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Hucopia: An Atlas Of Human Vs. Sars-Cov-2 Interactome And The Comparative Analysis With Other Coronaviridae Family Viruses, Naveen Duhan, Rakesh Kaundal

Plants, Soils, and Climate Faculty Publications

SARS-CoV-2, a novel betacoronavirus strain, has caused a pandemic that has claimed the lives of nearly 6.7M people worldwide. Vaccines and medicines are being developed around the world to reduce the disease spread, fatality rates, and control the new variants. Understanding the protein-protein interaction mechanism of SARS-CoV-2 in humans, and their comparison with the previous SARS-CoV and MERS strains, is crucial for these efforts. These interactions might be used to assess vaccination effectiveness, diagnose exposure, and produce effective biotherapeutics. Here, we present the HuCoPIA database, which contains approximately 100,000 protein-protein interactions between humans and three strains (SARS-CoV-2, SARS-CoV, and MERS) …

In Silico Screeing Of Natural Compounds As Novel Drug Targets For Treatment Of Multiple Myeloma, Rousselene Larson

Student Research Symposium

In Silico Screening of Natural Compounds as Novel Drug Targets for The Treatment of Multiple MyelomaRousselene Larson1 2, Naveen Duhan1, and Rakesh Kaundal1 2 *1Department of Plants, Soils, and Climate, College of Agriculture and Applied Sciences; 2Bioinformatics Facility, Center for Integrated BioSystems; Utah State University, Logan, UT 84322 USA* corresponding author (e-mail: rkaundal@usu.edu)Telephone: +1 (435) 797-4117Fax: +1 (435) 797-2766Abstract: Multiple Myeloma (MM) is an incurable hematological malignancy cancer characterized by excessive clonal plasma cell proliferation in the bone marrow. In the United States, MM is the second most prevalent type of cancer that affects about 4 in 100,000 Americans. Toxicity …

Down Regulation Of Vestibular Balance Stabilizing Mechanisms To Enable Transition Between Motor States, Romain Tisserand, Chris J. Dakin, Machiel H. F. Van Der Loos, Elizabeth A. Croft, Timothy J. Inglis, Jean-Sebastien Blouin

Kinesiology and Health Science Faculty Publications

The neural control of transition between posture and movement encompasses the regulation of reflex-stabilizing mechanisms to enable motion. Optimal feedback theory suggests that such transitions require the disengagement of one motor control policy before the implementation of another. To test this possibility, we investigated the continuity of the vestibular control of balance during transitions between quiet standing and locomotion and between two standing postures. Healthy subjects initiated and terminated locomotion or shifted the distribution of their weight between their feet, while exposed to electrical vestibular stimuli (EVS). The relationship between EVS and ground reaction forces was quantified using time-frequency analyses. …

Commentary Distance-Dependent Effectiveness Of Diversionary Bear Bait Sites, Stephen Stringham, Ann Bryant

Human–Wildlife Interactions

We (Stringham and Bryant 2015) previously reported on Bryant’s experiment in diversionary baiting of black bears (Ursus americanus). This occurred during the historically severe drought of 2007, in the Lake Tahoe Basin at the border of California and Nevada, USA. Effectiveness of baiting was inversely related to each community’s distance from the bait site. That has provoked the question whether conflict rates during the period of baiting would have fallen anyway even without baiting. We show here that the general trend during both pre and post-baiting years (2005–2006 and 2008–2009) was for an increase in conflicts during the …

Modulation Of Fast And Slow Inactivation In Two Cardiac Nav Channel Isoforms By Sdz 211-939, Tyce Jeffrey Kearl

Undergraduate Honors Capstone Projects

Here we report a hitherto unknown effect of a synthetic inactivation inhibitor on inactivation in cardiac sodium channels (Na_v1.5) from two different species: human and bovine. SDZ 211-93 9 stabilized the slow inactivated-state in both channels as seen by an increased steady-state probability of slow inactivation. SDZ also destabilized the fast-inactivated state and increased the amplitude of persistent currents. SDZ modulated conductance parameters, open-state fast inactivation time constants, and activation kinetics of hNa_v1.5, but not bNa_v1.5. These findings will aid future studies designed to elucidate the binding site and molecular mechanisms of inactivation inhibitors …

The Ins And Outs Of Fluoride In Human Nutrition, Georgia C. Lauritzen, Deloy G. Hendricks, Ann Baker

All Archived Publications

No abstract provided.

