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3d Computer Modeling Offers New Insights Into Diatom Ecology, Joseph Mohan Aug 2022

3d Computer Modeling Offers New Insights Into Diatom Ecology, Joseph Mohan

Electronic Theses and Dissertations

Algae supply over half of the Earth’s global primary production and form the base of almost all aquatic food networks. Thus, changes in algal productivity or composition will induce profound shifts in many ecosystems. This research is guided by two questions. Herein I ask if 3D models of algae can be created accurately enough to use for research applications? If they can be accurately created, then how can these models be used to advance our understanding of functional trait evolution and paleoecology? Herein, I develop 3D computer models for estimating the volume of individual algae and their parts. I also …


Loggerhead Shrike Detectability And Occurrence In Coastal South Carolina Urban Areas, Michelle Krauser May 2022

Loggerhead Shrike Detectability And Occurrence In Coastal South Carolina Urban Areas, Michelle Krauser

Electronic Theses and Dissertations

Grassland birds, such as the loggerhead shrike (Lanius ludovicianus), are threatened by extensive land-use change, including urbanization. Loggerhead shrikes have been declining since the early 1900s and are rare or extirpated in portions of their former range. Obtaining reliable population estimates of loggerhead shrikes is important to identify demographic trends and ensure conservation decisions are based on an accurate assessment of their current status. Imperfect detection, or the inability to detect every shrike during a survey, can result in biased population estimates. Estimating detection probability is labor-intensive and requires assumptions that are difficult to satisfy in most field studies. Understanding …


A Review Of Current Methods In Avian Dietary Analysis And Their Integrated Application To Characterize The Trophic Niche Of Louisiana Waterthrush (Parkesia Motacilla)., Brandon Hoenig May 2022

A Review Of Current Methods In Avian Dietary Analysis And Their Integrated Application To Characterize The Trophic Niche Of Louisiana Waterthrush (Parkesia Motacilla)., Brandon Hoenig

Electronic Theses and Dissertations

Characterizing a species’ dietary composition presents an avenue to understand many facets of its ecological niche and can provide essential information for the species’ long-term conservation. To date, the vast majority of diet studies have relied on direct identification of prey during foraging observations or from diet samples to characterize the dietary habits of birds. However, advancements in laboratory-based approaches have revolutionized the field of trophic ecology by allowing researchers to indirectly infer dietary habits with higher resolution across greater time scales. Here, I apply two of these laboratory-based techniques, namely DNA metabarcoding and stable isotope analysis, to characterize the …


Detection, Occupancy, Abundance, And Mercury Accumulation Of The Alligator Snapping Turtle (Macrochelys Temminckii) In Texas, David Rosenbaum May 2022

Detection, Occupancy, Abundance, And Mercury Accumulation Of The Alligator Snapping Turtle (Macrochelys Temminckii) In Texas, David Rosenbaum

Electronic Theses and Dissertations

Land use practices and physical alterations of ecosystems result in habitat loss and fragmentation, while chemical alterations, such as pollutant input, reduce habitat quality and health of exposed organisms. Here, I investigated the effects of watershed- and local-scale environmental variables on the occupancy, abundance, and mercury accumulation of a threatened aquatic species (Macrochelys temminckii, i.e., alligator snapping turtle) within the southwestern periphery of its distribution. Hierarchical modeling suggested the distribution of the species is more affected by watershed-scale land-cover than local habitat, and provided a baseline estimate of average species abundance across its range in eastern Texas. Abundance …


Detection And Occurrence Of Nerodia Harteri (Serpentes: Colubridae) In An Upper Portion Of The Brazos River Watershed, Jessica Yates May 2022

Detection And Occurrence Of Nerodia Harteri (Serpentes: Colubridae) In An Upper Portion Of The Brazos River Watershed, Jessica Yates

Electronic Theses and Dissertations

Semiaquatic snakes are disproportionately impacted by habitat alteration adjacent to wetlands because of their reliance on both terrestrial and aquatic habitats. Brazos River Watersnakes, Nerodia harteri, are endemic natricines with one of the most restricted geographic ranges in North America. I quantified detection and site occupancy probabilities of N. harteri and its sympatric congeners (N. erythrogaster and N. rhombifer), as well as microhabitat selection within the Nerodia community. Within occupied transects, search effort was positively correlated with detecting N. harteri, whereas environmental and/or habitat variables were better predictors for detecting the sympatric congeners. Microhabitat selection between …


Using Genetic Approaches To Study Local Adaptation And Reproductive Success In Snow Buntings (Plectrophenax Nivalis), Keta K. Patel Feb 2022

Using Genetic Approaches To Study Local Adaptation And Reproductive Success In Snow Buntings (Plectrophenax Nivalis), Keta K. Patel

Electronic Theses and Dissertations

Genetic analyses can facilitate effective and timely conservation and management actions. Arctic-migratory species in particular are in need of conservation genetic insights as they are experiencing substantial population pressures due to the impact of climate change (and other anthropogenic effects) on processes that affect their survival and reproduction. Therefore, identification of genetic mechanisms driving population divergence and variation in reproductive fitness in such species is critical. The goal of this thesis is to examine reproductive isolation among breeding populations of an Arctic-migratory passerine, the snow bunting (Plectrophenax nivalis) and determine factors that drive local adaptation and variation in …


Applying Conservation Genomic Techniques To Guide Management Of The Reticulated Flatwoods Salamander (Ambystoma Bishopi), Miranda Gaupp Jan 2022

Applying Conservation Genomic Techniques To Guide Management Of The Reticulated Flatwoods Salamander (Ambystoma Bishopi), Miranda Gaupp

Electronic Theses and Dissertations

The Reticulated flatwoods salamander (Ambystoma bishopi) is a federally endangered amphibian endemic to the longleaf-pine ecosystem of the southeastern U.S. This study used analyses of single-nucleotide polymorphism (SNP) data, collected from 2,255 unique individuals across 5 breeding seasons, spread across the known extant range of A. bishopi, to characterize the genetic diversity and demographics of populations, genetic relationships among populations, and patterns and spatial extents of gene flow, and to evaluate potential effects of management on A. bishopi’s resiliency. Population structure was strongly hierarchical, with individual breeding ponds (n = 38) acting as semi-connected subpopulations …


Effects Of Unpaved Roads On Relative Abundance And Epigenetics Of Early Successional Lizards, David Tevs Jan 2022

Effects Of Unpaved Roads On Relative Abundance And Epigenetics Of Early Successional Lizards, David Tevs

Electronic Theses and Dissertations

Unpaved roads may provide uniform microhabitat characteristics and impart edge effects in the adjacent landscape that mediate environmental pressures acting on small vertebrates. These features may allow species that are associated with recent disturbance to persist in aging forest patches. Further, epigenetic mechanisms such as DNA methylation may provide these species the phenotypic plasticity necessary to occupy multiple habitats with different environmental conditions. To understand how small vertebrates use unpaved roads, the relative abundance and occurrence of Florida scrub lizards (Sceloporus woodi) and six-lined racerunners (Aspidoscelis sexlineata) were quantified using visual encounter surveys along unpaved roads …