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Translocation And Telemetry Tracking Of Lake Sturgeon In The Menominee River, Mi / Wi, Jeremy G. Olach

Dissertations, Master's Theses and Master's Reports - Open

The Menominee River is a Michigan-Wisconsin boundary water historically traversed by lake sturgeon (Acipenser fulvescens), but now contains fragmented populations between hydroelectric dams. Though fish passage is currently being implemented on the lower dams, it is unclear whether sturgeon given access to historic spawning grounds would use them. In 2012 and 2013, a total of 15 pre-spawning sturgeon were captured, implanted with sonic transmitters and translocated upstream over two hydroelectric dams to the stretch below the historic spawning site of Sturgeon Falls. Sturgeon were then tracked via five stationary receivers from April 2012 until August 2013, and with …

Ecophysiological Responses Of Sugar Maple Roots To Climatic Conditions, Mickey Philip Jarvi

Dissertations, Master's Theses and Master's Reports - Open

The severity of future climate change resulting from anthropogenic alteration of the global C cycle will depend in part on feedbacks between atmospheric greenhouse gases and forest ecosystem carbon balance, but how these two systems will interact is not entirely understood. Forests are both major sinks and sources for atmospheric CO₂ through the processes of photosynthesis and ecosystem respiration. The balance between these two processes could be altered if autotrophic respiration were to increase exponentially with temperature as climate warms. Root respiration, and especially fineroot respiration (<1 mm diameter), is a major contributor to total ecosystem C exchange. A study to assess long-term responses of root respiration to warmer soil conditions was conducted at the SMART (sugar maple altered rainfall and temperature) experiment located in Alberta, MI at the Michigan Technological University’s Ford Center and Forest. It was found that acclimation of fine-root respiration in this system was not due to an insufficient supply of carbohydrates from photosynthesis (substrate limitation), but was the result of adenylate control. As a result, fine root respiration was constrained to levels needed to perform work required of the fine roots (e.g. nutrient acquisition). Acclimation also occurred for roots 1-2 mm in diameter at the 0-10 cm soil depth, but not in any roots larger than 2 mm or in roots of any size at deeper soil depths. As a result, at the ecosystem level, total root system respiration was 60% greater in warmed soil than in unwarmed soil. The studies in experimentally warmed sugar maple forests were complemented by an examination of fine-root respiration and root biomass at sixteen sugar maple forests located across a latitudinal gradient across sugar maple’s native range, spanning approximately 10°C of mean annual temperature. Sugar maple in the southern, warmer sites had lower root N, lower specific fine-root respiration at a given temperature, and less fine-root biomass than that from the northern cooler regions. Fine root respiration at ambient soil temperature actually decreased from north to south, despite a nearly 10°C increase in soil temperature. However, within sites respiration measured across three sample dates did increase with temperature. The next big question is whether these adjustments that exist across sugar maple’s range are plastic responses to l local climate or result from genotypic differences among populations in different locations. If the former is true, all sugar maple would be capable of acclimation, reduction in root biomass, and/or reduction in root N as mechanisms for dealing with climatic warming, and sugar maple would have a large capacity to adjust to future climate change. The latter would suggest that predicted rates of climatic warming could have negative impacts on this important species across its entire current range. The lack of changes in fine root biomass and root N concentration at the SMART study location after four plus years of soil warming support the possibility that differences along the latitudinal transect are largely the result of inherent genetic differences among population.

Fishery Co-Management Opportunities Between Tribal And State Agencies: Conflict To Collaboration, J. Marty Holtgren

Dissertations, Master's Theses and Master's Reports - Open

Over the past 40 years global recognition has occurred for indigenous groups to be represented and have input in how natural resources are managed. This has largely occurred because of how management decisions have consequences to indigenous groups that reach beyond natural resource issues but into cultural, spiritual, social and political elements including sovereignty, legitimacy, justice, equity and empowerment and using indigenous paradigms to meet indigenous needs. In the United States numerous legal agreements have been reached that pair state and tribal agencies into co-management. This project concerns a recent co-management agreement between the State of Michigan and five Native …

Using Indicators Of Biotic Integrity For Assessment Of Stream Condition, Stephanie A. Ogren

