Digital Commons Network^™

Regulation Of Serpina1 Mrna Expression By Environmental Conditions In Hepatocyte Cells, Fnu Jiamutai

All Theses

The SERPINA1 gene encodes the critical protease inhibitor α-1-antitrypsin (A1AT). A1AT represses neutrophil elastase activity to protect lung tissue from inflammatory damage. A deficiency in α-1-antitrypsin can lead to chronic obstructive pulmonary disease (COPD). Pathogenic genetic variants in SERPINA1 are also associated with A1AT protein misfolding and liver cirrhosis. The regulatory mechanisms of SERPINA1 expression are not well understood, but previous studies suggest that alternative polyadenylation in the 3' untranslated region (3'UTR) affects A1AT protein expression. In this study, we used the liver cancer cell line HepG2 to determine how environmental conditions influence SERPINA1 mRNA expression and post-transcriptional regulation. We …

Unraveling Wetland Ecology: The Effect Of Abiotic Heterogeneity And Habitat Size On Wetland Plant Diversity In The Piedmont, Gregory T. Gilmore

All Theses

Ecosystems around the world are seeing an unprecedented decline in biodiversity. However, to better prevent this decline we cannot only understand the drivers of biodiversity loss, but also the factors that support diversity. Traditional ecological hypotheses such as the Habitat Heterogeneity Hypothesis (HHH) and the Theory of Island Biogeography (TIB) have provided frameworks for understanding biodiversity drivers. However, recent research suggests a more nuanced relationship between heterogeneity, habitat size, and diversity than previously thought. This study looks to bridge existing research gaps by examining the ecologically and conservational important habitat of wetlands. Specifically, the study focuses on the plant diversity …

Factors Influencing Adventitious Root Formation Of Floral Hemp In Propagation, Alexandra Carver

All Theses

Commercial propagators have reported relatively poor propagation success, e.g., <75% rooting, for many hemp (Cannabis sativa) cultivars. These rooting percentages have a significant economic impact due to the wasted labor, space and supplies. Also, the market demands 100% of the propagation cells in a tray to be fully rooted, thus repairing and replacing poorly rooted or unrooted cuttings requires significant labor cost. The goal of this thesis was to evaluate several factors that influence adventitious root formation of hemp stem cuttings.

Chapter 2 describes an experiment conducted to identify rooting hormone treatments that could improve propagation success. Sixteen combinations of indole-3-butyric acid (IBA; 0, …

Effects Of The Sea Level Rise And Hurricanes In The Coastal Forest Of South Carolina, Siddhartha Regmi

All Theses

Accessing the mortality of the trees following any disturbances is of great interest to researchers in forestry science. This thesis project assessed topographic factors to explain the patterns of tree mortality after Hurricane Hugo in 1989 and investigated continuous tree mortality in relationship to important covariates using long-term data. Aerial photographs were taken one year after Hurricane Hugo, and long-term monitoring plots were set up five years after the hurricane to collect multi-year data. Analysis and visualization showed higher mortality in concave areas near the marsh at approximately 1-2m elevation and 120-180m far from streams after Hurricane Hugo. A model …

Influence Of Row Pattern And Prohexadione Calcium On Peanut (Arachis Hypogaea L.) Maturity And Profitability, Samantha N. Mehl

All Theses

Many newer peanut cultivars offer yield benefits but have larger canopies and are taking 10 or more days longer to reach desired maturity levels. Prohexadione calcium (PC) and twin row planting pattern have been reported to increase the amount of orange, brown or black pods compared to their respective alternatives. Four cultivars were selected and studied based on frequency of use in South Carolina then paired into an earlier maturing group that reached optimal maturity at 135 to 140 days after planting, and a later maturing group that reached optimal maturity at 150 or more days after planting.

Twin row …

Interactions Between High-Pressure Processing And Natural Antimicrobials In Ground White-Meat Chicken: An Analysis Of Microbial, Textural Charactheristics And Physicochemical Changes, Amalia M. Diaz Alejandro

All Theses

High Pressure processing is an innovative technique for preserving a wide variety of foods, including meat, and this method is increasingly used to satisfy consumer demand for quality food products. High-pressure treatment can impact, negatively or positively, various aspects of meat quality, including color, texture, protein denaturation, and microbial stability, particularly when food products are processed at ambient or low temperatures. By minimizing thermal exposure, appropriate high-pressure ranges help to prevent quality and nutrition degradation, reduce microbial contamination, and enhance tenderness.

