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Phylogenetic Reconstruction Analysis On Gene Order And Copy Number Variation, Ruofan Xia
Phylogenetic Reconstruction Analysis On Gene Order And Copy Number Variation, Ruofan Xia
Theses and Dissertations
Genome rearrangement is known as one of the main evolutionary mechanisms on the genomic level. Phylogenetic analysis based on rearrangement played a crucial role in biological research in the past decades, especially with the increasing avail- ability of fully sequenced genomes. In general, phylogenetic analysis aims to solve two problems: Small Parsimony Problem (SPP) and Big Parsimony Problem (BPP). Maximum parsimony is a popular approach for SPP and BPP which relies on itera- tively solving a NP-hard problem, the median problem. As a result, current median solvers and phylogenetic inference methods based on the median problem all face se- rious …
An Instruction Embedding Model For Binary Code Analysis, Kimberly Michelle Redmond
An Instruction Embedding Model For Binary Code Analysis, Kimberly Michelle Redmond
Theses and Dissertations
Binary code analysis is important for understanding programs without access to the original source code, which is common with proprietary software. Analyzing binaries can be challenging given their high variability: due to growth in tech manufactur- ers, source code is now frequently compiled for multiple instruction set architectures (ISAs); however, there is no formal dictionary that translates between their assem- bly languages. The difficulty of analysis is further compounded by different compiler optimizations and obfuscated malware signatures. Such minutiae means that some vulnerabilities may only be detectable on a fine-grained level. Recent strides in ma- chine learning—particularly in Natural Language …
Analysis Of Artificial Neural Networks In The Diagnosing Of Breast Cancer Using Fine Needle Aspirates, Janette Vazquez
Analysis Of Artificial Neural Networks In The Diagnosing Of Breast Cancer Using Fine Needle Aspirates, Janette Vazquez
Theses and Dissertations
This thesis examines how Artificial Neural Networks can be used to classify a set of samples from a fine needle aspirate dataset. The dataset is composed of various different attributes, each of which are used to come to the conclusion as to whether a sample is benign or malignant. To automate the process of analyzing the various attributes and coming to a correct prediction, a neural network was implemented. First, a Feedforward Neural Network was trained with the dataset using a Backpropagation training method and an activation sigmoid function with one hidden layer in the architecture of the network. After …
On-The-Fly Dynamic Dead Variable Analysis, Joel P. Self
On-The-Fly Dynamic Dead Variable Analysis, Joel P. Self
Theses and Dissertations
State explosion in model checking continues to be the primary obstacle to widespread use of software model checking. The large input ranges of variables used in software is the main cause of state explosion. As software grows in size and complexity the problem only becomes worse. As such, model checking research into data abstraction as a way of mitigating state explosion has become more and more important. Data abstractions aim to reduce the effect of large input ranges. This work focuses on a static program analysis technique called dead variable analysis. The goal of dead variable analysis is to discover …