Digital Commons Network^™

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …

An Examination Of The Ways In Which Transdisciplinary Research Could Be Used To Incentivize Local Communities To Combat The Illegal Wildlife Trade, Jessica Rios

FIU Undergraduate Research Journal

The illegal wildlife trade (IWT) is currently one of the most critical conservation concerns, given its direct impact on biodiversity loss, endangering local ecosystems, and adding pressure to all species at a point when they face dangers like deforestation and mass extinctions. This industry also significantly impacts local communities, many of which are compelled to engage in it as a result of their precarious socioeconomic conditions. While effective countermeasures to this global issue have been identified, successful implementation of these countermeasures require diverse disciplines and collaborators. This paper argues that a transdisciplinary approach that converges knowledge and skills from social …

Mercury Biomagnification In Aquatic Food Webs Of Great Smoky Mountains National Park, Zachary Winston Clark

Masters Theses

Mercury is a widespread pollutant threatening human, fish, and ecosystem health on a global scale. Biomagnification concentrates mercury in upper trophic level organisms including predatory fishes, a primary route of dietary mercury exposure for humans. However, mercury biomagnification is not well understood in stream ecosystems, especially in places with no known point sources of contamination. A 2016 study revealed that Smallmouth Bass Micropterus dolomeiu mercury concentrations varied between three streams in Great Smoky Mountains National Park (GSMNP), Tennessee USA. However, the reason for this spatial variation in mercury concentrations is not understood. Our objectives were to (1) measure environmental and …

Evaluation Of Avian Use Of Agricultural Cover Crops During The Winter, Migration Stopover, And The Breeding Season In Tennessee, Brittany Panos

Masters Theses

The U.S. Department of Agriculture Natural Resources Conservation Service administers the cover crop program to provide technical and financial assistance to agricultural producers to sow herbaceous plant seeds to establish cover crops to protect agricultural fields from soil erosion during the non-growing season (late fall through spring). Soil retention and water quality benefits have been documented, but potential benefits for avian wildlife remain largely unknown. I used line-transect avian and vegetation surveys to examine use of cover crop fields by birds during the non-breeding period (winter), migration, and the breeding season. I compared avian use of cover crop fields with …

Comparison Of Ketamine-Xylazine, Butorphanol-Azaperone-Medetomidine, And Nalbuphine-Medetomidine-Azaperone For Raccoon (Procyon Lotor) Immobilization, Shylo R. Johnson, Christine K. Ellis, Chad Wickham, Molly R. Selleck, Amy T. Gilbert

USDA Wildlife Services: Staff Publications

Raccoons (Procyon lotor) are frequently handled using chemical immobilization in North America for management and research. In a controlled environment, we compared three drug combinations: ketamine-xylazine (KX), butorphanol-azaperone-medetomidine (BAM), and nalbuphinemedetomidine- azaperone (NalMed-A) for raccoon immobilization. In crossover comparisons, raccoons received a mean of the following: 8.66 mg/kg ketamine and 1.74 mg/kg xylazine (0.104 mL/kg KX); 0.464 mg/kg butorphanol, 0.155 mg/kg azaperone, and 0.185 mg/kg medetomidine (0.017 mL/kg BAM); and 0.800 mg/kg nalbuphine, 0.200 mg/kg azaperone, and 0.200 mg/kg medetomidine (0.020 mL/kg NalMed-A). Induction time was shortest with KX (mean6SE, 10.060.7 min) and longest with NalMed-A (13.061.3 min). …

Identifying Nutrient Dynamics And Relative Groundwater Contribution In Wetlands At Fish Lake Environmental Center, Lapeer Mi, Rose Allen

Senior Honors Theses and Projects

Wetlands are complex ecosystems that are dependent on hydrologic processes and water chemistry. Understanding the role that water chemistry and nutrients play in wetland ecosystems is crucial to wetland management and restoration. The Fish Lake Environmental Education Center near Lapeer Michigan, is glacially influenced, and contains a large bog. Between the bog and lake there are multiple kettles that contain ephemeral wetlands in the spring. Bogs are primarily precipitation sourced, whereas the kettle wetlands may be a combination of precipitation and groundwater sourced. Previous studies indicated that groundwater flow direction is towards Fish Lake, but it was unclear to what …

Dryland Vegetation Mapping Using High Spatial-Temporal Resolution Satellite Imagery In New Mexico: A Comparison Of Phenological Time-Series Transformation Methods, Pratistha Sharma

