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Development And Validation Of A Three-Dimensional Optical Imaging System For Chest Wall Deformity Measurement, Nahom Kidane

Electrical & Computer Engineering Theses & Dissertations

Congenital chest wall deformities (CWD) are malformations of the thoracic cage that become more pronounced during early adolescence. Pectus excavatum (PE) is the most common CWD, characterized by an inward depression of the sternum and adjacent costal cartilage. A cross-sectional computed tomography (CT) image is mainly used to calculate the chest thoracic indices. Physicians use the indices to quantify PE deformity, prescribe surgical or non-surgical therapies, and evaluate treatment outcomes. However, the use of CT is increasingly causing physicians to be concerned about the radiation doses administered to young patients. Furthermore, radiographic indices are an unsafe and expensive method of …

Npgreat: Assembly Of The Human Subtelomere Regions With The Use Of Ultralong Nanopore Reads And Linked Reads, Eleni Adam, Desh Ranjan, Harold Riethman

Computer Science Faculty Publications

Background: Human subtelomeric DNA regulates the length and stability of adjacent telomeres that are critical for cellular function, and contains many gene/pseudogene families. Large evolutionarily recent segmental duplications and associated structural variation in human subtelomeres has made complete sequencing and assembly of these regions difficult to impossible for many loci, complicating or precluding a wide range of genetic analyses to investigate their function.

Results: We present a hybrid assembly method, NanoPore Guided REgional Assembly Tool (NPGREAT), which combines Linked-Read data with mapped ultralong nanopore reads spanning subtelomeric segmental duplications to potentially overcome these difficulties. Linked-Read sets of DNA sequences identified …

T-Cell Antigen Receptors In Multiple Sclerosis, Lisa Lanée Keyes Jones

Biomedical Sciences Theses & Dissertations

Multiple Sclerosis (MS) is T-cell mediated autoimmune disease characterized by inflammation, demyelination, and degeneration of axons in the brain and spinal cord. A T cell-mediated immune response in MS is directed against myelin components and possibly other antigens in genetically susceptible individuals and is triggered by a viral infection. The T-cell antigen receptor (TCR) on T cells is responsible for antigen recognition and determines specificity. Our overall hypothesis is to determine whether clonally expanded T cells in patients with MS recognize viral or self-antigens and to determine whether molecular mimicry is involved in the development of the disease. To study …

A Biomechanical Analysis Of Back Squats: Motion Capture, Electromyography, And Musculoskeletal Modeling, Eva Maria Urdiales Maddox

Human Movement Sciences & Special Education Theses & Dissertations

Previous literature evaluating maximal back squats have failed to identify key components of the study decisions and procedures that would allow for duplication. Firstly, the existence of a sticking region in maximally weighted resistance exercises is frequently discussed and has been described as a force-reduced transition phase between an acceleration phase and a strength phase of a lift. However, the etiology has yet to be agreed upon. Second, Electromyography (EMG) is frequently used to assess muscle activations. However, no best practice for EMG normalization has been proposed. Two methods are commonly implemented for normalizing EMG: a maximum voluntary isometric contraction …

Atlantic Surfclam (Spisula Solidissima) Population Demographics And Distribution Along The Middle Atlantic Bight, Mauricio González Díaz

OES Theses and Dissertations

The Atlantic surfclam (Spisula solidissima) is a long-lived benthic biomass dominant organism that occurs on the Middle Atlantic Bight (MAB) continental shelf between 10 m and 50 m. Trends in Atlantic surfclam population specific growth and mortality rates were analyzed using four decades of age and length observations obtained from NOAA stock surveys from the 1980s to 2010s in six regions distributed along the MAB. Atlantic surfclam specific growth rates and asymptotic lengths were estimated from the age and length observations using the von Bertalanffy growth model. The analysis showed that the Atlantic surfclam median asymptotic length in …

Integrative Physiology-Coupled Pilot-Centered Flight Simulation, Shawn C. Harrison

Electrical & Computer Engineering Theses & Dissertations

Maintaining the pilot’s physiological performance envelope within the limits of human capabilities may be crucial for avoiding hazardous physiological episodes in fighter aircraft that compromise safety. The main physiological episode of interest is impaired pilot respiration, better known as hypoxia caused by a high fraction of inspired oxygen (FiO₂) at high altitudes and variation in accelerative gravitational forces (g-forces). Integrated into fighter aircraft is an Onboard Oxygen Generating System (OBOGS) developed to mitigate the necessity of gaseous and liquid oxygen cannisters [1]. OBOGS act as a life support in hypoxic environments by providing oxygen-rich air, thereby oxygenating the …