Dissertations, Master's Theses and Master's Reports - Open

Multiple indices of biotic integrity and biological condition gradient models have been developed and validated to assess ecological integrity in the Laurentian Great Lakes Region. With multiple groups such as Tribal, Federal, and State agencies as well as scientists and local watershed management or river-focused volunteer groups collecting data for bioassessment it is important that we determine the comparability of data and the effectiveness of indices applied to these data for assessment of natural systems. We evaluated the applicability of macroinvertebrate and fish community indices for assessing site integrity. Site quality (i.e., habitat condition) could be classified differently depending on …

Remediation Of Tetracycline From Water Sources Using Vetiver Grass (Chrysopogon Zizanioides L. Nash) And Tetracycline-Tolerant Root-Associated Bacteria, Aparupa Sengupta

Dissertations, Master's Theses and Master's Reports - Open

Antibiotics are emerging contaminants worldwide. Due to insufficient policy regulations, public awareness, and the constant exposure of the environment to antibiotic sources has created a major environmental concern. Wastewater treatment plants (WWTP) are not equipped to filter-out these compounds before the discharge of the disinfected effluent into water sources (e.g., lakes and streams) and current available technologies are not equipped to remediate these compounds from environmental sources. Hence, the challenge remains to establish a biological system to remove these antibiotics from wastewater. An invitro hydroponic remediation system was developed using vetiver grass (Chrysopogon zizanioides L. Nash) to remediate tetracycline …

Genetic Variation, Local Adaptation And Population Structure In North American Red Oak Species, Quercus Rubra L. And Q. Ellipsoidalis E. J. Hill, Jennifer F. Lind-Riehl

Dissertations, Master's Theses and Master's Reports - Open

Forest trees, like oaks, rely on high levels of genetic variation to adapt to varying environmental conditions. Thus, genetic variation and its distribution are important for the long-term survival and adaptability of oak populations. Climate change is projected to lead to increased drought and fire events as well as a northward migration of tree species, including oaks. Additionally, decline in oak regeneration has become increasingly concerning since it may lead to decreased gene flow and increased inbreeding levels. This will in turn lead to lowered levels of genetic diversity, negatively affecting the growth and survival of populations. At the same …

Design, Synthesis And Applications Of Fluorescent And Electrochemical Probes, Giri K. Vegesna

Dissertations, Master's Theses and Master's Reports - Open

“Seeing is believing” the proverb well suits for fluorescent imaging probes. Since we can selectively and sensitively visualize small biomolecules, organelles such as lysosomes, neutral molecules, metal ions, anions through cellular imaging, fluorescent probes can help shed light on the physiological and pathophysiological path ways. Since these biomolecules are produced in low concentrations in the biochemical pathways, general analytical techniques either fail to detect or are not sensitive enough to differentiate the relative concentrations. During my Ph.D. study, I exploited synthetic organic techniques to design and synthesize fluorescent probes with desirable properties such as high water solubility, high sensitivity and …

Denitrification In Soils: From Genes To Environmental Outcomes, Jianqiu Zheng

Dissertations, Master's Theses and Master's Reports - Open

Denitrification is an important process of global nitrogen cycle as it removes reactive nitrogen from the biosphere, and acts as the primary source of nitrous oxide (N₂O). This thesis seeks to gain better understanding of the biogeochemistry of denitrification by investigating the process from four different aspects: genetic basis, enzymatic kinetics, environmental interactions, and environmental consequences. Laboratory and field experiments were combined with modeling efforts to unravel the complexity of denitrification process under microbiological and environmental controls.

Dynamics of denitrification products observed in laboratory experiments revealed an important role of constitutive denitrification enzymes, whose presence were further confirmed …

Verifying Success Of Artificial Reefs In The Huron-Erie Corridor For Lake Sturgeon, Emily K. Bouckaert

Dissertations, Master's Theses and Master's Reports - Open

Lake sturgeon (Acipenser fulvescens) were historically abundant in the Huron-Erie Corridor (HEC), a 160 km river/channel network composed of the St. Clair River, Lake St. Clair, and the Detroit River that connects Lake Huron to Lake Erie. In the HEC, most natural lake sturgeon spawning substrates have been eliminated or degraded as a result of channelization and dredging. To address significant habitat loss in HEC, multi-agency restoration efforts are underway to restore spawning substrate by constructing artificial spawning reefs. The main objective of this study was to conduct post-construction monitoring of lake sturgeon egg deposition and larval emergence near two …