The first objective of this research was to examine the influence of high-pressure processing and addition of natural antimicrobials …

I’M A Forest, Not A Saltmarsh, Captain: Carbon And Sap Flow Dynamics In Coastal Forested Wetlands Of The Southeastern United States, Chris Shipway

All Theses

Coastal forested wetlands are identified as some of the highest-priority ecosystems for climate change mitigation. Here, we present two studies conducted in these unique ecosystems.

The first assessed changes in aboveground vegetative C stocks along the estuarine-riverine gradients of the Winyah Bay in South Carolina and the Savannah River in Georgia, using a space-for-time substitution to increase understanding of the impacts to upper estuarine forested wetlands from relative sea level rise. Standing C stocks on the Savannah River averaged 183.6 Mg C ha^-1, while sites on the Winyah system averaged 162.3 Mg C ha^-1. The largest …

Pfos Alters Metabolism In The Liver And Skeletal Muscle Of Cyp2b-Null And Humanized Cyp2b6-Transgenic Mice, Lanie Williams

All Theses

Perfluorooctanesulfonate (PFOS) is a persistent environmental pollutant previously used in industrial products such as fire-fighting foams, furniture, and stain-resistant coatings. PFOS is associated with adverse health outcomes, including hepatosteatosis and diabetes. Previously, humanized CYP2B6-transgenic (hCYP2B6-Tg) mice accumulated more PFOS than Cyp2b-null mice and experienced greater mortality; however, the Cyp2b-null mice experienced greater steatosis. Cyp2b-null and hCYP2B6-Tg mice were treated with 0, 1, or 10 mg/kg/day PFOS for 21 days. To determine how PFOS affected the metabolism of polyunsaturated fatty acids (PUFAs) oxylipin concentrations were measured via LC-MS/MS. Additionally, gene expression changes were measured using RNA sequencing. PFOS treatment increased the …

Evaluation Of Subjective And Objective Workload Of Forestry Professionals, Hasini L. M. Mapatunage

All Theses

The Southern United States accounts for about 40% of the productive timberland of the country and is known as the wood basket of the United States. Timber logging is an important contributor to South Carolina’s economy. Feller-buncher, skidder and loader operators play a vital role in the timber industry of South Carolina. However, their job is far from easy, especially as there are only a few members of a logging crew. They have to operate complex heavy machinery in challenging terrains while ensuring the efficient harvesting of timber, which demands extraordinary skills, precision, and better decision-making, leading to excessive mental …

Tri-Colored Bat Habitat Use And Selection In Northwestern South Carolina, Eduardo Rosales

All Theses

North American bat populations continue to be decimated by many factors, with the largest contributor being white-nose syndrome (WNS). In recent years researchers have noted the importance of fat reserves pre- and post-hibernation (fall and spring) and how they may influence WNS survival and recovery respectively. Tri-colored bats (Perimyotis subflavus) are one of the four species most impacted by WNS but have received the least research. Further, thus far all research on tri-colored bat resource selection has been gathered during summer and winter, highlighting the need for habitat selection studies during the fall and spring pre- and post-hibernation …

Changes In Soil Chemical Attributes, Horticultural Performance And Fruit Yield Of Peach Cultivars Following Preplant And Annual Applications Of Composted Mulch Amendments, Jeffrey Hopkins

All Theses

Southeastern peach orchards often have poor soil quality due to native soil composition, intensive farming practices and generational replanting of trees in the same locations. This study investigated using mulch amendments to improve the chemical and physical quality of soil prior to planting a new peach orchard. At the beginning of the four-year study, a single-ground municipal composted mulch was incorporated into the soil at two different rates and three cultivars of peaches, ‘Rubyprince’, ‘Julyprince’, and ‘BigRed’ were planted on berms. Thereafter, the same mulch product was annually applied to the top of the berms at two different rates to …

Yield And Nutritive Quality Of Fresh And Ensiled Reduced Lignin Alfalfa In Monoculture And Diculture With Novel Tall Fescue, Morgan Boss