Geography ETDs

New Mexico's drylands are undergoing notable vegetation changes due to rising aridity, higher temperatures, and shifts in precipitation with changing climate. Mapping drylands through remote sensing is challenging compared to mesic systems due to the irregular patterns of rainfall-driven phenology and weaker vegetation absorption signals. This study aims to enhance vegetation mapping in New Mexico, utilizing a high-resolution, frequently revisited PlanetScope dataset with multispectral capabilities, specifically chosen for its suitability for time-series analysis. The challenge with high spatial and temporal data lies in the overwhelming volume, leading to issues like the curse of dimensionality, overfitting, data redundancy, collinearity, and visualization …

Tiny Drifters Amidst Global Change: Examining Environmental Drivers, Trophic Impacts, And Management Strategies Of Estuarine Plankton Communities In The Anthropocene, Taylor Nicole Dodrill

Dissertations and Theses

Plankton productivity supports estuarine food webs, and has been tied to the success of fisheries, macroinvertebrates, and cultured shellfish yields. Climate change and alterations to nutrient loads are thought to be influencing plankton assemblages, with toxin-producing harmful algal blooms (HABs) on the rise and nutritional quality of plankton declining globally. These shifts in plankton communities may contribute to low biomass yields and toxin-based closures of important fisheries. The objectives of this dissertation are to identify environmental drivers, trophic impacts, and management strategies to understand and respond to changing estuarine plankton communities. To address these objectives, I used a combination of …

Human Dimensions Of Woody Encroachment Management In Nebraska, Emily Rowen

School of Natural Resources: Dissertations, Theses, and Student Research

Woody plant encroachment (WPE) is a social-ecological problem that will challenge conservation professionals and agricultural producers to adapt their management strategies. This research first examined WPE from the perspective of individual conservation professionals through an online survey. Conservation professionals’ attitudes about adaptation to vegetation transitions, such as WPE, were of interest because these attitudes are one measure of how prepared this group is to respond to WPE. Hypothesized predictors of adaptation attitude were tested through linear regression modeling. These predictors included ecological change, observation of WPE, or risk perception. It was found that risk perception was the strongest predictor of …

In Situ Water Sensing Systems: Research On Advancements In Environmental Monitoring, Abigail Seibel

Honors Theses

In this work, two sensing systems were researched in order to improve in situ environmental monitoring. The first is a pH and Total Alkalinity sensor used to determine these characteristics of sea water. I explored the facets of this sensor over a 7-week internship with Dr. Ellen Briggs in her lab in summer of 2023. The second is a more holistic sensing system that reads temperature, turbidity, and pressure used for studying environmental characteristics of Alaskan bever ponds. Both systems were developed in close collaboration with scientists who are collecting data to better understand the impacts of climate change. Better …

Inundated Vegetation Response To Ongoing Restoration And Its Impacts On Fish Community Structure, Emmanuel J. May

All Graduate Theses and Dissertations, Fall 2023 to Present

Shallow lake ecosystems and their associated wetland habitats globally are subject to non-native species introductions, nutrient loading, and water level fluctuations, each of which can decrease vegetated habitat availability, exposing vulnerable native aquatic species to predation. Managers are frequently tasked with mitigating native species declines by restoring vegetation considered crucial for their survival. However, restoring vegetation can be challenging in the presence of multiple stressors, requiring managers to assess the relative importance of the different stressors limiting vegetation recovery.

Utah Lake is a large shallow lake subject to multiple stressors and has shifted from a mesotrophic lake with abundant aquatic …

The Effects Of The Big-Headed Turtle (Platysternon Megacephalum) On Community And Ecosystem In Hong Kong Hill Streams, Wing Lam Fok

Lingnan Theses and Dissertations (MPhil & PhD)

Freshwater turtles and tortoises are ecologically important organisms; however, they are underappreciated, and conservation attention often focuses on the more charismatic animals such as birds and mammals. Although turtles are the most traded group of animals and many species are at the brink of extinction, little research has been done to understand their ecology in Asia because of the rarity of wild populations. Hong Kong is a biodiversity hotspot for freshwater turtle species. The Big-headed Turtle (Platysternon megacephalum) is a critically endangered species that still maintains small populations in Hong Kong, providing a rare opportunity to study the …

The Influence Of Spatiotemporal Variation In Food Web Models, Cecilia E. Heuvel

Electronic Theses and Dissertations

Aquatic ecosystems are constantly adapting to fluxes in season, temperature, nutrient cycling, and prey availability. Consequently, aquatic food webs are dynamic, and relationships between species are perpetually changing as organisms and primary producer communities adapt to current environmental conditions both in time and space. Despite this knowledge however, many food web studies continue to use temporally static and spatially homogenous representations of food webs. This thesis proposes that a detailed investigation of temporal and spatial trends in a large lake ecosystem can improve our understanding of the mechanisms and drivers of spatial and temporal variation in food web structure and …