Interaction Of The Human Serine Protease Inhibitor Alpha-1-Antitrypsin With Cryptosporidium Parvum, John Russell Forney

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The human serine protease inhibitor (serpin) alpha-1-antitrypsin (AAT) was studied for potential interaction with components of the protozoan parasite Cryptosporidium parvum. A homogenate prepared from C. parvum oocysts was incubated with purified human AAT, and complexes formed between the serpin and components of the homogenate were detected using an enzyme-linked immunosorbent assay (ELISA). Serpin:parasite infections were effectively blocked by preincubating AAT with a cognate target enzyme, porcine pancreatic elastase, prior to performing the ELISA on the homogenate. Incubation of a mixture of C. parvum oocysts and sporozoites with AAT demonstrated preferential fluorescence labeling of the sporozoite surface membrane by indirect …

Scanning Electron Microscopy Of Cyclosporine-Induced Gingival Overgrowth, Shahid H. Ashrafi, Krzysztof Slaski, Kyaw Thu, Eli S. Neiman, Michael P. Cunningham

Scanning Microscopy

Overgrown human gingival specimens were examined histologically and by scanning electron microscopy (SEM) to study structural changes caused by cyclosporine. The biopsy specimens were from organ transplant recipients receiving cyclosporine to suppress the rejection of the transplanted organ. The epithelium of the overgrown gingiva was thickened, acanthotic and parakeratotic. Retepegs were anastomosing and extending into connective tissue. The SEM examination of the outer surface of the attached gingival showed loss of cellular attachments and cells were exfoliating. The normal honeycomb structure formed by interconnecting microvilli surrounding the pits was distorted. Outer gingival cell surface showed numerous round, ovoid and dome-like …

The Effect Of Arf-Excimer Laser Irradiation Of The Human Enamel Surface On The Bond Strength Of Orthodontic Appliances, U. Stratmann, K. Schaarschmidt, M. Schürenberg, U. Ehmer

Scanning Microscopy

This study investigated enamel laser conditioning as an alternative to acid etching in bracket therapy. In preliminary experiments optimal laser parameters for achieving a bond strength of 6-10 N/mm² were defined. Enamel surface morphology was assessed and the ablation depth was measured on serial enamel sections. Thirty human molars were exposed to 193 nm ArF-excimer laser radiation (energy density: 260 mJ/cm²) by single pulse application of 23 nanoseconds. Thirty molars were etched with phosphoric acid (37%) for 60 seconds. The brackets from the treated molars and 30 untreated molars were debonded vertically for tensile bond strength measurement. …

Use Of Recombinant Human Granulocyte Colony Stimulating Factor As An Adjunct In Antifungal Chemotherapy In Various Animal Model Systems, Lindi Farrell

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The growing neutropenic patient population provides an ideal target for opportunistic fungal infections. Several effective antifungal drugs are toxic at high doses and contraindicated for long-term treatment. Recombinant human granulocyte colony stimulating factor (rhG-CSF) has been shown to increase neutrophilic numbers and functions, thus providing enhanced host defense. Improved efficacy by using rhG-CSF in conjunction with various antifungal agents was the primary focus of these studies. Use of rhG-CSF in a murine model of vaginal candidiasis did not reduce vaginal colony counts, or improve vaginal histophathology scores. Administration of rhG-CSF in a murine model of pulmonary aspergillosis improved survival, clinical …

An Experimental Scanning Electron Microscopic Study Of Human Cerebellar Cortex Using The T-Butyl Alcohol Freeze-Drying Device, Teruyuki Hojo