All Theses

The objectives of this research were to: (1) evaluate the yield, nutritional value, and digestibility of fresh and ensiled reduced lignin alfalfa (RLA; Medicago sativa L.) in monoculture and when mixed with novel endophyte-infected tall fescue (F; Festuca arundinacea) in comparison to a conventional alfalfa (CA) cultivar; and (2) evaluate ensiled samples under varying DM concentrations; with or without inoculant. A trial was prepared as a randomized complete block design with 4 replicates per treatment. Treatments included reduced lignin alfalfa (RLA), conventional alfalfa (CA) and tall fescue (F) plots as well as RLA/F and CA/F plots. Plots were harvested on …

The Spatial And Behavioral Ecology Of The Eastern Box Turtle In A Suburban Landscape, Emma Rogers

All Theses

Urbanization poses a significant threat to wildlife through fragmentation, degradation, and loss of habitats. Species response to urban development is variable, from species that thrive in urban areas to those that avoid them. Eastern box turtles (Terrapene carolina carolina) can live and reproduce in urban areas; however, reports of population decline throughout the species’ range have raised concerns. The objective of this study was to compare home range size and composition, as well as the microhabitat selection of the Eastern box turtle across a developmental gradient in Clemson, SC. We tracked 14 individuals in habitats along a developmental …

Photobiomodulation Of Bovine Oocytes During Maturation Increases Atp Content And Enhances Subsequent Embryonic Development, Kendall Richey

All Theses

Bovine in-vitro production(IVP) of embryos is a growing field for producing offspring with desirable genetics in the cattle industries. While IVP is effective, oocyte cytoplasmic maturation is compromised, and bovine oocytes matured in-vitro have reduced metabolic activity than those matured in-vivo. Mitochondria are the central unit of oocyte metabolism, producing ATP through OXPHOS. Photobiomodulation is a light treatment reported to improve metabolic activity. In five experiments, we measured the effects of photobiomodulation treatment with red LED at 16-(L-16) and 20 h(L-20) of bovine oocyte in-vitro maturation on subsequent embryonic development, mitochondrial activity and nuclear progression. Bovine COCs were aspirated …

Effect Of Source Of Trace Minerals On Nutrient Digestibility And Rumen Fermentation Of Dairy Cows, Cesar Velasquez Rios

All Theses

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The Historical Biogeography Of Spiny Lobsters In The Genus Panulirus And The Influence Of Environmental Conditions On The Adaptive Evolution Of Mitochondrial Protein-Coding Genes In The Achelata, Alyssa Baker

All Theses

Contemporary and historical changes in marine environmental conditions influence biodiversity drastically. In marine invertebrates with highly dispersive planktonic larvae, diversification is facilitated or constrained by tectonic plate movements altering geography, prevailing current patterns, and climate. The decapod crustacean infraorder Achelata, which contains the spiny (fam. Palinuridae) and slipper (fam. Scyllaridae) lobsters, is characterized by a long-lived phyllosoma larvae stage. Panulirus is the most economically significant and speciose genus of spiny lobsters, with 20 recognized extant species and 5 subspecies distributed throughout shallow tropical and subtropical oceans worldwide. Diversification within these lineages has been proposed to be primarily driven by geological …

Characterization Of Ato Family Transporters In The Fungal Pathogen Cryptococcus Neoformans, Will Betsill

All Theses

Fungal pathogens are a significant threat to public health as they are becoming increasingly common and more resistant to treatment. Cryptococcus neoformans contributes greatly to this threat annually by causing an estimated 278,000 cases of cryptococcal meningitis resulting in approximately 181,000 deaths globally according to the CDC. C. neoformans is ubiquitous across most of the globe and can be found in such places as in trees or soil. Exposure to this fungus is especially dangerous to individuals who are immunocompromised or immunosuppressed. In these cases, inhalation of spores can lead to infection in the lungs. Once in the lungs, C. …

Broadening The Application Range Of Cell-Free Protein Expression Systems, Matthew Becker

All Theses

Centralized protein manufacturing platforms make the delivery of needed therapies to places with limited infrastructure almost impossible. Cell-free protein expression systems, systems that utilize protein production machinery extracted from cells, offer these communities a viable protein expression platform that is robust and easily deliverable to the place of need. Much work in cell-free system engineering looks to increase the hardiness of cell-free system (CFS) components, like the extract and reaction buffer, needed to carry transcription and translation of gene therapeutic targets forward. Freeze- and air-drying of extract, reaction buffer, or both with certain additives, like sugar molecules, has been proposed …

