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Articles 1 - 18 of 18
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Changes In Biotic And Abiotic Processes Following Mangrove Clearing, Elise Granek, Benjamin I. Ruttenberg
Changes In Biotic And Abiotic Processes Following Mangrove Clearing, Elise Granek, Benjamin I. Ruttenberg
Biological Sciences
Mangrove forests, important tropical coastal habitats, are in decline worldwide primarily due to removal by humans. Changes to mangrove systems can alter ecosystem properties through direct effects on abiotic factors such as temperature, light and nutrient supply or through changes in biotic factors such as primary productivity or species composition. Despite the importance of mangroves as transitional habitats between land and sea, little research has examined changes that occur when they are cleared. We examined changes in a number of biotic and abiotic factors following the anthropogenic removal of red mangroves (Rhizophora mangle) in the Panamanian Caribbean, including …
Recruitment Of Coastal Fishes And Oceanographic Variability In Central California, J. R. Wilson, B. R. Broitman, J. E. Caselle, D. E. Wendt
Recruitment Of Coastal Fishes And Oceanographic Variability In Central California, J. R. Wilson, B. R. Broitman, J. E. Caselle, D. E. Wendt
Biological Sciences
Recruitment of pelagic larval fishes to the nearshore environment is dependent on a suite of biological and physical processes operating at many spatial and temporal scales. Nearshore circulation processes associated with coastal upwelling are widely upheld as major determinants of year class strength for many rockfishes (Sebastes spp.), but the mechanism by which these processes drive recruitment is largely unknown. We used Standard Monitoring Units for the Recruitment of Fishes (SMURFs) to monitor recruitment of two rockfish complexes (Sebastes spp.) and cabezon (Scorpaenichthys marmoratus) from March to September of 2004 and 2005 at 3 sites along …
Breakdown And Invertebrate Colonization Of Dead Wood In Wetland, Upland, And River Habitats, Amy Braccia, Darold P. Batzer
Breakdown And Invertebrate Colonization Of Dead Wood In Wetland, Upland, And River Habitats, Amy Braccia, Darold P. Batzer
Biological Sciences Faculty and Staff Research
Breakdown of woody debris in river and upland habitats as well as the interactions between wood and invertebrates have been well described. Studies of wood in wetlands are rare, and far less is known about breakdown and invertebrate use of wood in these transitional habitats. This study experimentally assessed breakdown and invertebrate colonization of wood in a floodplain wetland and directly related patterns in the wetland to adjacent river and upland habitats. Over a 2.7 year period, we monitored breakdown and invertebrate presence in 10 cm diameter × 150 cm long sweetgum (Liquidambar styraciflua L.) logs in a floodplain wetland …
Limited Native Plant Regeneration In Novel, Exotic-Dominated Forests On Hawai’I, Joseph Mascaro, Kristen K. Becklund, R. Flint Hughes, Stefan A. Schnitzer
Limited Native Plant Regeneration In Novel, Exotic-Dominated Forests On Hawai’I, Joseph Mascaro, Kristen K. Becklund, R. Flint Hughes, Stefan A. Schnitzer
Biological Sciences Faculty Research and Publications
Ecological invasions are a major driver of global environmental change. When invasions are frequent and prolonged, exotic species can become dominant and ultimately create novel ecosystem types. These ecosystems are now widespread globally. Recent evidence from Puerto Rico suggests that exotic-dominated forests can provide suitable regeneration sites for native species and promote native species abundance, but this pattern has been little explored elsewhere. We surveyed 46 sites in Hawai’i to determine whether native species occurred in the understories of exotic-dominated forests. Native trees smaller than 10 cm in diameter were absent in 28 of the 46 sites and rare in …