Scanning Microscopy

Specimen preparation methods are very important in scanning electron microscopy (SEM) of nerve tissues. In the present study, a t-butyl alcohol freeze-drying device was used to prepare cerebellar cortex of the human and that of the rat at 15°C and 160 mm Hg. This method has been previously used with success in the preparation of other tissues, such as pancreas and trachea. Relatively large specimens (about 10 mm x 15 mm x 1 mm) of formalin-fixed human and glutaraldehyde-Millonig buffer perfused (1 hour) Wistar rat were rinsed in water, dehydrated in a series of ethanols, immersed in t-butyl …

Rabbit And Human Non-Keratinising Stratified Squamous Oesophageal Epithelium Displays Similar Microridge Structure By Scanning Electron Microscopy, S. Shasha'a, G. R. Dickson, R. St. C. Gilmore, G. C. Crean, M. M. Butt, K. E. Carr

Scanning Microscopy

Since the oesophageal epithelium of common laboratory animals, rats and mice, is keratinized it is unsuitable for comparison with typical non-keratinized stratified squamous human epithelium. It is thus important to find a suitable animal model for the study of human oesophageal tissue changes. This study investigated the microridge structure of immature and adult rabbit specimens, and adult human biopsies by scanning electron microscopy and morphometry. The investigation revealed a similarity between typical squamous human and adult rabbit oesophageal mucosal epithelium. While human epithelium specimens subdivided into two other groups (non-typical squamous and non-squamous); all typical squamous human biopsies were from …

Comparative Aspects Of Splenic Microcirculatory Pathways In Mammals: The Region Bordering The White Pulp, E. E. Schmidt, I. C. Macdonald, A. C. Groom

Scanning Microscopy

Splenic microcorrosion casts prepared using minimal volumes of material show that most of the flow passes through the region bordering the white pulp. However, the nature of these microcirculatory pathways has received little attention. We have studied these in dog, cat, rat, mouse, and normal versus diseased human spleens. In all 5 species, a marginal sinus (MS) of anastomosing vascular spaces 5-10 μm thick lies between the white pulp and marginal zone (MZ). The morphology differs between species and the MS is absent in immune thrombocytopenia. The MS fills by circumferential flow before blood passes outward to the MZ. Many …

Scanning Electron Microscopy Of Styrene-Methylethylketone Casts Of The Airway And The Arterial System Of The Lung, Teruyuki Hojo

Scanning Microscopy

The method of making casts of airways and the pulmonary arterial system using a styrene polymer resin is described. A human and a dog were used as models. The viscosity of this resin ranges between 40 and 60 dPa/s at 24°C. The elastic rubber tube used for resin injection allows a constant perfusion pressure, i.e., 44 mm Hg and 110 mm Hg for airway and vascular filling, respectively. The casts obtained using this method are suitable both for macro- and microscopic analysis. Shrinkage during polymerization is minimal. Moreover, a preceding lavage is not necessary. Scanning electron microscopy (SEM) of cast …

Ultrastructural Features Of Human Reissner's Membrane, Anne De Fraissinette, Heidi Felix, Jannie Nievergelt, Michael Gleeson

Scanning Microscopy

Ultrastructural features of human Reissner' s membrane were investigated in two groups of similarly aged patients. Five patients had age-related normal hearing (ARNH) and four patients had acquired sensorineural hearing loss (SNHL) from causes other than age. The membrane consisted of a mesothelium facing the perilymph and an epithelium facing the endolymph. The two cell layers were separated by a basement membrane. The mesothelium was formed by wide spread thin cells with a smooth surface. The epithelial cells assumed two different shapes, flat and rounded. Both epithelial cell types were covered with many short microvilli. In all specimens, the rounded …

Microvasculature Of Normal And Hydropic Labyrinth, Yoshiaki Nakai, Haruhiko Masutani, Makoto Moriguchi, Kazuhiro Matsunaga, Akihumi Kato, Hitoshi Maeda

Scanning Microscopy

The microvasculature of the inner ear in guinea pigs and humans was observed with a scanning electron microscope using corrosion casting method. Alterations in the inner ear vasculature which occurred in association with experimental endolymphatic hydrops were also investigated. The results thus obtained are summarized as follows:

1. In the cochlea and vestibule, the arteries, coiled arterioles, and the veins are endowed with their respective characteristic morphologic features and play a role in the regulatory mechanisms of circulation.

