Digital Commons Network^™

Filtering Efficiency And Feeding Mechanisms Of Daphnia Pulex On Microcystis Aeruginosa And Nannochloropsis, Elizabeth Orlowicz

Honors Theses and Capstones

The filtering and feeding rate of Daphnia pulex from the Old Durham Reservoir, Durham, NH, were measured to determine the feeding efficiency on different concentrations of non-toxic Nannochloropsis (Class Eustigmatophyceae) and toxigenic cyanobacteria Microcystis aeruginosa. Direct observations of thoracic appendage beats and post-abdominal rejections were also measured at 5*10⁵ and 10⁶ cells mL^-1 concentrations of Nannochloropsis and M. aeruginosa to examine the feeding mechanisms of the D. pulex. In the presence of increasing Nannochloropsis concentrations, the filtering rates decreased and the feeding rates increased. When exposed to M. aeruginosa, both the filtering and feeding …

Restoring Oyster Reefs In Great Bay Estuary, Nh 2012 Annual Program Report, Ray Konisky, Raymond E. Grizzle, Krystin M. Ward, Kara Mcketon

PREP Reports & Publications

The eastern oyster (Crassostrea virginica) in New Hampshire’s Great Bay Estuary has declined in the past decades, with local populations reduced due primarily to disease, excessive siltation, and past over-harvest. The loss of filtering oysters results in diminished ecological benefits for water quality, nitrogen control, and other services that healthy oyster populations provide. In support of management objectives to restore oyster populations, The Nature Conservancy (TNC) and the University of New Hampshire (UNH) have combined for a fourth consecutive year of scaled-up methods to rebuild reefs and oyster populations. Since 2009, we have “planted” dried shell, primarily surf-clam …

Final Environmental Data Report December 2012: Technical Support Document For The 2013 State Of Our Estuaries Report, Piscataqua Region Estuaries Partnership

PREP Reports & Publications

The Piscataqua Region Estuaries Partnership (PREP) is part of the U.S. Environmental Protection Agency’s National Estuary Program, which is a joint local/state/federal program established under the Clean Water Act with the goal of protecting and enhancing nationally significant estuarine resources. PREP is funded by the EPA and is administered by the University of New Hampshire.

The following sections contain the most recent data for the indicators currently tracked by PREP.

Estrous Cycle-Dependent Changes Of Fas Expression In The Bovine Corpus Luteum: Influence Of Keratin 8/18 Intermediate Filaments And Cytokines, Alice Duncan, Jennifer Forcina, Alyssa Birt, David H. Townson

Molecular, Cellular & Biomedical Sciences

Background

Fas expression and Fas-induced apoptosis are mechanisms attributed to the selective destruction of cells of the corpus luteum (CL) during luteal regression. In certain cell-types, sensitivity to these death-inducing mechanisms is due to the loss or cleavage of keratin-containing intermediate filaments. Specifically, keratin 8/18 (K8/K18) filaments are hypothesized to influence cell death in part by regulating Fas expression at the cell surface.

Methods

Here, Fas expression on bovine luteal cells was quantified by flow cytometry during the early (Day 5, postovulation) and late stages (Days 16–18, postovulation) of CL function, and the relationship between Fas expression, K8/K18 filament expression …

The Consequences Of Denoising Marker-Based Metagenomic Data, John M. Gaspar, W. K. Thomas

Molecular, Cellular & Biomedical Sciences

No abstract provided.

The Role Of Landscape Connectivity In Planning And Implementing Conservation And Restoration Priorities. Issues In Ecology, Doborah Rudnick, Sadie J. Ryan, Paul Beier, Samual A. Cushman, Fred Dieffenbach, Clinton Epps, Leah R. Gerber, Joel N. Hartter, Jeff S. Jenness, Julia Kintsch, Adina M. Merenlender, Ryan M. Perkl, Damian V. Perziosi, Stephen C. Trombulack