Comparison Of Spine–Pelvis Kinematics Variability During Sit-To-Stand And Stand-To-Sit In People With & Without Chronic Low Back Pain: A Vector Coding And Statistical Parametric Mapping Approach, Narges Jangjoo, Elham Alijanpour, Saeid Khodabakhsh, Seyed Sadredin Shojaedin, Roozbeh Naemi

Rehabilitation Sciences Faculty Publications

There is evidence in the literature to suggest that low back pain may change spine–pelvis coordination during activities of daily living. This study aimed to compare the variability of the spine– pelvis coordination during sit-to-stand in people with and without LBP. Ten healthy individuals with a history of LBP and ten individuals without history of LBP participated in this study. Three-dimensional kinematic data of the upper trunk (UT), lower trunk (LT), lower back (LB), and pelvis segments during sit-to-stand and stand-to-sit were recorded using a multi-segmental spine and pelvis models using a motion capture system. The coordination patterns and the …

Participatory Mapping To Address Neighborhood Level Data Deficiencies For Food Security Assessment In Southeastern Virginia, Usa, Nicole S. Hutton, George Mcleod, Thomas R. Allen, Christopher Davis, Alexander Garnand, Heather Richter, Prachi P. Chaven, Leslie Hoglund, Jill Comess, Matthew Herman, Brian Martin, Cynthia Romero

Political Science & Geography Faculty Publications

Background: Food is not equitably available. Deficiencies and generalizations limit national datasets, food security assessments, and interventions. Additional neighborhood level studies are needed to develop a scalable and transferable process to complement national and internationally comparative data sets with timely, granular, nuanced data. Participatory geographic information systems (PGIS) offer a means to address these issues by digitizing local knowledge.

Methods: The objectives of this study were two-fold: (i) identify granular locations missing from food source and risk datasets and (ii) examine the relation between the spatial, socio-economic, and agency contributors to food security. Twenty-nine subject matter experts from three cities …

Modification Of The Tumor Microenvironment Enhances Anti-Pd-1 Immunotherapy In Metastatic Melanoma, Guilan Shi, Megan Scott, Cathryn G. Mangiamele, Richard Heller

Bioelectrics Publications

Resistance to checkpoint-blockade treatments is a challenge in the clinic. Both primary and acquired resistance have become major obstacles, greatly limiting the long-lasting effects and wide application of blockade therapy. Many patients with metastatic melanoma eventually require further therapy. The absence of T-cell infiltration to the tumor site is a well-accepted contributor limiting immune checkpoint inhibitor efficacy. In this study, we combined intratumoral injection of plasmid IL-12 with electrotransfer and anti-PD-1 in metastatic B16F10 melanoma tumor model to increase tumor-infiltrating lymphocytes and improve therapeutic efficacy. We showed that effective anti-tumor responses required a subset of tumor-infiltrating CD8⁺ and CD4 …

Wetlands In Our Backyard: A Review Of Wetland Types In Virginia State Parks, Kirsten Bauer, Benjamin K. Campbell

Virginia Journal of Science

Wetlands constitute a significant component of Virginia’s natural resources and heritage. Though historically they have been discounted—and often denigrated—the exceptional value of wetlands is currently growing in recognition and appreciation. In addition to the value provided by extracted resources and ecological regulation, wetlands also offer people the opportunity to enrich themselves through cultural, educational, and recreational pursuits. The state parks of Virginia provide access to a variety of ecosystems, including a wide array of wetland types. In this review, we document the diversity of wetlands in Virginia State Parks through a typology that groups wetland systems into the three principal …

Exploring The Experiences Of Runners With Visual Impairments And Sighted Guides, Lindsay E. Ball, Lauren J. Leiberman, Pamela Beach, Melanie Perreault, Jason Rich

Human Movement Sciences & Special Education Faculty Publications

: Running is a popular sport, and, with simple modifications, it can be accessible for individuals with visual impairments, particularly with a sighted running guide. The purpose of this study is to examine the experiences of runners with visual impairments and sighted running guides. Adopting a descriptive qualitative approach to guide data collection analysis and interpretation, seven runners with visual impairments and four sighted running guides were recruited and interviewed. The analysis identified four major themes: (1) benefits, (2) barriers, (3) advocacy, and (4) communication. The identified themes illustrate the influence of participation in running on the health and relationships …

Monarch Science Observer, Volume 15, College Of Sciences, Old Dominion University

College of Sciences Newsletter

Fall 2022, issue of Monarch Science Observer, ODU Colleges of Sciences Newsletter.