2. The point in humans which is most different from guinea pigs was that coiled arterioles in the cochlea and the coil-like …

The Morphology Of Synovial Lining Of Various Structures In Several Species As Observed With Scanning Electron Microscopy, Peter J. Steinberg, Kees C. Hodde

Scanning Microscopy

Data concerning surface morphology of synovial lining of tendons, tendon sheaths, cruciate ligaments, infra-patellar fat pads and peripatellar synovial ridges in various species (rat, rabbit, dwarf goat, sheep, pig, dog, human) are reported on. Supportive studies with transmission electron microscopy (TEM) and light microscopy were performed.

Three principal morphological appearances of the synovium are evident. On structures with a dense fibrous architecture like tendons, tendon sheaths and cruciate ligaments the intimal cells and processes are mostly slender and may tend to orientation in the length-axis of the structure. On the peri- and infrapatellar adipose tissues two principal 'extremes' are seen: …

Healing Of Prosthetic Arterial Grafts, G. Pasquinelli, A. Freyrie, P. Preda, T. Curti, M. D'Addato, R. Laschi

Scanning Microscopy

Numerous synthetic biomaterials have been developed as vascular substitutes. In vitro, ex vivo and in vivo studies have demonstrated that in animals, selected materials, i.e., Dacron and ePTFE (expanded polytetrafluoroethylene) grafts, are successfully incorporated in both the large and the small caliber host arteries through a process which is generally referred to as graft healing. Morphologically, this process consists of a series of complex events including fibrin deposition and degradation, monocyte-macrophage recruitment and flow-oriented cell-layer generation, this last event being the complete endothelialization of the arterial substitute.

In contrast to experimental animals, the flow surface of synthetic vascular grafts remains …

X-Ray Microanalysis Of Dentin: A Review, E. Hals, A. B. Tveit, B. Tøtdal

Scanning Microscopy

The aim of this review was to present a condensed summary of the literature on X-ray microanalysis of dentin, including both energy-dispersive (EDS) and wavelength-dispersive (WDS) analysis. Estimations of concentrations by XMA of dentin should be regarded as semiquantitative values. The Ca level in rat odontoblasts was elevated in the secreting end of the cell body. In predentin Ca accumulated at a concentration of 2% that of mineralized dentin. In coronal dentin the peritubular areas were hypermineralized (Ca, P, Mg). Primary caries lesions showed a decrease of Ca, P, Mg and Cl, and usually an increase of S and Zn. …

Effects Of Exercise And Cheese Supplemented Diet On Cholesterol And Lipoprotein Fractions In Free-Living Young Human Subjects, Kathleen A. Gabel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ten young adults were divided into an exercising group (n = 6) and sedentary group (n = 4). Smoking, ingestion of alcohol, drugs and oral contraceptives were prohibited during 9 weeks of study. Diets were prepared by university food service. Food consumed was recorded and nutrient intakes were assessed. Cheese was consumed in 84 to 112 gram portions every day for two separate 14 day periods. All other dairy products were prohibited in the diet except 240 ml of two percent milk per day. When cheese was consumed, daily diets contained ca 400 kcal, 100 mg cholesterol, and 700 mg …

The Capillary Bed In The Choroid Plexus Of The Lateral Ventricles: A Study Of Luminal Casts, Enrico D. F. Motti, Hans-Georg Imhof, Robert C. Janzer, Klaus Marquardt, Gazi M. Yasargil