Geography

Landscape connectivity, the extent to which a landscape facilitates the movements of organisms and their genes, faces critical threats from both fragmentation and habitat loss. Many conservation efforts focus on protecting and enhancing connectivity to offset the impacts of habitat loss and fragmentation on biodiversity conservation, and to increase the resilience of reserve networks to potential threats associated with climate change. Loss of connectivity can reduce the size and quality of available habitat, impede and disrupt movement (including dispersal) to new habitats, and affect seasonal migration patterns. These changes can lead, in turn, to detrimental effects for populations and species, …

Effects Of Incremental Dietary Levels Of Ground Flaxseed On Milk Production, Ruminal Metabolism, And Enteric Methane Emissions In Organic Dairy Cows, Katie Velez

Honors Theses and Capstones

Ground Flaxseed (Linum uitatissimum) is a lipid supplement that is commonly fed to dairy cows. It is believed that supplemental lipid can change the Fatty Acid (FA) composition in the milk, and decrease methane production. Twenty lactating organic Jersey cows, housed at the UNH Organic Dairy Research Farm (ODRF), were randomly assigned to five replicated 4 × 4 Latin squares to investigate the effects of increasing dietary levels of ground flaxseed (0, 5, 10, or 15% of the diet dry matter) on animal fperformance (e.g., dry matter intake, milk production, milk composition), ruminal metabolism, and enteric methane emissions. Each …

The Quantitative Soil Pit Method For Measuring Belowground Carbon And Nitrogen Stocks, Matthew A. Vadeboncoeur, Steven P. Hamburg, Joel D. Blum, Michael J. Pennino, Ruth D. Yanai, Chris E. Johnson

Earth Systems Research Center

Many important questions in ecosystem science require estimates of stocks of soil C and nutrients. Quantitative soil pits provide direct measurements of total soil mass and elemental content in depth-based samples representative of large volumes, bypassing potential errors associated with independently measuring soil bulk density, rock volume, and elemental concentrations. The method also allows relatively unbiased sampling of other belowground C and nutrient stocks, including roots, coarse organic fragments, and rocks. We present a comprehensive methodology for sampling these pools with quantitative pits and assess their accuracy, precision, effort, and sampling intensity as compared to other methods. At 14 forested …

Minireview: Protein Interactions, Jessica Child

Honors Theses and Capstones

No abstract provided.

Biosecurity Risk Assessment Of The Fairchild Dairy Nutrition Research Center, Margaret Lynch

Honors Theses and Capstones

No abstract provided.

Variations In Carotenoids In Plasma From Jersey Cows At An Organic Dairy Compared To A Conventional Dairy Over Time, Jillian M. Smith

Honors Theses and Capstones

Interest in organic milk is increasing. By USDA Certified Organic standards, animals must be fed on pasture for a minimum of 120 days. Research indicates that various factors such as diet impact the nutritional quality and composition of milk. The objective of this study was to understand how feeding practices affected bovine plasma carotenoid concentrations over time. Plasma samples were collected from 9 cows fed on pasture at an organic dairy and from 9 cows fed total mixed ration (TMR) at a conventional dairy. Components were extracted from the plasma and separated via High Performance Liquid Chromatography. Results showed that …

One Can’T Stand On Its Own: Are Non-Luminescence Traits Necessary For V. Fischeri Colonization Of E. Scolopes?, Feier Liu

Honors Theses and Capstones

Vibrio fischeri and Euprymna scolopes squid establish mutualistic symbiosis and select for each other in the natural environment. V. fischeri provides bioluminescent camouflage for E. scolopes while E. scolopes provides nutrients for V. fischeri. The most intriguing aspect of this relationship is that E. scolopes is highly selective and only allows sustained colonization by luminous, but not dark V. fischeri. Luminescence is the key symbiosis trait; however, other bacterial factors may also allow squid recognition. We hypothesized that there are luminescence linked traits that contribute to colonization. V. fischeri with luminescence variation was isolated and tested for oxidative resistance, …

Eelgrass Distribution In The Great Bay Estuary For 2011, Frederick T. Short

PREP Reports & Publications

Eelgrass in the Great Bay Estuary declined in both distribution and biomass between 2010 and 2011. In 2011, eelgrass was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor and Little Bay. Eelgrass distribution in Great Bay itself decreased between 2010 and 2011 and experienced an alarming 26% loss of biomass in a single year. In Great Bay itself there has been a loss of 35% of eelgrass distribution since 1996. In 2011, despite recent consecutive excellent growing years in terms of weather, we saw a reverse of the trend of slight increases in …

