in a Panamanian secondary forest. We measured the change in plant area index (PAI) and forest structure six weeks after cutting lianas in eight 80x80 m plots and in eight control plots, and then annually for four years. We used ground-based LiDAR to measure the 3-dimensional canopy structure before cutting lianas and …

Neurobehavioral And Gene Expression Effects Of Early Embryonic Methylmercury Exposure In Yellow Perch (Perca Flavescens) And Zebrafish (Danio Rerio) Larvae, Francisco Xavier Mora Zamorano

Theses and Dissertations

Methylmercury (MeHg) is a pervasive and persistent neurotoxic environmental pollutant known to affect the behavior of fish, birds and mammals. The present study addresses the neurobehavioral and gene expression effects of MeHg in yellow perch (Perca flavescens) and zebrafish (Danio rerio) embryos. The rationale for this study originated from an interest to understand the behavioral and molecular phenotypes of environmental MeHg exposure in the yellow perch, an ecologically and economically relevant species of the North American Great Lakes region. Both MeHg and the yellow perch coexist in a common ecosystem: the North American Great Lakes. However, the effects of this …

A Tale Of Two Morphs: Genetic And Genotypic Structure Between Macrocystis Pyrifera And Macrocystis Integrifolia, Heidi Hargarten

Theses and Dissertations

Organisms living along environmental gradients often utilize phenotypic plasticity to maximize their survival across a range of conditions. Wherever gradients occur, there is potential for divergence through isolation-by-adaptation (IBA) to build-up between genotypes experiencing different selective pressures. Plasticity in traits pertaining to mating systems in particular are likely to constitute an interesting and revealing model for the study of the underlying mechanisms behind parapatric speciation. Giant kelp, Macrocystis spp., shows striking plasticity in holdfast morphology and reproductive strategy when colonizing intertidal (M. integrifolia morph) versus subtidal (M. pyrifera morph) areas along temperate rocky coastlines of the eastern Pacific Ocean. In …

Classification Of Adequate Impact Protection For Hands, Patrick Dylan Loshek

Theses and Dissertations

ABSTRACT

CLASSIFICATION OF ADEQUATE

IMPACT PROTECTION FOR HANDS

by

Patrick D. Loshek

The University of Wisconsin-Milwaukee, 2015

Under the Supervision of Professor Naira Campbell-Kyureghyan

Historically, hand injuries have been a large burden for the manufacturing, construction, mining, oil and gas industries. Specially designed gloves are commonly used in industry today to protect hands from impacts. These gloves are designed to reduce hand injuries by absorbing the impact forces workers may encounter due to objects striking the hand. However, to date, there is no standard for the testing of these gloves and quantifying the force reduction a user would experience when …

The Effects Of 830nm Light On Inflammation In Retinitis Pigmentosa, Krystal Marie Bach

Theses and Dissertations

Purpose: Retinitis Pigmentosa (RP) is an inherited retinal degenerative disease and the most common cause of blindness in developed countries, affecting approximately 1 in 4,000 people. RP is characterized by photoreceptor cell death and recent studies suggest that chronic inflammation may play a key role in the pathogenesis of RP. Currently, there are no known treatments or preventive measures to delay or halt the loss of photoreceptor cells. Photobiomodulation (PBM) by light in the far-red or near-infrared (NIR) range of the light spectrum has been documented to help promote cell survival and reduce inflammation in several disease states. Recent studies …

Antioxidant Function Of Pigment Epithelium Derived Factor In Adipose Tissue, The Prostate, And Prostate Cancer, Lyndsey Sandra Crump

Theses and Dissertations

Aggressive prostate cancer (PCa) is positively correlated with obesity and a high fat diet, suggesting that dysregulated lipid metabolism promotes PCa progression. Pigment epithelium-derived factor (PEDF) regulates angiogenesis, lipid metabolism, and has antioxidant function in other cell types. In the prostate, PEDF inhibits angiogenesis, and its expression is decreased in PCa. However, PEDF’s role in regulating lipid metabolism and oxidative stress levels has not been investigated, and, as such, was the goal of the present study. Oxidative stress levels were evaluated in vivo and ex vivo in prostate and adipose tissues from wildtype (C56Bl/6J) and PEDF knockout (KO) mice. In …

Functional Diversity Of Regional Marine Paleocommunities After The Permo-Triassic Mass Extinction: Case Studies From Panthalassa And Paleo-Tethys, Ashley Ann Dineen

Theses and Dissertations

The Permo-Triassic mass extinction (PTME) was the largest biodiversity collapse in Earth’s history. Published data has been interpreted as indicating that marine ecological devastation following the PTME was protracted and may have lasted 5 million years into the Middle Triassic (Anisian). However, a review of previous literature shows that understanding of biotic recovery is usually based on only a few components of the ecosystem, such as on taxonomic diversity, a single genus/phylum, or shallow water facies. Typically, paleocommunities are considered fully recovered when dominance and diversity are regained and normal ecosystem functioning has resumed. However, to more fully characterize Triassic …