Nestedness And Modularity Of Avian Metacommunities Across Gradients Of Chesapeake Bay Island Characteristics, Grant Walter Bowers

Biological Sciences Theses & Dissertations

Islands are not only great models for understanding the ways in which communities are linked by the dispersal of their members to form metacommunities, but are of particular interest to conservationists. One important aspect of metacommunity structure is the degree of nestedness—whether or not less speciose communities are perfect subsets of more speciose communities. Another important metric of metacommunity structure is modularity—the degree to which communities belong to modules composed of other communities that share the same species but have little species overlap with communities from different modules. Environmental gradients have received insufficient attention as predictors of metacommunity nestedness and …

Investigating The Biorisk Of Genetically Engineered Thermosynechococcus Elongatus Bp1, Cherrelle Leah Barnes

Chemistry & Biochemistry Theses & Dissertations

Cyanobacteria, also known as blue-green algae, are an ancient group of microorganisms that use simple materials, such as sunlight, carbon dioxide and water, to produce energy while providing oxygen to the atmosphere by performing photosynthesis. Synthetic biology approaches have been employed with cyanobacteria as a platform to produce a range of products, such as biofuels, by inserting a series of genes into the cyanobacterial genome that will allow the conversion of metabolic intermediates to such desired products. Although these methods are promising, it is important to understand any potential bio-risk they pose. This research evaluates the potential bio-risk of genetically …

Physical Activity, Social Support, And Health-Related Quality Of Life In Adults With Visual Impairment, Tayah Lynn Otterness

Human Movement Sciences & Special Education Theses & Dissertations

The purpose of this study was to examine the relationship between participation in physical activity (PA), social support for exercise, and health-related quality of life (HRQoL) in adults with visual impairments (VI). Due to limited existing literature, this study was used to investigate variables that may impact HRQoL among the specified population. This study used a cross-sectional design and online surveys to determine relationships between the examined variables. Data was collected via Qualtrics Surveying and Google Forms Software. Physical activity was assessed using the International Physical Activity Questionnaire Short Version (IPAQ-SF), a 7-day recall of walking, moderate PA, vigorous PA, …

The Influences Of Disperser Behavior, Host Availability, And Environmental Conditions On The Distribution Of Oak Mistletoe [Phoradendron Leucarpum (Raf.) Reveal & M. C. Johnst.] In Eastern Virginia And North Carolina, Nicholas Pearce Flanders

Biological Sciences Theses & Dissertations

Mistletoes are shrubs that typically parasitize the branches of host trees and rely on avian frugivores for seed dispersal. Because mistletoes are restricted to a narrow range of suitable recruitment sites and avian frugivores are more visible than other guilds of seed dispersers, mistletoe-frugivore systems afford opportunities for assessing the roles of dispersal limitation and local environment in determining plant distribution. These mechanisms have been proposed as determinants of the observed association of oak mistletoe [Phoradendron leucarpum (Raf.) Reveal & M. C. Johnst.] with forested wetlands in eastern Virginia and North Carolina, USA. I tested the alternative hypothesis that …

Utilization Of Finite Element Analysis Techniques For Adolescent Idiopathic Scoliosis Surgical Planning, Michael A. Polanco

Mechanical & Aerospace Engineering Theses & Dissertations

Adolescent Idiopathic Scoliosis, a three-dimensional deformity of the thoracolumbar spine, affects approximately 1-3% of patients ages 10-18. Surgical correction and treatment of the spinal column is a costly and high-risk task that is consistently complicated by factors such as patient-specific spinal deformities, curve flexibility, and surgeon experience. The following dissertation utilizes finite element analysis to develop a cost-effective, building-block approach by which surgical procedures and kinematic evaluations may be investigated. All studies conducted are based off a volumetric, thoracolumbar finite element (FE) model developed from computer-aided design (CAD) anatomy whose components are kinematically validated with in-vitro data. Spinal ligament stiffness …

Engineering Of Ideal Systems For The Study And Direction Of Stem Cell Asymmetrical Division And Fate Determination, Martina Zamponi