An Evaluation Of Potential Biocontrol Agents For Anoplophora Glabripennis (Coleoptera: Cerambycidae) In South Carolina, U.S.A., Marina Lupu

All Theses

The Asian longhorned beetle (Anoplophora glabripennis Motschulsky, hereafter ALB) was named one of the world’s top 100 worst invasive species by the Global Invasive Species Database, as it threatens several species of hardwood trees in North America. In May of 2020, the southernmost infestation of ALB in North America was discovered near Hollywood, South Carolina, U.S.A. Current eradication efforts focus on tree removal; however, in ecosystems with rugged or flooded terrain, or otherwise inaccessible and vulnerable natural areas, tree removal is a costly and potentially environmentally damaging endeavor that may not be feasible as a management tactic. In these …

Assessing Equitable Distribution Of The Urban Tree Canopy At The Neighborhood Scale In Greenville, South Carolina., April Riehm

All Theses

We are living in an era that necessitates adaptation and resilience. The Earth is warming. Our climate has changed (EPA, 2016). Our planet is also rapidly urbanizing. It is predicted that 68% of people will live in cities by 2050. The City of Greenville is a rapidly growing city in South Carolina that has been losing its tree canopy to development(City of Greenville, 2023). The Urban Tree Canopy (UTC) is a community asset that provides many quality-of-life benefits including improved air quality, stormwater management, carbon sequestration, mental and physical well-being, increased mobility and access, aesthetics, a reduction in energy costs, …

The Effect Of Chlorine Dioxide On Sliced Tomatoes Used In Retail And Foodservice, Charles Mattocks

All Theses

As food prices continue to rise, many consumers are looking at ways to cut back on spending and many look to how much they spend on food. Food waste in an average American household of four leads to about $1,500 worth of unused/wasted food annually,

This study was conducted to see how the use of Chlorine Dioxide (ClO₂) could be used to treat and extend the shelf life of freshly sliced tomatoes for food service applications. Prior research in this regard has looked at whole tomatoes as opposed to sliced varieties, and many have not utilized a sensory …

A Genome Wide Association Study Of Heat Tolerance In Snap Bean (Phaseolus Vulgaris), Morgan Stone

All Theses

Bean production in the United States has decreased while the temperatures have been steadily increasing, reaching new highs each year. Heat stress is detrimental to common bean (also known as snap bean) production. Symptoms of heat stress include decrease in pollen viability, shriveling of pods, and pod abortion making them unmarketable. Pod production of 323 snap bean accessions from a large diversity panel was assessed in a randomized complete block design with field trials at two different times in the spring season. The results show a significant decrease in the number of pods produced per plant and weight of pods …

The Chemical And Physical Analysis Of Hiveless Tm A Plant Based Honey Alternative, Javin Goodine

All Theses

Honey is perhaps the oldest and one of the world's most widely used natural sweeteners. It is a viscous, sweet, golden substance bees produce via natural enzymatic and physical modification of flower nectar. It has long been prized for its unique flavor and medicinal properties. It can be incorporated into many applications, such as bread, cured meats, alcohol, condiments, candy, pharmaceuticals, and skin care products. In 2022 alone, America consumed over 600 million pounds of honey (Board Reports, 2023), but less than a fifth of that was produced domestically, the rest imported from other countries. The international honey trade can …

Enabling Breeding For Fruitlet Freeze Tolerance In Peach, Ufuk Caglar

All Theses

Climate change is affecting the production of temperate fruit crops, with cold temperatures emerging as a critical abiotic stressor that limits plant growth and performance. Freeze damage, particularly in spring, has resulted in significant economic losses in peach production in the southeastern United States. Research efforts in peach and other Prunus species have primarily focused on studying dormancy-related traits associated with bloom time, such as chill and heat requirement, with fruitlet freeze tolerance not equally represented. Breeding for climate resilience in peach requires a combination of these traits to allow for late bloom via targeted chill requirement and high heat …

Rapid Leaf Senescence Symptoms Are Related To Carbohydrate Depletion In Cut Chrysanthemums, And Strategies For The Symptoms Reduction, Shara Ortiz Carvajal