Three Essays On Enhancing Clinical Trial Subject Recruitment Using Natural Language Processing And Text Mining, Euisung Jung

Theses and Dissertations

Patient recruitment and enrollment are critical factors for a successful clinical trial; however, recruitment tends to be the most common problem in most clinical trials. The success of a clinical trial depends on efficiently recruiting suitable patients to conduct the trial. Every clinical trial research has a protocol, which describes what will be done in the study and how it will be conducted. Also, the protocol ensures the safety of the trial subjects and the integrity of the data collected. The eligibility criteria section of clinical trial protocols is important because it specifies the necessary conditions that participants have to …

Relationship Between Learning-Related Synaptic And Intrinsic Plasticity Within Lateral Amygdala, Megha Sehgal

Theses and Dissertations

A central question in neuroscience is to determine the mechanisms that govern formation, storage and modulation of memories. Determining these mechanisms would allow us to facilitate new memory formation as in the case of aging-related cognitive decline or weaken preexisting pathological memories such as traumatic memories and cue-induced drug craving. Pharmacological and genetic manipulation of intrinsic neuronal excitability has been demonstrated to impact the strength of memory formation, allocation of memories, and modulation of memories through retrieval and reconsolidation-dependent processes. In addition to experimental manipulations of intrinsic excitability, intrinsic plasticity, a change in neuronal intrinsic excitability, can be brought about …

Individual, Occupational And Biomechanical Factors That Affect Slip And Fall Risk From Fixed Ladders, Erika Mae Pliner

Theses and Dissertations

Injuries from ladder falls are prevalent and severe. Previous research has examined certain elements of ladder falls such as the ladder base slipping, but few studies have examined the factors that contribute to climbers falling from the ladder, particularly for permanent/fixed ladders. In addition, the biomechanical response to a ladder slip/misstep during ladder climbing and the factors that affect a fall from a ladder are not well understood. This thesis is a two part study that simulated ladder slips and missteps in order to find factors 1) associated with ladder slip risk and 2) that decrease fall severity from a …

Mechanistic Study Of Heme Protein-Mediated Nitric Oxide Dioxygenation Using Photolytically Produced Nitric Oxide, Karl Joseph Koebke

Theses and Dissertations

The previously reported NO precursor [Mn(PaPy2Q)(NO)]ClO4 (1), where (PaPy2QH) is N,N-bis(2-pyridylmethyl)-amine-N-ethyl-2-quinoline-2-carboxamide, was synthesized and proven capable of producing as much as 180 µM NO when irradiated by a single 3 mJ 500nm laser pulse, in a 0.15 cm path cell, without the need for additional sacrificial reductants or oxidants. Species 1 was first used to study the reaction of nitric oxide with oxy-myoglobin (oxyMb) to form ferric myoglobin (metMb) and nitrate. This reaction had long been assumed to proceed via the same iron-bound peroxynitrite intermediate (metMb(OONO)) as the metMb-catalyzed isomerization of peroxynitrite to nitrate. Recent research showed that the metMb-catalyzed …

The Role Of Sulfur Metabolism In Effective Plant-Microbe Interactions, Justin Joseph Speck

Theses and Dissertations

Bradyrhizobium japonicum USDA110 and Sinorhizobium meliloti RM1021 are nitrogen fixing rhizobia that fix nitrogen when in a symbiotic relationship with legumes. For effective nitrogen-fixing symbiosis to occur these rhizobia must differentiate into nitrogen-fixing bacteroids. This involves the production of high levels of sulfur rich nitrogenase as well as other sulfur containing compounds, creating a large demand for sulfur. This work examined the role of organic sulfur in the establishment of symbiosis and viability of rhizobia in plant nodules.

Disruption of the sulfonate sulfur utilization gene ssuD in both Bradyrhizobium japonicum USDA110 and Sinorhizobium meliloti RM1021 resulted in a strong nitrogen …

Regulation Of Mtor And Erk Signaling In The Amygdala Through Proteolytic Modulation Of Pp2a Activity Following Auditory Fear Learning, David Sylvan Reis

Theses and Dissertations

The consolidation of fear memories is known to depend on a number of critical cellular processes including de novo protein synthesis and 26S proteasome-dependent protein degradation following auditory fear conditioning (Jarome et al., 2011; Kwapis et al., 2011). Early work has suggested that protein degradation, mediated by the ubiquitin proteasome system (UPS), may regulate the requirement for de novo protein synthesis during memory consolidation (Jarome & Helmstetter, 2014). However, the precise way in which the UPS is able to regulate mechanisms of protein synthesis remain unclear. In the present set of experiments, we investigated the role of the protein phosphatase …