Biomedical Engineering Theses & Dissertations

The cellular microenvironment varies significantly across tissues, and it is constituted by both resident cells and the macromolecules they are exposed to. Cues that the cells receive from the microenvironment, as well as the signaling transmitted to it, affect their physiology and behavior. This notion is valid in the context of stem cells, which are susceptible to biochemical and biomechanical signaling exchanged with the microenvironment, and which plays a fundamental role in establishing fate determination and cell differentiation events. The definition of the molecular mechanisms that drive stem cell asymmetrical division, and how these are modulated by microenvironmental signaling, is …

Clostridioides Difficile Biofilm And Spore Production In Response To Antibiotics And Immune Stress, Adenrele M. Oludiran

Chemistry & Biochemistry Theses & Dissertations

The development of new therapeutic options against Clostridioides difficile (C. difficile) infection is a critical public health concern, as the causative bacterium is highly resistant to multiple classes of antibiotics. C. difficile, an anaerobic spore-forming Gram-positive pathogenic bacterium, is a major cause of hospital-acquired infections. C. difficile persists in the environment and spreads the infection to new hosts in the form of dormant spores and can persist within hosts as surface-attached biofilms. These studies investigate bacterial vegetative cell survival, biofilm formation, and sporulation in response to stress. Antimicrobial host-defense peptides (HDPs) are highly effective at simultaneously modulating …

Ants And Spices: The Potential Of Spices To Repel Pest Ants (Formicidae), Jenny Vu, Hritam Mitra, Joe Steven Hardy, Nirupama Chauhan

2022 REYES Proceedings

We examined the spices nutmeg, cinnamon, Ngo Hiang Spice Mix (anise, galangale, cinnamon and star anise) and turmeric for repellent activity against foraging ants. Control baits consisting of a cracker substrate topped with granulated sugar were presented next to treatment baits (cracker, granulated sugar and spice spread over the sugar) to ants in natural habitats. After an hour, the numbers of ants recruiting to the control and treatment baits were recorded. Jenny Vu first tested nutmeg and then cinnamon; Hritam Mitra tested turmeric; Joe Steven Hardy tested Ngo Hiang Spice Mix and Nirupama Chauhan tested turmeric. Data were analyzed with …

Ants And Spices: Multiple Bioassays Investigating Turmeric (Curcuma Longa) And Chili Powder As Repellents For Ants (Formicidae), Luca Ben Yishay-Sapalio

2022 REYES Proceedings

Spices offer an environmentally friendly method of controlling ants (Formicidae) in homes. In this study, I used three bioassays to examine the effect of Turmeric (Curcuma longa) and one bioassay to examine the effect of Chili Powder as repellents for ants. Tests were conducted near active ants outdoors. All bioassays examined paired control and treatment baits along a transect, and control baits consisted of a small sheet of corrugated cardboard (a sterile yet easy to manipulate substrate) with granulated sugar on top. In the first bioassay, treatment baits were similar to controls but with Turmeric covering the sugar. …

Statistical Genetic Discoveries Using Restricted Maximum Likelihood Method, Erika Wu

2022 REYES Proceedings

In statistical genetics, genetic association and genomic prediction become more successful with a highly heritable trait. Identifying highly heritable components of a complex disease can thus advance scientific understanding of the disease and potentially lead to effective prevention and treatments. Using Matlab and existing large-scale genome datasets, we evaluate a restricted maximum likelihood approach to identify highly heritable components of a complex disease as a function of multiple clinical variables.

Addressing Public Perceptions About Cell-Based Meat And Cellular Agriculture Through Metaphors, Yvette Emma Hubbard

English Theses & Dissertations

Today’s food movement places organic, holistic, and natural foods as priority. The idea aims for better human health, a farm-to-table community, and environmental sustainability. Soon a new meat alternative will become part of the ongoing food movement. What is it? Cell-based protein. It is a protein alternative to livestock protein. It is real protein from a real breathing animal. Cell-based beef for example is grown in a lab with cells from a living cow that does not have to die or be slaughtered. It is destined to become the new protein architecture on the horizon. Parts of this paper are …

Mycobacteriosis Of Striped Bass (Morone Saxatilis) In Virginia Tributaries Of The Chesapeake Bay, Joshua S. Mcgilly

Biological Sciences Theses & Dissertations

Mycobacteriosis was first documented in Chesapeake Bay striped bass (Morone saxatilis) in 1997 after fish exhibited emaciation and skin lesions. Since it was first identified, studies of mycobacteriosis in the mainstem of the Chesapeake Bay (2003-2007) and the Rappahannock River (2005-2012) have shown high disease prevalence and disease-associated mortality. Until this study, no current prevalence data existed from the Rappahannock River, and no published prevalence data existed for the James River, leaving a gap in our understanding of this disease in major Chesapeake Bay tributaries. We began gathering mycobacteriosis prevalence data from an existing survey collecting striped bass …