Rules Of Engagement: Interspecies Interactions That Regulate Microbial Communities, Ainslie Little, Courtney Robinson, S Peterson, Kenneth Raffa, Jo Handelsman
Rules Of Engagement: Interspecies Interactions That Regulate Microbial Communities, Ainslie Little, Courtney Robinson, S Peterson, Kenneth Raffa, Jo Handelsman
Department of Biology Faculty Publications
Microbial communities comprise an interwoven matrix of biological diversity modified by physical and chemical variation over space and time. Although these communities are the major drivers of biosphere processes, relatively little is known about their structure and function, and predictive modeling is limited by a dearth of comprehensive ecological principles that describe microbial community processes. Here we discuss working definitions of central ecological terms that have been used in various fashions in microbial ecology, provide a framework by focusing on different types of interactions within communities, review the status of the interface between evolutionary and ecological study, and highlight important …
Life On The Edge: Morphological And Behavioral Adaptations For Survival On Wave-Swept Shores, Luke P. Miller
Life On The Edge: Morphological And Behavioral Adaptations For Survival On Wave-Swept Shores, Luke P. Miller
Faculty Publications, Biological Sciences
Wave-swept rocky shores serve as a home to a great diversity of organisms and are some of the most biologically productive habitats on earth. This burgeoning community exists in spite of the fact that the zone between the high and low tide marks can be one of the most physically harsh environments on earth. Large forces imposed by breaking waves and wide swings in temperature require the organisms living on rocky shores to adapt to a constantly changing environment or risk extirpation by physical forces. I have explored a number of hypothesized adaptations for survival on rocky shores and discuss …
Oligonucleotide Primers For The Detection Of Bioluminescent Dinoflagellates Reveal Novel Luciferase Sequences And Information On The Molecular Evolution Of This Gene, Andrea Baker, Ian Robbins, Mark A. Moline, Maria Debora Iglesias-Rodriguez
Oligonucleotide Primers For The Detection Of Bioluminescent Dinoflagellates Reveal Novel Luciferase Sequences And Information On The Molecular Evolution Of This Gene, Andrea Baker, Ian Robbins, Mark A. Moline, Maria Debora Iglesias-Rodriguez
Biological Sciences
Bioluminescence is reported in members of 18 dinoflagellate genera. Species of dinoflagellates are known to have different bioluminescent signatures, making it difficult to assess the presence of particular species in the water column using optical tools, particularly when bioluminescent populations are in nonbloom conditions. A "universal" oligonucleotide primer set, along with species and genus-specific primers specific to the luciferase gene were developed for the detection of bioluminescent dinoflagellates. These primers amplified luciferase sequences from bioluminescent dinoflagellate cultures and from environmental samples containing bioluminescent dinoflagellate populations. Novel luciferase sequences were obtained for strains of Alexandrium cf. catenella (Whedon et Kof.) Balech …
Sex‐Specific Variability In The Immune System Across Life‐History Stages., Oliver P. Love, Katrina G. Salvante, James Dale, Tony D. Williams
Sex‐Specific Variability In The Immune System Across Life‐History Stages., Oliver P. Love, Katrina G. Salvante, James Dale, Tony D. Williams
Biological Sciences Publications
Organisms theoretically manage their immune systems optimally across their life spans to maximize fitness. However, we lack information on (1) how the immune system is managed across life‐history stages, (2) whether the sexes manage immunity differentially, and (3) whether immunity is repeatable within an individual. We present a within‐individual, repeated‐measures experiment examining life‐history stage variation in the inflammatory immune response in the zebra finch (Taeniopygia guttata). In juveniles, age‐dependent variation in immune response differed in a sex‐ and context‐specific manner, resulting in no repeatability across stages. In adults, females displayed little stage‐dependent variation in immune response when laying while receiving …