Scanning Electron Microscopy

Micro-angioarchitecture of the choroid plexus of the lateral ventricles is investigated in microcorrosion casts of animal and human preparations studied with the scanning electron microscope. The capillary bed in the diverse regions of the tissue belongs to one of three patterns: (1)-a network of capillary meshes that envelop the larger arteries and veins predominates in the central segment. (2)-in the villous regions a "leaf-like" organization of sinusoids is found together with (3)-fronds of "glomerular" formations. "Glomeruli" are formed when arterial afferents and venous efferents converge in a quasi hilar structure before branching in arterio-venous loops. Nodular thickenings are observed on …

Scanning Electron Microscopic Features Of Spleen In The Rat And Human: A Comparative Study, S. Sasou, R. Satodate, T. Masuda, K. Takayama

Scanning Electron Microscopy

The marginal zone, white pulp and red pulp of rat and human spleen were studied by scanning electron microscopy and were compared. The marginal zone was observed in both species. The arterial termination in the marginal zone was quite different between both species. The follicular arteries terminated at the boundary of the white pulp and formed a vascular net regarded as the marginal sinus in rat. On the other hand, numerous arterial termini of the follicular and sheathed arteries were scatteringly found in the marginal zone in man. The central artery was surrounded with flat reticular cells in rat and …

Survival And Growth Of Adult Human Oligodendrocytes In Culture: Scanning Electron Microscopy, Seung U. Kim, Kookmin M. Kim, Giuseppe Moretto, Doo H. Shin

Scanning Electron Microscopy

The oligodendrocytes in culture serve as an important model for the study of demyelination diseases. We have previously originated a method of isolating human oligodendrocytes. In order to establish their three dimensional morphology, scanning electron microscopy of the cultured oligodendrocytes was performed.

The oligodendrocytes bulk isolated from adult human brain were maintained in culture for more than 2 months. At the various periods in culture, the cells were studied by scanning electron microscopy and immunofluorescence staining using marker antibodies for the identification of oligodendrocytes. The three dimensional organization and the surface morphology of the cultured oligodendrocytes were investigated. They displayed …

The Growth Of Fetal Human Sensory Ganglion Neurons In Culture: A Scanning Electron Microscopic Study, Seung U. Kim, Kookmin M. Kim, Giuseppe Moretto, James H. Kim

Scanning Electron Microscopy

Sensory neurons of 8-week human fetal dorsal root ganglia were dissociated into single cells by trypsinization and cultured on coverslips for 4 months, in either serum-containing or serum-free chemically defined media. At different times the cultures were fixed and prepared for scanning electron microscopy. Fetal sensory neurons in culture regenerated axons within 24 hours which were characterized by axonal growth cones at their tips and the neuronal perikarya assumed spherical or a bonnet-like morphology.

Human-Bear Interactions In The Backcountry Of Yosemite National Park, Bruce Charles Hastings

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The objective of this study was to quantitatively document interactions between black bears and backcountry visitors, and to identify the factors affecting those encounters. Fine hundred and ninety-two interactions were observed. The most common responses of visitors to bears were to watch, walk toward, and talk to others and/or point at the bear. Bears responded to humans largely by walking away, watching, traveling around, walking toward, and running away from people.

Each behavior for both species was categorized into one of four response classes: (1) fear/avoidance, (2) neutrality, (3) approach, or (4) aggression. Over 65 percent of visitor responses were …

Ecological Relationships Of Accipiters In Northern Utah - With Special Emphasis On The Effects Of Human Disturbance, Stephen P. Hennessy

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this study was to examine the effect of habitat parameters and human disturbance on the nesting success of goshawks, Cooper's hawks, and sharp-shinned hawks in an area within the Cache National Forest of Utah and Idaho. This research should provide the wildlife manager with information of value in planning recreation areas, roads, timber cuttings, and other activities where impacts are considered.

Of the three accipiter species studied, the goshawk showed the greatest preference for isolation from man. It nested at higher elevations (X=2,065 m); farther from human disturbance (X=250 m); higher in trees …