Eelgrass Distribution In The Great Bay Estuary For 2010, Frederick T. Short

PREP Reports & Publications

The following is a revision of the 2010 eelgrass status report submitted to the Piscataqua Region Estuaries Partnership by Dr. Fred Short, correcting an error in eelgrass percent cover classification discovered by PREP staff during their QA/QC process. Eelgrass in the Great Bay Estuary in 2010 was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor. In 2010, Portsmouth Harbor experienced a 9% loss of eelgrass distribution since 2009, for a loss of 47% of the Harbor’s eelgrass distribution since 1996, an alarming trend. For the third year in a row in the Piscataqua …

Sequencing And Analysis Of The Gastrula Transcriptome Of The Brittle Star Ophiocoma Wendtii, Roy Vaughn, Nancy Garnhart, James R. Garey, W. Kelley Thomas, Brian T. Livingston

Hubbard Center for Genome Studies (HCGS)

Background

The gastrula stage represents the point in development at which the three primary germ layers diverge. At this point the gene regulatory networks that specify the germ layers are established and the genes that define the differentiated states of the tissues have begun to be activated. These networks have been well-characterized in sea urchins, but not in other echinoderms. Embryos of the brittle star Ophiocoma wendtii share a number of developmental features with sea urchin embryos, including the ingression of mesenchyme cells that give rise to an embryonic skeleton. Notable differences are that no micromeres are formed during cleavage …

Identification Of Ebs1, Lsm6 And Nup159 As Suppressors Of Spt10 Effects At Adh2 In Saccharomyces Cerevisiae Suggests Post-Transcriptional Defects Affect Mrna Synthesis, Bradley Anderson, Carrie Ann May, Clyde L. Denis

New Hampshire Agricultural Experiment Station Publications

Suppression of the effects of an spt10 mutation on ADH2 expression is a phenotype shared by a small number of genes whose protein products are either components of the CCR4-NOT complex required for mRNA deadenylation and degradation (CCR4, CAF1, NOT4) or have been shown to interact with the complex (DBF2, SRB9, SRB10). In this work, we conducted a screen for additional suppressors of spt10 at ADH2 to identify new factors related to CCR4 function. In addition to reisolating ccr4 and caf1 alleles, three previously unidentified suppressors …

Shellfish Tissue Monitoring In Piscataqua Region Estuaries 2010 And 2011, New Hampshire Department Of Environmental Services, Matthew A. Wood, Philip R. Trowbridge

PREP Reports & Publications

The goal of this project was to provide data for two PREP indicators of estuarine condition: TOX1 and TOX3. These two indicators report on “Shellfish tissue concentrations relative to FDA standards” and “Trends in shellfish tissue contaminant concentrations”, respectively. Both of these indicators depend on data from the Gulfwatch Program. In particular, TOX3 requires annual data at benchmark sites to assess trends. In 2010 and 2011, PREP supported the collection and analysis of tissue samples from benchmark mussel sites in Hampton-Seabrook Harbor and Dover Point.

Climate Ready Estuaries - Coast In Action: 2012 Projects From Maine And New Hampshire, S. Merrill, P. Kirshen, D. Yakovleff, S. Lloyd, C. Keeley, B. Hill

PREP Reports & Publications

In summer 2011 the US EPA’s Climate Ready Estuaries program awarded funds to the Casco Bay Estuary Partnership (CBEP) in Portland, Maine, and the Piscataqua Region Estuaries Partnership (PREP) in coastal New Hampshire, to further develop and use COAST (COastal Adaptation to Sea level rise Tool) in their sea level rise adaptation planning processes. The New England Environmental Finance Center worked with municipal staff, elected officials, and other stakeholders to select specific locations, vulnerable assets, and adaptation actions to model using COAST. The EFC then collected the appropriate base data layers, ran the COAST simulations, and provided visual, numeric, and …