Spatial And Temporal Approaches In Analyzine Recreational Groundfish Data From Southern Central California And Their Application Toward Marine Protected Areas, Steven J. Rienecke, John S. Stephens Jr., Royden Nakamura, Erin Nakada, Dean E. Wendt
Spatial And Temporal Approaches In Analyzine Recreational Groundfish Data From Southern Central California And Their Application Toward Marine Protected Areas, Steven J. Rienecke, John S. Stephens Jr., Royden Nakamura, Erin Nakada, Dean E. Wendt
Biological Sciences
Many nearshore rockfish species have small homerange sizes and therefore may be affected by heavier localized fishing in nearport areas. For this study we examined longterm trends in rockfish and lingcod landings from the commercial passenger fishing vessel (CPFV) fishery along the south central coast (SCC) of California using data from two sources: California Department of Fish and Game (CDFG) surveys from 1988–98 and California Polytechnic State University (Cal Poly) surveys in 2003–04. The objective was to make comparisons between areas close to port (that receive greater fishing effort) and those far from port (areas receiving less fishing effort). We …
An Automated Temperature-Based Option For Estimating Surface Activity And Refuge Use Patterns In Free-Ranging Animals, J R. Davis, E N. Taylor, D F. Denardo
An Automated Temperature-Based Option For Estimating Surface Activity And Refuge Use Patterns In Free-Ranging Animals, J R. Davis, E N. Taylor, D F. Denardo
Biological Sciences
Accurately assessing free-ranging animals’ patterns of surface activity and refuge use is critical, yet fundamentally challenging for biologists and wildlife managers. We evaluate the accuracy of an automated technique—temperature-based activity estimation (TBAE)—in estimating surface activity and refuge use patterns of two sympatric reptiles, the western diamond-backed rattlesnake (Crotalus atrox) and the Gila monster (Heloderma suspectum) in the Sonoran Desert. TBAE derived from a comparison of body temperature to shaded air temperature was effective in estimating the overall percent surface activity for both rattlesnakes (observed surface activity 51.8%, TBAE estimated surface activity 48.2%) and Gila monsters (observed …
Effects Of Population Size And Density On Pollinator Visitation, Pollinator Behavior, And Pollen Tube Abundance In Lupinus Perennis, Christopher E. Bernhardt, Randall J. Mitchell, Helen J. Michaels
Effects Of Population Size And Density On Pollinator Visitation, Pollinator Behavior, And Pollen Tube Abundance In Lupinus Perennis, Christopher E. Bernhardt, Randall J. Mitchell, Helen J. Michaels
Biology Faculty Research
Both the number and the density of flowering plants in a population can be important determinants of pollinator abundance and behavior. We report the joint effects of population size and density on pollinator visitation and pollination success for Lupinus perennis (Fabaceae). Focusing on five pairs of populations, we matched one small population (125-800 flowering plants) with one distinctly larger population (1000-3000 flowering plants). In these pairs, population size did not affect pollinator communities or pollination success. All measures of pollination success increased significantly with density. Only bee behavior (number of flowers probed per inflorescence) exhibited a significant interaction of size …
Perspectives In Ornithology: Application Of Tracking And Data-Logging Technology In Research And Conservation Of Seabirds, A E. Burger, Scott A. Shaffer
Perspectives In Ornithology: Application Of Tracking And Data-Logging Technology In Research And Conservation Of Seabirds, A E. Burger, Scott A. Shaffer
Faculty Publications, Biological Sciences
No abstract provided.
