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Protocol For An Agent-Based Model Of Recombination In Bacteria Playing A Public Goods Game, Isaiah Paolo A. Lee, Omar T. Eldakar, J. Peter Gogarten, Cheryl P. Andam

Biology Faculty Articles

Agent-based models are composed of individual agents coded for traits, such as cooperation and cheating, that interact in a virtual world based on defined rules. Here, we describe the use of an agent-based model of homologous recombination in bacteria playing a public goods game. We describe steps for software installation, setting model parameters, running and testing models, and visualization and statistical analysis. This protocol is useful in analyses of horizontal gene transfer, bacterial sociobiology, and game theory.

For complete details on the use and execution of this protocol, please refer to Lee et al.¹

Oliver Agee Catfish Neurocranium, Charlotte R. Oliver, Kristina Agee, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 10.7 cm total length, [Catfish], collected by [Kerstetter].

Catfish Neurocranium 3-D Scan, Pamela Gonzalez, Jarod Johnson, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Addressing Water Hyacinth (Pontederia Crassipes) Impacts On Aquatic Biota In Lake Okeechobee, Joseph Salerno

All HCAS Student Capstones, Theses, and Dissertations

The incursion of water hyacinth, Pontederia crassipes in Lake Okeechobee has resulted in management systems to be implemented to reduce the coverage of the invasive macrophyte. Its residence in the Lake Okeechobee ecosystem and the effects it has on organisms in the lake, whether it be positive or harmful is unknown. This study attempted to assess the potential effects that water hyacinth has on aquatic biota in Lake Okeechobee. Biotic data were collected on open water, water hyacinth covered, and native vegetation covered habitats via hook-and-line fishing, electrofishing, baited minnow traps, and the sampling of plant roots over a thirteen-month …

Common Snook (Centropomus Undecimalis) Neurocranium, Ryan Robison, Lesley Wallace, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium length of 16.5 cm Common Snook (Centropomus undecimalis), collected from Dr. Kerstetter's Lab on 10/23 by Ryan Robison and Lesley Wallace.

Yellow Grouper (Epinephelus Awoara), Tyler Jurain, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Spawning Asynchrony Of The Endangered Acropora Cervicornis: Are Light Pollution And Abnormally Warm Temperatures The Culprits?, Krista Laforest

All HCAS Student Capstones, Theses, and Dissertations

The persistence of reefs relies on mature corals spawning synchronously to maximize fertilization and produce larvae to replenish local populations. Corals synchronize the release of gametes by responding to temperature, sun, and moon light cycles; however, abnormalities in these patterns can disrupt synchrony. This study is the first to describe regional asynchronous spawning of Acropora cervicornis by quantifying gamete development and spawning times among two reefs, an in situ nursery off Fort Lauderdale, and an in situ nursery in the Florida Keys. While A. cervicornis in the Florida Keys synchronously spawned within the predicted window of 2-5 days after the …

Jack Crevalle Neurocranium, Rodolfo A. Heredia, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Brown Bullhead Catfish (Ameiurus Nebulosus) Neurocranium, Reginald Leon Kempson Iii, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from [6.3] cm total length (30 cm) [Brown Bullhead Catfish (Ameiurus nebulosus)], collected from [Dr.Kerstetters lab] on [6/December/2023] by [Reginald Kempson III]

A Rapid Site Selection Assessment As An Indicator Of Stony Coral Microfragment Outplant Success, John J. Alfirevich

All HCAS Student Capstones, Theses, and Dissertations

Microfragmentation of massive stony coral species is a technique being utilized to propagate corals asexually to help restore coral reefs. Microfragmentation consists of cutting corals into 3 cm diameter or less fragments, which boosts growth rates. However, in some locations the size of microfragments make them vulnerable to parrotfish predation and benthic overgrowth, reducing survival. As such, a method to identify key site characteristics which promotes microfragment outplant success, particularly one that can be performed quickly across multiple areas is needed. A rapid site assessment conducted prior to microfragment outplanting was performed at 12 randomly selected sites within the Kristin …

Fishing And Fear Effects Interact To Shape Herbivory On Coral Reefs, Bethany M. Tilton

All HCAS Student Capstones, Theses, and Dissertations

Predation influences animal behavior and shapes ecological structure and function through lethal effects and fear effects. On coral reefs, fear effects can alter the distribution and intensity of herbivory by herbivorous reef fishes. This includes the browsing functional group, which potentially reverses macroalgal phase shifts and promotes reef recovery. Herbivory by multiple functional groups may increase on coral reefs through the use of NTZs (no-take zones) but few studies have examined the extent to which small-scale NTZs (< 0.5 km²) influence fear effects and perceived predator presence on reefs. This study aimed to determine whether fear effects on browsers on …

Gag Grouper (Mycteroperca Microlepis) Neurocranium, Sierra Potts, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

10 cm neurocranium from Gag Grouper, Mycteroperca microlepis, collected from Snapper Mike's on 05/11/2023 by Sierra Potts

Evaluating The Effectiveness Of The Internal Transcribed Sequences (Its) As Dna Barcodes To Estimate Fungal Diversity, Jailisa Linares