Analyzing Human - Nonhuman Primate Conflict Mitigation Techniques In Mto Wa Mbu, Northern Tanzania, Lily Adams

Independent Study Project (ISP) Collection

Human – non-human primate conflict is particularly crucial due to primates’ high capacity to live among human populations. The study to analyze Human - Nonhuman Primate Conflict Mitigation Techniques, was carried in November 2023 at Mto wa Mbu, Northern Tanzania. To analyze techniques currently being used to mitigate human – non-human primate conflict, this study collected data through semi-structured interviews. Over 87% (n=35) of respondents used multiple mitigation techniques simultaneously. 80% of respondents (n=32) reported using projectiles to ward off foraging primates, 75% of respondents (n=30) reported using loud noises (made either by the voice/body or by manipulating noisemakers), 67.5% …

Influence Of Lake Volume On Trophic Position, Carbon Use, And Resource Partitioning In Fish Across A Narrow Range Of Ecosystem Size, Alyssa Andersen

Electronic Theses and Dissertations

Lake size is an important factor governing seasonal variation in limnological phenomena, origin of nutrient sources, species interactions, cross-habitat linkages, and trophic pathways, all having complex influences on food web structure and function. Lake size effects are most clearly demonstrated across very wide gradients in surface area or volume. This approach incorporates several complicating and collinear elements such as changing fish assemblages and species richness, and therefore, incorporates additional but unaccounted shifts in food web structure and function. A comparison across a finer lake size gradient where fish assemblages and species richness change little or not at all is needed …

Establishing A Monitoring Framework To Evaluate Impacts Of Grazing Exclusion And Inform Restoration At Santa Rita Ranch, Annie Booth, Annie Booth

Master of Science in Environmental Sciences and Management Projects

Santa Rita Ranch is a 1,750-acre cattle ranch in Templeton, California, that was privately owned and continuously grazed for the past 70 years. In 2021, The Land Conservancy of San Luis Obispo (LCSLO) acquired the property, and in the winter of 2022, they built a fence that bisects the ranch, excluding the cattle from 800 acres to preserve the riparian habitat. The LCSLO is currently defining the ecological baseline for the ranch to inform future management decisions. Given that cattle grazing has many environmental tradeoffs, they wanted to establish a long-term monitoring study to understand how relieving the pressures of …

Drivers And Dynamics Of Phytoplankton Communities And Harmful Algal Blooms In Mountain Lakes, Lara Stephanie Jansen

Dissertations and Theses

Harmful cyanobacterial blooms (cyanoHABs) are a complex and widespread disturbance in freshwater water bodies, impacting water quality for wildlife and human populations. While cyanobacteria often bloom in warm lakes impacted by human development like agriculture, blooms are increasingly reported in cooler waters with limited development in the surrounding watershed. As much of cyanoHAB research has focused on lakes in highly developed watersheds, the understanding of factors leading to cyanobacteria dominance and blooms in the absence of major development remains limited. Mountain lakes can serve as ideal systems to study bloom-forming cyanobacteria in watersheds with minimal development. In addition, mountain lakes …

The Impacts Of Transfer Learning For Ungulate Recognition At Sevilleta National Wildlife Refuge, Michael Gurule

Geography ETDs

As camera traps have grown in popularity, their utilization has expanded to numerous fields, including wildlife research, conservation, and ecological studies. The information gathered using this equipment gives researchers a precise and comprehensive understanding about the activities of animals in their natural environments. For this type of data to be useful, camera trap images must be labeled so that the species in the images can be classified and counted. This has typically been done by teams of researchers and volunteers, and it can be said that the process is at best time-consuming. With recent developments in deep learning, the process …

Sulfur Cycling Connects Microbiomes And Biogeochemistry In Deep-Sea Hydrothermal Plumes, Zhichao Zhou, Patricia Q. Tran, Alyssa M. Adams, Kristopher Kieft, John A. Breier, Caroline S. Fortunato, Cody S. Sheik, Julie A. Huber, Meng Li, Gregory J. Dick, Karthik Anantharaman