All Theses

Chrysanthemum (Chrysanthemum ×morifolium) is the second-largest exported cut flower worldwide; however, some cultivars exhibit rapid leaf senescence during their first week of vase life. This phenomenon negatively impacts consumer perception of plant quality, and its cause has been unknown. Experiments were performed in Colombia on cut chrysanthemums shipped to the U.S. for vase-life evaluation. After 10 d, the severity of leaf senescence symptoms was recorded. Experiments examined the effect of flower form [disbud (one flower per stem) versus spray (5-10 flowers per stem)], the effect of time of harvest (A.M. versus P.M.), and sugar sources (dextrose, fructose, mannitol, and sucrose) …

Germination Trends Of American Chaffseed, Schwalbea Americana L., And Factors Affecting First-Year Seedling Development, Trenton Miller

All Theses

Following centuries of exploitation and fire suppression, longleaf pine systems are now the focus of many conservation efforts. Efforts to restore populations of Schwalbea americana L. in longleaf pine savannas have been met with frustratingly low recruitment. While past studies have briefly quantified germination rates for Schwalbea, there have not been any studies yet that truly investigate this plant’s germination requirements. Additionally, there has been little research into characterizing the parasitic relationship between Schwalbea and its various host species. We conducted a germination study in a growth chamber that investigated Schwalbea’s germination rate and time to germinates as …

Thawing And Storage Effects On Quality Of Plant-Based Sausage Patties, Dakota Cook

All Theses

Maintaining sausage analogue quality during a thawing process and storage is important for increasing consumer satisfaction. Following new trends and prevalence of plant-based meats and a flexitarian diet, two experiments were conducted to test how thawing methods (experiment 1) and storage temperatures (experiment 2) affect meat analogue quality. For Experiment 1, Jimmy Dean Original Sausage Patties Made with Pork & Turkey, Morningstar Veggie Original Patties and Beyond Sausage Original Patties were purchased pre-frozen and subsequently thawed in one of three ways: 1. thawed at 4°C for 24 hours, 2. thawed at room temperature (22°C±2°C) for 4 hours and 3. thawed …

The Floral Thermal Environment: Physical, Morphological, And Environmental Determinants, And Their Impact On Plant-Pollinator Interactions, Jennifer Apland

All Theses

Anthropogenic climate change is driving major shifts in global temperatures and increases in extreme temperature events that contribute to reduced survival and species loss. To counteract extreme temperatures, many organisms can undergo geographic range shifts or engage in behavioral thermoregulation (e.g., movement to suitable microhabitats). While plants are sessile and thus subject to highly variable ambient temperatures, they have evolved mechanisms to regulate internal floral temperature. Floral thermoregulation may mitigate thermal stress on pollen and ovules and impact plant-pollinator interactions. These mechanisms for thermoregulation are often highly dependent on ambient temperature and solar radiation as most plants are not endothermic. …

Developing Rapid Indicators To Detect Micropollutants In Coastal Blackwater Rivers In South Carolina, Lydia Winn

All Theses

Micropollutants in water sources are found in higher concentrations in areas with high levels of urban and agricultural land. These pollutants can be introduced into water sources during storms and rain events, through water treatment outputs, and commercial or residential waste. These events increase the levels of both nutrients and micropollutants in these water sources. With increasing levels of micropollutants in rivers, this study’s goal was to develop an alternative detection method or an indicator test for the levels of micropollutants in water. We first proposed the use of amicrobial fuel cell (MFCs) operating as a biosensor could be utilized …

The Effects Of Sous Vide Cooking And Cysteine Proteases On Instrumental And Sensory Textural Properties Of Lower Value Cuts Of Beef, Ian Smith

All Theses

Sous vide cooking has the potential to increase the value of lower quality cuts of beef. Understanding the textural properties following a cook-chill sous vide process is crucial to maximizing this potential. The use of enzymes may further increase the value of these products if able to positively alter the texture of the final product.

The first research objective was to use instrumental texture analysis to evaluate potential relationships between enzymatic treatments and sous vide processing time of lower value cuts of beef. Three cuts were evaluated: infraspinatus (top blade), semitendinosus (eye of round), and beef tongue. Infraspinatus and semitendinosus …