The Effects Of Cytokinin On The Transcriptional Regulation Of Pin Expression In Arabidopsis Thaliana, Elizabeth Burgess

Honors Theses and Capstones

The processes of cell division and differentiation are critical to the development of any multicellular organism. During the formation of plant roots these processes take place at a region of the root tip called the meristem. Cytokinin and auxin are two plant growth hormones that influence this process. Although these two growth hormones are both necessary they also appear in many ways to have an antagonistic relationship. As meristematic root cells undergo differentiation they cease dividing. It has been proposed that the size of the root meristem and thus the overall rate of root growth are determined by the balance …

Dramatic Shifts In Benthic Microbial Eukaryote Communities Following The Deepwater Horizon Oil Spill, Holly M. Bik, Kenneth M. Halanych, Jyotsna Sharma, W. Kelley Thomas

Hubbard Center for Genome Studies (HCGS)

Benthic habitats harbour a significant (yet unexplored) diversity of microscopic eukaryote taxa, including metazoan phyla, protists, algae and fungi. These groups are thought to underpin ecosystem functioning across diverse marine environments. Coastal marine habitats in the Gulf of Mexico experienced visible, heavy impacts following the Deepwater Horizon oil spill in 2010, yet our scant knowledge of prior eukaryotic biodiversity has precluded a thorough assessment of this disturbance. Using a marker gene and morphological approach, we present an intensive evaluation of microbial eukaryote communities prior to and following oiling around heavily impacted shorelines. Our results show significant changes in community structure, …

Nitrogen, Phosphorus, And Suspended Solids Concentrations In Tributaries To The Great Bay Estuary Watershed In 2011, New Hampshire Department Of Environmental Services, Matthew A. Wood, Philip Trowbridge

PREP Reports & Publications

Nitrogen, phosphorus, and sediment loads to the Great Bay Estuary are a growing concern. The Piscataqua Region Estuaries Partnership (PREP) calculates the nitrogen load from tributaries to the Great Bay Estuary for its State of the Estuaries reports. Therefore, the purpose of this study was to collect representative data on nitrogen, phosphorus, and suspended sediment concentrations in tributaries to the Great Bay Estuary in 2011. The study design followed the tributary sampling design which was implemented by the New Hampshire Department of Environmental Services between 2001 and 2007 and by the University of New Hampshire in 2008 and 2010, so …

Eelgrass Habitat Creation In Nantucket Harbor, Massachusetts, David M. Burdick, Gregg Moore, Chris Peter

Natural Resources & the Environment

In response to eelgrass habitat losses associated with development and marine activities in and around Nantucket Harbor, a plan to restore a meadow by transplanting eelgrass to previously vegetated areas was developed in conjunction with the Nantucket Land Council. Over 6,000 eelgrass shoots were sustainably harvested from an extensive bed within the Harbor that was located just west of First Point and near the inlet to Nantucket Sound. Four weeks following collection, impacts from our collection were shown by a 24% decline in shoot density, but live eelgrass cover did not decline significantly. After 12 weeks, no effects of collecting …

Fine-Scale Population Structure And Asymmetrical Dispersal In An Obligate Salt-Marsh Passerine, The Saltmarsh Sparrow (Ammodramus Caudacutus), Jennifer Walsh, Adrienne I. Kovach, Kimberly J. Babbitt, Kathleen M. O'Brien

New Hampshire Agricultural Experiment Station Publications

Understanding the spatial scale of gene flow can yield valuable insight into the ecology of an organism and guide conservation strategies. Fine-scale genetic structure is uncommon in migratory passerines because of their high vagility and presumed high dispersal abilities. Aspects of the behavior and ecology of some migratory species, however, may promote structure on a finer scale in comparison to their mobility. We investigated population genetic structure in the Saltmarsh Sparrow (Ammodramus caudacutus), a migratory passerine that breeds along the northeastern coast of the United States, where it is restricted exclusively to a narrow strip of patchily distributed tidal marsh …

Replication Protein A (Rpa70c) Negatively Regulates Ribonucleotide Reductase (Rnr) In The Model Plant Arabidopsis Thaliana, Stacy Wong