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

In globally distributed deep-sea hydrothermal vent plumes, microbiomes are shaped by the redox energy landscapes created by reduced hydrothermal vent fluids mixing with oxidized seawater. Plumes can disperse over thousands of kilometers and their characteristics are determined by geochemical sources from vents, e.g., hydrothermal inputs, nutrients, and trace metals. However, the impacts of plume biogeochemistry on the oceans are poorly constrained due to a lack of integrated understanding of microbiomes, population genetics, and geochemistry. Here, we use microbial genomes to understand links between biogeography, evolution, and metabolic connectivity, and elucidate their impacts on biogeochemical cycling in the deep sea. Using …

Impact Of Forest Management On Ozark Big-Eared Bat (Corynorhinus Townsendii Ingens) Prey And Foraging Ecology, Gemma L. Marsh

ATU Theses and Dissertations 2021 - Present

Ozark big-eared bats (Corynorhinus townsendii ingens) are an endangered species of bat found only in Oklahoma and Arkansas. I conducted a study on the impact of forest management treatments, such as prescribed fire and mechanical thinning, in White Rock Mountain Wildlife Management Area, which is home to a maternity colony of Ozark big-eared bats. My goal was to understand how prescribed fire and mechanical thinning influence Ozark big-eared bat prey and foraging, and therefore be able to provide management recommendations for the habitat of this endangered species. My results indicated that bat prey availability was influenced by forest structure, …

The Association Between Drought Exposure And Respiratory-Related Mortality In The United States From 2000 To 2018, Yeongjin Gwon, Yuanyuan Ji, Jesse E. Bell, Azar M. Abadi, Jesse D. Berman, Austin Rau, Ronald D. Leeper, Jared Rennie

Daugherty Water for Food Global Institute: Faculty Publications

Climate change has brought increasing attention to the assessment of health risks associated with climate and extreme events. Drought is a complex climate phenomenon that has been increasing in frequency and severity both locally and globally due to climate change. However, the health risks of drought are often overlooked, especially in places such as the United States, as the pathways to health impacts are complex and indirect. This study aims to conduct a comprehensive assessment of the effects of monthly drought exposure on respiratory mortality for NOAA climate regions in the United States from 2000 to 2018. A two-stage model …

Fungi In Flux | Designing Regenerative Materials And Products With Mycelium, Arvind Bhallamudi

Masters Theses

As the world grapples with the escalating crisis of climate threats and environmental degradation, this research delves into the synergistic potential of design and biology, developing safe and sustainable materials for applications in prototyping, furniture and interior design. Harnessing the power of a unique organism - fungi, the study proposes an accessible, efficient, and resilient material resource system. It utilizes local waste streams and mycelium (the vegetative part of fungi) to grow functional structures. An experimental and small-scale protocol is modeled by testing bio-fabrication and bio-printing methods. The composites' performance qualities and characteristics are evaluated through mechanical testing and a …

Beyond Covid-19: Designing Inclusive Public Health Surveillance By Including Wastewater Monitoring, Rochelle H. Holm, Na'taki Osborne Jelks, Rebecca Schneider, Ted Smith

Faculty Scholarship

Wastewater-based epidemiology is a promising and expanding public health surveillance method. The current wastewater testing trajectory to monitor primarily at community wastewater treatment plants was necessitated by immediate needs of the pandemic. Going forward, specific consideration should be given to monitoring vulnerable and underserved communities to ensure inclusion and rapid response to public health threats. This is particularly important when clinical testing data are insufficient to characterize community virus levels and spread in specific locations. Now is a timely call to action for equitably protecting health in the United States, which can be guided with intentional and inclusive wastewater monitoring.

Sustainability Analysis: Large-Scale Desalination Implications For Coastal California, Elizabeth H. Whitford

Master's Projects and Capstones

In response to prolonged drought, desalination is gaining popularity as an alternative water production method for fresh water. However, water desalting technology poses concerns; the process is energy intensive, creates brine waste, and has the potential to damage sensitive coastal ecosystems. Significant research is available on the technological, economic, and energy efficiency aspects of desalination, while only a small percentage of the current literature focuses on environmental impacts. This research analyzes the desalination literature holistically in terms of both energy consumption and environmental impacts by conducting 1) a historical and current state review of the sector, 2) a technology analysis …

Evaluating The Ability Of Constructed Intertidal Eastern Oyster (Crassostrea Virginica) Reefs To Address Shoreline Erosion In South Carolina, Peter R. Kingsley-Smith, Andrew W. Tweel, Sharleen P. Johnson, Gary W. Sundin, Michael S. Hodges, Benjamin W. Stone, Gregory D. Sorg, Denise M. Sanger

