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Articles 1 - 7 of 7
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Theoretical And Quantitative Methods Connecting Characterizing Micoribal Metabolism Diversity: Implciations From Phylogenetics, Community Diversity, And Organic Geochemistry, Taylor Royalty
Doctoral Dissertations
Biogeochemistry is controlled by microorganisms obtaining nutrients and energy. Thus, microbial metabolisms directly link microbial ecology and geochemistry. The extent that microbial ecology and geochemistry microbial ecology and geochemistry affects the other requires constraint on the spatiotemporal distribution and abundance of microbial metabolisms with respect to geochemistry, or the microbial niches. Elucidating microbial metabolisms was challenging prior to the advent of ‘omics sequencing technologies, as most microbial lineages lack cultured representatives. Although revolutionizing microbial ecology, challenges still exist in fully leveraging information derived from ‘omics technologies. This dissertation attempts to address a small subset of these challenges that include quantifying …
The Effects Of Anthropogenic Stress On Nitrogen-Cycling Microbial Communities In Temperate And Tropical Soils, George S. Hamaoui Jr.
The Effects Of Anthropogenic Stress On Nitrogen-Cycling Microbial Communities In Temperate And Tropical Soils, George S. Hamaoui Jr.
Doctoral Dissertations
In this dissertation several research studies are discussed that characterize the effects of anthropogenic, or human-induced, stress on both ammonia-oxidizing and total bacterial soil microbial communities. The disturbances of land-use change in tropical, South American rainforests and artificial warming and nitrogen (N) fertilization in temperate, North American forests were investigated as these disturbances represent past and current disturbances caused by human landscape alteration and climate change. Initially, the response of soil ammonia-oxidizing microbial communities to land-use change from primary rainforest to pasture and, finally, back to secondary forest was determined. Next, these analyses of land-use change effects were expanded to …
Bacterial Diversity And Function Within An Epigenic Cave System And Implications For Other Limestone Cave Systems, Kathleen Merritt Brannen-Donnelly
Bacterial Diversity And Function Within An Epigenic Cave System And Implications For Other Limestone Cave Systems, Kathleen Merritt Brannen-Donnelly
Doctoral Dissertations
There are approximately 48,000 known cave systems in the United States of America, with caves formed in carbonate karst terrains being the most common. Epigenic systems develop from the downward flow of meteoric water through carbonate bedrock and the solutional enlargement of interconnected subsurface conduits. Despite carbonate karst aquifers being globally extensive and important drinking water sources, microbial diversity and function are poorly understood compared to other Earth environments. After several decades of research, studies have shown that microorganisms in caves affect water quality, rates of carbonate dissolution and precipitation, and ecosystem nutrition through organic matter cycling. However, limited prior …
Systems Biology Of Microcystis Blooms, Morgan Michelle Steffen
Systems Biology Of Microcystis Blooms, Morgan Michelle Steffen
Doctoral Dissertations
Cyanobacterial harmful algal blooms (cHABs) degrade freshwater lakes worldwide. Accumulation of nuisance biomass and production of noxious secondary metabolites can result in an expansive impact on both lake ecology and the surrounding communities. The cHAB forming organism Microcystis aeruginosa is known to produce the toxin microcystin, a compound nicknamed “fast death factor,” which has been implicated in animal poisonings and human liver failure and cancers. M. aeruginosa inhabits a wide range of freshwater lakes around the world, such as Lake Erie (USA/Canada) and Lake Tai (Taihu, China), and is often a dominant member of bloom communities. Such systems are well-studied …
Wood Decomposition In A Warmer World, Emily Elizabeth Austin
Wood Decomposition In A Warmer World, Emily Elizabeth Austin
Doctoral Dissertations
Climatic warming is altering species distributions and ecosystem functions across the globe. Wood is an important carbon pool and the fungal communities in wood are relatively simple compared to those in soil. These factors make decomposing wood an ideal system for exploring the influence of decomposer community on the response of decomposition to warming. My research has focused on the effects of warming wood decomposition rates and wood decomposing communities. Using field and lab- based manipulative experiments and field observations I explore the influence of tree species, wood decomposition stage, geography and warming on fungal community structure and activity. In …
Validating Approaches For Studying Microbial Diversity To Characterize Communities From Roots Of Populus Deltoides, Migun Shakya
Validating Approaches For Studying Microbial Diversity To Characterize Communities From Roots Of Populus Deltoides, Migun Shakya
Doctoral Dissertations
Microbial (archaeal, bacterial, and fungal) communities associated with plant roots are central to its health, survival, and growth. However, a robust understanding of root microbiota and the factors that govern their community structure and dynamics have remained elusive, especially in mature perennial plants from natural settings. Although the advent of Next Generation Sequencing (NGS) technologies have changed the scale of microbial ecological studies by enabling exhaustive characterization of microbial communities, the accuracy of taxonomic and quantitative inferences are affected by multiple experimental and computational steps and lack of knowledge of the true ecological diversity. To test for inaccuracies and biases, …
Biogeography And Genetic Diversity Of Toxin Producing Cyanobacteria In A Laurentian Great Lake, Johanna Maaria Rinta-Kanto
Biogeography And Genetic Diversity Of Toxin Producing Cyanobacteria In A Laurentian Great Lake, Johanna Maaria Rinta-Kanto
Doctoral Dissertations
The North American Great Lakes are a vital source on a global scale, as they hold ~18 % of the potable water resources on our planet. Cyanobacteria of the genus Microcystis are commonly found in fresh water environments around the world, and since the mid-1990s also in Lake Erie. The reasons for the success for these potentially toxic cyanobacteria in Lake Erie are not completely understood. In this study we have applied modern molecular tools to analyze field samples to provide an insight into the genotypic composition and diversity of the Microcystis community in the past and present day Lake …