Honors Theses and Capstones

Replication protein A (RPA) is a heterotrimeric single-stranded DNA-binding protein that plays an important role in cellular responses to DNA damage. For example, RPA can activate the cell-cycle checkpoint protein ATR in the presence of persisting DNA damage. The model plant Arabidopsis thaliana has 5 functional homologous RPA70 genes which may play specific roles in response to DNA damaging agents. One chemical that causes DNA damage in Arabidopsis is Hydroxyurea (HU), which blocks DNA replication by inhibiting activity in Ribonucleotide Reductase (RNR), an enzyme responsible for the production of free deoxyribonucleotides (dNTPs). In studies of Arabidopsis mutants, atr plants, but …

Genetic Engineering Of Dunaliella: Potential For Improved Biofuel Production, Alison Wirshing

Honors Theses and Capstones

Biodiesel produced from algal lipids is a promising source of renewable energy. Reasons for using algae, as opposed to vascular plants, are numerous. Oleaginous algae do not require fertile land or fresh water to grow, and therefore do not compete with food crop resources. Algae have short generation times and higher growth rates than larger vascular plants allowing for synthesis and accumulation of large quantities of neutral lipids, about 20-50% of the dry cell weight, in a short period of time. The efficiency of biodiesel production from oleaginous algae could be improved by using transgenic (genetically engineered) algae. The goal …

The Effects Of Dependent Infants On The Social Behavior Of Mantled Howler Monkeys (Alouatta Palliate), Keziah Katz

Honors Theses and Capstones

Six weeks of observation on eight groups of wild mantled howler monkeys revealed that the presence of a dependent infant alters the frequency of social interactions between a female with an infant and other adult monkeys. Males preferred to spend time with females without infants but still spent more time with females with infants than with males. Females without infants spent significantly less time with females with infants than with males or other females without infants and females with infants decreased their frequency of social interaction overall without preference for males, females or other females with infants.

Transformation Of Tobacco With The Ba5 Cement Protein Gene From Balanus Amphitrite, Matt Marquis

Honors Theses and Capstones

Expressing barnacle cement proteins genes such as the BA5 gene in plants may enable individual study and analysis. This technique is effective since barnacle cement is difficult to work with as a whole in the lab setting. The BA5 gene extracted from Balanus amphitrite is transferred to tobacco leaf tissue using Agrobacterium tumefaciens.

Bigger Bodies, Bigger Bruises: How Men’S Collegiate Hockey Player Sizes Affect Injury Rates 1989-2004, Kimberly Deane

Honors Theses and Capstones

This study looks at men's collegiate hockey player sizes from 1989-2004 and correlates that data with the growth in injury rates seen within the same time period. Results show that player size (in terms of weight) has a statistically significant effect on player injury rates.

Defeating Cytoplasmic Sequestration Of P53 In Human Breast Cancer Cells; Is Mortalin Involved?, Sarah Yunes

Honors Theses and Capstones

Cytoplasmic sequestration of p53, possibly caused by p53 interacting with mortalin, can prevent p53 from functioning in DNA repair and apoptosis, causing aberrant growth. This project treated SKBR3 breast cancer cells with MKT-077, a dye that is a competitive binder to mortalin to see if it would result in the release of p53 from the cytoplasm and restoration of p53 function. Treatment resulted in partial translocation of a protein suspected to be p53 to the nucleus and apoptosis initiated at the mitochondria.

Crommet Creek Conservation Area Management Plan, Joanne Glode, Dea Brickner-Wood, Ed Robinson, Wendy Weisiger, Peter Wellenberger, Rachel Stevens

PREP Reports & Publications

The Crommet Creek Conservation Area comprises the largest block of natural lands in the immediate Great Bay watershed, and in New Hampshire’s North Atlantic Coast Ecoregion. It includes the entire watershed of two tidal creeks that flow directly into the Great Bay Estuary. The area has been identified by the Great Bay Resource Protection Partnership as a protection priority due to the size of the natural area; the diversity of habitats and wildlife it supports; and it’s integral role in protecting the regional water quality and resources within the Great Bay Estuary. The Conservation Area includes headwater wetlands, and the …