Digital Commons Network^™

Lonomics Atlas: A Tool To Explore Interconnected Ionomic, Genomic And Environmental Data, Eduard Dragut, Amgad Madkour, Mohamed Nabeel, Peter Baker, Mourad Ouzzani, David Salt

Cyber Center Publications

Ionomics Atlas facilitates access, analysis and interpretation of an existing large-scale heterogeneous dataset consisting of ionomic (elemental composition of an organism), ge- netic (heritable changes in the DNA of an organism) and ge- ographic information (geographic location, altitude, climate, soil properties, etc). Ionomics Atlas allows connections to be made between the genetic regulation of the ionome of plant populations and their landscape distribution, allowing scientists to investigate the role of natural ionomic variation in adaptation of populations to varied environmental conditions in the landscape. The goal of the Ionomics Atlas is twofold: (1) to allow both novice and expert users …

Innovative Approach To Active Learning, John G. Graveel, George E. Van Scoyoc

IMPACT Presentations

Presentation on a course redesign and project plan given at the American Society of Agronomy Annual Meeting, Cincinnati, OH.

The Bench Scientist's Guide To Statistical Analysis Of Rna-Seq Data, Craig R. Yendrek, Elizabeth A. Ainsworth, Jyothi Thimmapuram

Cyber Center Publications

RNA sequencing (RNA-Seq) is emerging as a highly accurate method to quantify transcript abundance. However, analyses of the large data sets obtained by sequencing the entire transcriptome of organisms have generally been performed by bioinformatics specialists. Here we provide a step-by-step guide and outline a strategy using currently available statistical tools that results in a conservative list of differentially expressed genes. We also discuss potential sources of error in RNA-Seq analysis that could alter interpretation of global changes in gene expression.

Development Of Markets For Local Food Crop To Enhance Incomes And Improve Food Security For Smallholder Farmers In East Africa, Betty Bugusu

Changing World Conference

No abstract provided.

Optimizing Greenhouse Corn Production: How Can Two-Spotted Spider Mites Be Controlled?, Robert Eddy, Daniel T. Hahn

Purdue Methods for Corn Growth

This publication describes our experiences controlling mites while conducting experiments to optimize greenhouse corn production. Controlled studies were not conducted, but we recommend cultural practices of water spray-offs of leaf undersides and the stripping lower leaves as the crop ages. Also recommended are applications of beneficial insect Phytoseiulus persimilis at very high rates. The rates are an update of our previous publication. Photos of the pest and cultural practices are provided.

This document is one entry in a series of questions and answers originally posted to the Purdue University Department of Horticulture & Landscape Architecture’s Plant Growth Facility Web site …

Optimizing Greenhouse Corn Production: What Is The Best Pot Size?, Derek Gambrel, Robert Eddy, Daniel T. Hahn

Purdue Methods for Corn Growth

This publication describes studies conducted to determine best pot size for optimizing greenhouse corn production. We suggest a 2.2-gallon container without large drainage holes extending up the side of the pot. This represents an update of our previous recommendation of a smaller pot, after observing instability in row planting configurations. Photos are included of corn in various size pots.

This document is one entry in a series of questions and answers originally posted to the Purdue University Department of Horticulture & Landscape Architecture’s Plant Growth Facility Web site (http://www.hort.purdue.edu/hort/facilities/greenhouse/CornMethod.shtml) regarding best practices for corn plant growth in a greenhouse. Controlled …

Whole-Genome Resequencing Of Two Elite Sires For The Detection Of Haplotypes Under Selection In Dairy Cattle Supporting Information, Denis M. Larkin, Hans D. Daetwyler, Alvaro G. Hernandez, Chris L. Wright, Lorie A. Hetrick, Lisa Boucek, Sharon Bachman, Jyothi Thimmapuram

Cyber Center Publications

Using a combination of whole-genome resequencing and high-density genotyping arrays, genome-wide haplotypes were reconstructed for two of the most important bulls in the history of the dairy cattle industry, Pawnee Farm Arlinda Chief (“Chief”) and his son Walkway Chief Mark (“Mark”), each accounting for ∼7% of all current genomes. We aligned 20.5 Gbp (∼7.3× coverage) and 37.9 Gbp (∼13.5× coverage) of the Chief and Mark genomic sequences, respectively. More than 1.3 million high-quality SNPs were detected in Chief and Mark sequences. The genome-wide haplotypes inherited by Mark from Chief were reconstructed using ∼1 million informative SNPs. Comparison of a set …

Optimizing Greenhouse Corn Production: Summary, Robert Eddy, Daniel T. Hahn

Purdue Methods for Corn Growth

This publication provides a summary of the goals and scope of our studies to optimize greenhouse corn production, as well as a single-page chart of all the recommendations. The chart includes recommendations for substrate, container, irrigation, fertilization, spacing and lighting. In this version, we updated the pot size recommendation.