Population Ecology Of The Golden Mouse, Robert K. Rose
Population Ecology Of The Golden Mouse, Robert K. Rose
Biological Sciences Faculty Publications
An understanding of the population dynamics of a species requires knowledge of the major life-history parameters of a population, including age at maturity, distribution of age classes, and lifetime reproductive contribution of the sexes, sex ratio, length of the breeding season, mean litter size, rates of growth and survival, and life span. Because few long-term studies have been conducted with Ochrotomys nuttalli as the focal species of investigation, only fragmentary information is available for many population parameters. As importantly, densities of golden mice often are low, making them difficult to evaluate statistically. Little has been published on age at maturity …
New And Current Microbiological Tools For Ecosystem Ecologists: Towards A Goal Of Linking Structure And Function, Rebecca E. Drenovsky, Kevin P. Ferris, Katharine M. Batten, Krassimira Hristova
New And Current Microbiological Tools For Ecosystem Ecologists: Towards A Goal Of Linking Structure And Function, Rebecca E. Drenovsky, Kevin P. Ferris, Katharine M. Batten, Krassimira Hristova
Biology
Interest in the relationships between soil microbial communities and ecosystem functions is growing with increasing recognition of the key roles microorganisms play in a variety of ecosystems. With a wealth of microbial methods now available, selecting the most appropriate method can be daunting, especially to those new to the field of microbial ecology. In this review, we highlight those methods currently used and most applicable to ecological studies, including assays to study various aspects of the carbon and nitrogen cycles (e.g., pool dilution, acetylene reduction, enzyme analyses, among others), methods to assess microbial community composition (e.g., phospholipid fatty acid analysis …
Ecological Genomics: Understanding Gene And Genome Function In The Natural Environment, M. C. Ungerer, L. C. Johnson, M. A. Herman
Ecological Genomics: Understanding Gene And Genome Function In The Natural Environment, M. C. Ungerer, L. C. Johnson, M. A. Herman
School of Biological Sciences: Faculty Publications
The field of ecological genomics seeks to understand the genetic mechanisms underlying responses of organisms to their natural environments. This is being achieved through the application of functional genomic approaches to identify and characterize genes with ecological and evolutionary relevance. By its very nature, ecological genomics is an interdisciplinary field. In this review, we consider the significance of this new area of study from both an ecological and genomic perspective using examples from the recent literature. We submit that by considering more fully an ecological context, researchers may gain additional insights into the underlying genetic basis of ecologically relevant phenotypic …
On Estimating The Exponent Of Power-Law Frequency Distributions, Ethan P. White, B. J. Enquist, J. L. Green
On Estimating The Exponent Of Power-Law Frequency Distributions, Ethan P. White, B. J. Enquist, J. L. Green
Biology Faculty Publications
Power-law frequency distributions characterize a wide array of natural phenomena. In ecology, biology, and many physical and social sciences, the exponents of these power-laws are estimated to draw inference about the processes underlying the phenomenon, to test theoretical models, and to scale up from local observations to global patterns. Therefore, it is essential that these exponents be estimated accurately. Unfortunately, the binning-based methods traditionally utilized in ecology and other disciplines perform quite poorly. Here we discuss more sophisticated methods for fitting these exponents based on cumulative distribution functions and maximum likelihood estimation. We illustrate their superior performance at estimating known …
"A New Species Of Freshwater Crab From Western Kenya" , Neil Cumberlidge, Michael Dobson
"A New Species Of Freshwater Crab From Western Kenya" , Neil Cumberlidge, Michael Dobson
Journal Articles
No abstract provided.
Diet Of Western Slimy Salamander, Plethodon Albagula (Caudata: Plethodontidae), From Two Mountain Ranges In Arkansas, Joseph Milanovich, Stanley E. Trauth, Tanja Mckay
Diet Of Western Slimy Salamander, Plethodon Albagula (Caudata: Plethodontidae), From Two Mountain Ranges In Arkansas, Joseph Milanovich, Stanley E. Trauth, Tanja Mckay
Biology: Faculty Publications and Other Works
We identified stomach contents of 80 Plethodon albagula (Western Slimy Salamander) from two mountain ranges in Arkansas (Ozark and Ouachita) to examine if regional differences in diet occur. Museum specimens from 1985 to 2005 were used from locations throughout each mountain range. Although a wide variety of prey were found in stomachs, Hymenoptera: Formicidae and Coleoptera: Carabidae were found to be the most important food items in the diet of P. albagula. Ants and beetles constituted 85% abundance of their total diet (79.6% Ozark and 90.1% Ouachita) and 52.2% of their total biomass (42.6% Ozark and 64.1% Ouachita). Seventy-eight and …