Journal of South Carolina Water Resources

The application of nature-based solutions to address shoreline erosion and the loss of salt marsh in coastal South Carolina has centered around the creation of intertidal oyster (Crassostrea virginica) reefs that act as natural breakwaters. The installation of such living shoreline materials often results in a rapid accumulation of fine sediments, followed by wild oyster recruitment to suitable materials, and then more gradually the growth of salt marshes (primarily Spartina alterniflora). Leveraging more than two decades of oyster reef restoration and living shorelines research at the South Carolina Department of Natural Resources, this study quantitatively assessed performance rates for both …

Uncover The Underground : Distribution And Population Status Of Blind Snakes And Bogadek’S Burrowing Lizards, Man Ho Chan

Lingnan Theses and Dissertations (MPhil & PhD)

Globally, 28% of the reptiles are fossorial. Fossorial reptiles, which perform important ecological functions, such as being ecosystem engineers, top predators and bioindicators, are indispensable members of the soil ecosystem. However, the ecology of fossorial reptiles is relatively little known because of their cryptic behavior and rarity. In Hong Kong, there are four species of fossorial reptile, three of which are rare and of potential conservation concern. Among the four fossorial reptile species that occur in Hong Kong, Indotyphlops lazelli and Dibamus bogadeki, are endemic to Hong Kong and are globally threatened species. On the other hand, the distribution …

Characterizing Spatial Variability In Soil Co2 Fluxes In The Chihuahuan Desert Using Geostatistical Techniques, Viridiana Orona

Open Access Theses & Dissertations

Spatial variability in soil CO2 efflux across landscapes is an important feature of the â??Critical Zoneâ?? within dryland ecosystems. In dryland critical zones, resources are often distributed in patches or resource islands. Although this is particularly true in natural settings, the significance of spatial variability in CO2 efflux and its patterns also extends to dryland agriculture. In both irrigated and unirrigated systems, human management practices can significantly impact both organic and inorganic carbon cycling processes, highlighting the importance of studying CO2 efflux in these systems. We examined the spatial patterns of soil CO2 efflux and quantified the magnitude and scale …

Online Dashboards For Sars-Cov-2 Wastewater Data Need Standard Best Practices: An Environmental Health Communication Agenda, Colleen C. Naughton, Rochelle H. Holm, Nancy J. Lin, Brooklyn P. James, Ted Smith

Faculty Scholarship

The COVID-19 pandemic has highlighted the benefits of wastewater surveillance to supplement clinical data. Numerous online information dashboards have been rapidly, and typically independently, developed to communicate environmental surveillance data to public health officials and the public. In this study, we review dashboards presenting SARS-CoV-2 wastewater data and propose a path toward harmonization and improved risk communication. A list of 127 dashboards representing 27 countries was compiled. The variability was high and encompassed aspects including the graphics used for data presentation (e.g., line/bar graphs, maps, and tables), log versus linear scale, and 96 separate ways of labeling SARS-CoV-2 wastewater concentrations. …

Detection Of A Diverse Endophyte Assemblage Within Fungal Communities Associated With The Arundo Leaf Miner, Lasioptera Donacis (Diptera: Cecidomyiidae), Marie-Claude Bon, John A. Goolsby, Guy Mercadier, Fatiha Guermache, Javid Kashef, Massimo Cristofaro, Ann T. Vacek, Alan Kirk

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The larvae of Lasioptera donacis Coutin feed on fungal communities lining galleries within the mesophyll of leaf sheaths of Arundo donax in an aggregative manner. It has been stated that L. donacis could have established a fundamental symbiotic relationship with one fungus, although the fungal composition of these communities remains unsettled. Using a culture-dependent approach and ITS sequencing, the present work characterizes and compares the fungal communities associated with L. donacis in Eurasia with the endophytes of A. donax in Texas where L. donacis is absent. The 65 cultivable isolates obtained from L. donacis fungal communities were sorted into 15 …

Predicting Groundwater Spring Locations From Topographic And Climatic Data Using Maxent Modeling, Ayten Ece Koc

USF Tampa Graduate Theses and Dissertations

The World Resources Institute reveals that 17 countries face extremely high levels of water stress. Moreover, with increasing population and industrialization, the gap between water supply and demand increases day by day around the world. Groundwater is a key freshwater source, and springs are important resources as they enable to access groundwater. Therefore, it is crucial to monitor, protect, and manage groundwater springs. The first step in spring management is to recognize and define freshwater resources and to determine the locations of groundwater springs that serve as natural discharge points. Traditionally, field studies have been employed to determine the locations …