All HCAS Student Capstones, Theses, and Dissertations

Universal phylogenetic markers such as the nuclear ribosomal internal transcribed sequences (ITS), specifically ITS1 and ITS2, are routinely used to estimate fungal diversity in environmental samples. However, numerous studies report differences in the performance and efficacy of ITS1 and ITS2 in documenting fungal diversity. To better understand the implications of using ITS1 versus ITS2, a comprehensive representation of the diverse fungal taxa was necessary to conduct a meta-analysis of their use across multiple fungal taxa. In order to address this, a thorough literature review was conducted to compare and contrast the use of ITS1 and ITS2 as effective DNA barcodes. …

Psammocora Stellata Distribution At Devil's Crown, Floreana Island, Galápagos Islands, Ecuador, María José Guarderas Sevilla

All HCAS Student Capstones, Theses, and Dissertations

In the Galápagos Archipelago, the free-living nodular coral Psammocora stellata is a common species that does not form reef structures. However, it is a key component of the ecosystem by increasing habitat complexity and, consequently, species diversity. This species experienced a drastic decline in Devil’s Crown channel, Floreana Island, where it disappeared after the 1982-83 El Niño-Southern Oscillation, presumably by displacement of unattached colonies by strong surface waves and currents. This assemblage has now recovered to pre-impact levels. A combination of underwater photoquadrats from 2007 and 2009 and recent (2023) orthomosaics were used to determine changes in coral densities and …

Parrotfish Skull, Grace Mikus, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Serranidae Spp. Neurocranium, Justin Abonce, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Rainbow Parrotfish Neurocranium, Theophilus J. Hebert, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Do Mesopelagic Fish Biomass Patterns Change In Response To Major Oceanographic Features In The Northern Gulf Of Mexico?, Ian M. Areford

All HCAS Student Capstones, Theses, and Dissertations

In recent years interest in mesopelagic fishes has grown due to their ecological significance and economic potential. A major outstanding question is how the assemblage is potentially structured by mesoscale (10 - 100s km) oceanographic features such as eddies, fronts, and riverine plumes. Mesoscale features are known to influence micronekton and zooplankton’s spatial distributions but data on individual mesopelagic fish species’ responses are limited. The Gulf of Mexico (GoM) is an area of particular interest due to its diverse mesopelagic fish assemblage, its well-defined mesoscale oceanographic features, its history of anthropogenic impacts such as oil spills, and its diverse mesopelagic …

Yellowtail Snapper Ocyurus Chrysurus, Kevin Rafferty, Manuel Ploner, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

YELLOWTAIL SNAPPER OCYURUS CHRYSURUS 7.5CM Total length

Lionfish (Pterois Volitans) Neurocranium, Kate Heffner, Hosanna Gattle, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 30 cm total length (TL) Lionfish (Pterois volitans), collected from Second Reef on 15/10/2023 by Kate Heffner.

Yellow Edge Grouper (Hyporthodus Flavolimbatus) Neurocranium, Lili Mcelhill, Alison Novara, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium (11 cm) of Yellow Edge Grouper (Hyporthodus flavolimbatus), collected from South Florida local fish market on 02/11/2023 by Alison Novara and Lili McElhill.

Jackfish (Caranx Lugubris) Neurocranium, Lauren Groves, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 9 cm total length (TL) Jackfish, Caranx lugubris, collected from Ideal Market on September 18th, by Lauren Groves

Northern Red Snapper (Lutjanus Campechnus) Neurocranium, Ajani K. Saldana, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 7.5 cm total length (TL) 37 cm Lutjanus campechanus (Northern Red Snapper), collected from Mango Tree Supermarket in September 2023 by Ajani Saldana

Brha, Kevin Rafferty, Briana K. Zaffiro, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Skull from Broad-winged Hawk (Buteo platypterus).

Blsk 3d Scan, Kevin Rafferty, Briana K. Zaffiro, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Skull from Black Skimmer (Rhnchops niger)

Ictalurus Punctatus (Channel Catfish) Neurocranium, Kayla D. Jones, Maura P. Wondra, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 9.70 cm total length (TL) Ictalurus punctatus (Channel Catfish), collected from Davie, Florida in June 2023 by Katrina Sawickij.

[Caranx Hippos (Jack Crevalle)] Neurocranium, Liat N. Castillo, Dylan J. Seiffert, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from [80cm TL] Caranx hippos (Jack Crevalle), collected from Merrit Island, Florida [9/18/2023] by Dylan Seiffert.

Channel Catfish (Ictalurus Punctatus), Neurocranium, Corinne Renshaw, Brianna Buckley, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 4.9 cm total length 20.6 cm Ictalurus punctatus (Channel Catfish), collected from Dr. Kerstetter's dissection specimens.

No “Jitters” But No Energy From A Commercially Available Energy Drink., Jose Antonio, Jason M. Curtis

Journal for Sports Neuroscience

Abstract

Introduction: The purpose of this study was to determine the effects of an energy drink (JOCKO GO) on mood, sustained attention/reaction time, and hand steadiness.

Methods: A total of 29 active men (n = 9) and women (n=20) (mean ± SD: age 22 ± 5 yr.; height 168±8 cm; body mass 68.2 ± 12.8 kg; lean body mass 51.9 ± 15.0 kg; fat mass 15.4 ± 6.8 kg; percent body fat 22.6 ± 8.9%; total body water 38.6 ± 8.6 liters) completed this randomized, crossover, counterbalanced trial. Each subject consumed either one can (355 ml) of the energy …

Blue Runner (Caranx Crysos) Neurocranium, Delaney Deinlein, Gabriel Droz, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from approximately 30 cm total length (TL) Blue Runner (Caranx crysos), collected from Dania Pier in 2023 by Charles Klinger.