This document is one entry in a series of questions and answers originally posted to the Purdue University Department of Horticulture & Landscape Architecture’s Plant Growth Facility Web site (http://www.hort.purdue.edu/hort/facilities/greenhouse/CornMethod.shtml) regarding best practices for corn plant growth in a greenhouse. Controlled studies were conducted with the goals of optimizing growth and …

Sugar-Enhanced Sweet Corn Cultivar Evaluation For Northern Indiana, 2011, Elizabeth Maynard

Purdue Fruit and Vegetable Research Reports

Indiana growers harvested sweet corn for fresh market sales from 6,500 acres in 2010, with an average yield of 92 cwt/acre (219 crates or 4.6 tons per acre) and total value of $14.4 million (USDA NASS, 2011). Indiana ranks 13th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bicolor corn is most commonly grown. Varieties with improved eating quality are of interest to …

Supersweet Sweet Corn Cultivar Evaluation For Northern Indiana, 2011, Elizabeth Maynard

Purdue Fruit and Vegetable Research Reports

Indiana growers harvested sweet corn for fresh market sales from 6,500 acres in 2010, with an average yield of 92 cwt/acre (219 crates or 4.6 tons per acre) and total value of $14.4 million (USDA NASS, 2011). Indiana ranks 13th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bicolor corn is most commonly grown. Varieties with improved eating quality are of interest to …

Sugar-Enhanced Sweet Corn Cultivar Evaluation For Northern Indiana, 2011, Elizabeth Maynard

Midwest Vegetable Trial Reports

Indiana growers harvested sweet corn for fresh market sales from 6,500 acres in 2010, with an average yield of 92 cwt/acre (219 crates or 4.6 tons per acre) and total value of $14.4 million (USDA NASS, 2011). Indiana ranks 13th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bicolor corn is most commonly grown. Varieties with improved eating quality are of interest to …

Supersweet Sweet Corn Cultivar Evaluation For Northern Indiana, 2011, Elizabeth Maynard

Midwest Vegetable Trial Reports

Indiana growers harvested sweet corn for fresh market sales from 6,500 acres in 2010, with an average yield of 92 cwt/acre (219 crates or 4.6 tons per acre) and total value of $14.4 million (USDA NASS, 2011). Indiana ranks 13th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bicolor corn is most commonly grown. Varieties with improved eating quality are of interest to …

Artl@ S And Basart: A Loose Coupling Strategy For Digital Humanities, Sorin Matei

Cyber Center Publications

The core ARTL@S digital humanities
strategy is that of loosely coupling
resources, platforms, and use scenarios.
A number of sites will feed from
the same geodatabase (BasArt),
which will be enriched by users with
new content. Inspired by the Web 2.0
design principles, ARTL@S relies on
the BasArt API, which will enable an
ecosystem of sites to use primary
data to generate their own maps,
charts, and tables. A variety of economic
models will also be used to
support the site, from free to paybased.
User-generated content will be
monitored by data management and
curation techniques that will ensure
the …

Authenticated Top-K Aggregation In Distributed And Authenticated Top-K Aggregation In Distributed And, Sunoh Choi, Hyo-Sang Lim, Elisa Bertino

Cyber Center Publications

Top-k queries have attracted interest in many different areas like network and system monitoring, information retrieval, sensor networks, and so on. Since today many applications issue top-k queries on distributed and outsourced databases,
authentication of top-k query results becomes more important. This paper addresses the problem of authenticated top-k aggregation queries (e.g. “find the k objects with the highest aggregate values”) in a distributed system. We propose a new algorithm, called Authenticated Three Phase Uniform Threshold (A-TPUT), which provides not only efficient top-k aggregation over distributed databases but also authentication on the top-k results. We also introduce several enhancements for …