Blood Lead Levels In Minority Children: A Case Of Environmental Racism, Erick Rivera

Sociology & Criminal Justice Theses & Dissertations

Racial minorities in the United States have suffered from being disadvantaged. Among these disadvantages is environmental racism. This includes minority communities being ‘sacrifice zones’ for toxic waste and being exposed to lead poisoning. The purpose of this study is to examine differences in blood levels between white children and children of color. This research will follow a bivariate model for the first research question, “Do youth of color (under the age of 18) have higher BLLs than white children?” The bivariate model will look at the relationship between ethno-racial group and BLLs. Specifically, an analysis of variance (ANOVA) will be …

The Associations Of Cardiovascular Disease, Physical Activity Intensities, And Measures Of Obesity On Static Balance In Middle-Aged And Older Adults, Hannah Martha Twiddy

Human Movement Sciences & Special Education Theses & Dissertations

The burden of falls is widely known in older adults, though less research has targeted middle-aged adults (40-64 years of age), particularly at the population level. The purpose of this dissertation was to explore the roles of cardiovascular disease, physical activity (PA) intensity, and body anthropometrics on balance among middle-aged adults. Study 1 sought to determine if balance was impaired in middle-aged adults with poor ankle-brachial pressure index (ABPI), a marker of cardiovascular disease. Study 2 determined the associations between PA intensity with odds of having good static balance. Study 3 explored how strongly a variety of anthropometric measures, including …

The Relationship Of Strength, Mobility, And Performance Variables On Throwing Speed In Baseball Catchers, Caleigh D. Hall

Human Movement Sciences & Special Education Theses & Dissertations

Baseball is a popular sport worldwide and has thus garnered significant research focus, predominately of pitchers and hitters. However, research involving catchers is scant despite their major influence and consistent presence throughout a game. Therefore, the purpose of this study was to determine the relationship of lower body strength and mobility and performance with throwing speed in baseball catchers. We hypothesized that strength and mobility would have a positive relationship with ball speed, peak power generated while rising out of the squat position would be positively related to ball speed, shorter ascent time would be inversely related to ball speed, …

Temporal Dynamics And Seed Dispersal In Plant-Frugivore Communities Of The Dominican Republic, Spencer Christian Schubert

Biological Sciences Theses & Dissertations

Plant-animal mutualisms are a foundational component of biodiversity in terrestrial ecosystems. Most tropical forest plants have adapted to produce fleshy fruits to attract frugivorous animals to disperse seeds. Interaction patterns among plant taxa and their seed dispersers are driven by a complex suite of factors involving their evolutionary history and environmental context, and the structure of these mutualistic networks are theoretically tied to their ecological function. I carried out a series of field studies to investigate the temporal dynamics of mutualistic interactions of plant and avian frugivore communities in the central Dominican Republic and how their characteristics affect seed dispersal …

Summer Food Habits Of Myotis Leibii In The Central Appalachians Ecoregion And Comparison To Similar Studies, John O. Whitaker Jr., Virgil Brack Jr., James D. Kiser Jr.

Virginia Journal of Science

Food habits of Myotis leibii, Eastern Small-footed Myotis, were studied during summer in the Central Appalachians Ecoregion. Moths were 70.0% of the diet by volume and were in 97.7% of samples (percent frequency). Beetles, flies, and spiders comprised much of the remaining diet. Percent volume and percent frequency metrics produce similar results. These data and past studies indicate this bat eats a relatively low-diversity diet centered on terrestrial-based arthropod prey across a broad geographical area, irrespective of season, sex, or age. The presence of spiders in the diet may indicate gleaning.

Understanding The Natural History Of Juvenile Amblyomma Maculatum In Southeastern Virginia, Christina Espada, Holly Gaff

College of Sciences Posters

Amblyomma maculatum, the Gulf Coast tick, is a species of increasing public health concern. Adult A. maculatum is a known vector of several pathogens including Rickettsia parkeri, the causative agent of Rickettsia parkeri rickettsiosis. Amblyomma maculatum has expanded northward from its historic range along the Gulf Coast, with populations reportedly establishing in southeastern Virginia in 2010. Recently established populations of A. maculatum tend to have higher R. parkeri infection prevalence compared to longer established populations. This pattern holds for all populations found so far in southeastern Virginia, with a prevalence of R. parkeri in about 60% of A. …