Factors Affecting Diporeia Growth Rates In Lake Superior, Miles J. Corcoran

Dissertations, Master's Theses and Master's Reports - Open

An ability to predict population dynamics of the amphipod Diporeia is important in understanding how energy pathways in the Lake Superior food web might be altered by disturbances to the ecosystem. Estimating growth rates for this prominent prey item for fish requires information on the physiological effects of changes to its environment. These effects have been investigated for Diporeia in other Great Lakes, but little is known about Lake Superior populations. The primary objective of this study is to obtain quantitative data for rates of Diporeia respiration and consumption that can be incorporated into a bioenergetics model for Lake Superior. …

Application Of Remote Sensing In Aquatic Ecosystems, Foad Yousef

Dissertations, Master's Theses and Master's Reports - Open

I utilized state the art remote sensing and GIS (Geographical Information System) techniques to study large scale biological, physical and ecological processes of coastal, nearshore, and offshore waters of Lake Michigan and Lake Superior. These processes ranged from chlorophyll a and primary production time series analysies in Lake Michigan to coastal stamp sand threats on Buffalo Reef in Lake Superior. I used SeaWiFS (Sea-viewing Wide Field-of-view Sensor) satellite imagery to trace various biological, chemical and optical water properties of Lake Michigan during the past decade and to investigate the collapse of early spring primary production. Using spatial analysis techniques, I …

Computational Prediction Of The Sporulation Network In Clostridium Thermocellum, Changyi Jiang

Dissertations, Master's Theses and Master's Reports - Open

Sporulation is a process in which some bacteria divide asymmetrically to form tough protective endospores, which help them to survive in a hazardous environment for a quite long time. The factors which can trigger this process are diverse. Heat, radiation, chemicals and lacking of nutrition can all lead to the formation of endospores. This phenomenon will lead to low productivity during industrial production. However, the sporulation mechanism in a spore-forming bacterium, Clostridium theromcellum, is still unclear. Therefore, if a regulation network of sporulation can be built, we may figure out ways to inhibit this process. In this study, a …

Evaluating Karner Blue Butterfly (Lycaeides Melissa Samuelis Nabokov) Habitat Selection In The State Of Wisconsin, Usa, Anna Nahuel Hess

Dissertations, Master's Theses and Master's Reports - Open

The federally endangered Karner blue butterfly (Lycaeides melissa samuelis Nabokov) persists in rare oak/pine grassland communities spanning across the Great Lakes region, relying on host plant wild blue lupine (Lupinus perennis). Conservation efforts since 1992 have led to the development of several programs that restore and monitor habitat. This study aims to evaluate Karner blue habitat selection in the state of Wisconsin and develop high-resolution tools for use in conservation efforts. Spatial predictive models developed during this study accurately predicted potential habitat across state properties based on soils and canopy cover, and identified ~51-100% of Karner blue occurrences based on …

Biofilm Responses To Salmon Carcass Analog Addition In Central Idaho Streams, Jonathan D. Ebel

Dissertations, Master's Theses and Master's Reports - Open

Pacific salmon populations have declined due to human activity in the Pacific Northwest, resulting in decreased delivery of marine-derived nutrients to streams. Managers use artificial nutrient additions to increase juvenile salmon growth and survival and assume that added nutrients stimulate biofilm production, which propagates up the food web to juvenile salmon. We assessed biofilm responses (standing crop, nutrient limitation, and metabolism) to experimental additions of salmon carcass analog in tributaries of the Salmon River, Idaho in 2010 and 2011. Biofilm standing crop and nutrient limitation did not respond to analog, but primary productivity and respiration increased in the subset of …

Uptake And Fate Of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine By Chrysopogon Zizanioides, Claire M. Doskey

Dissertations, Master's Theses and Master's Reports - Open

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a nitramine compound that has been used heavily by the military as an explosive. Manufacturing, use, and disposal of RDX have led to several contamination sites across the United States. RDX is both persistent in the environment and a threat to human health, making its remediation vital. The use of plants to extract RDX from the soil and metabolize it once it is in the plant tissue, is being considered as a possible solution. In the present study, the tropical grass Chrysopogon zizanioides was grown hydroponically in the presence RDX at 3 different concentration levels: 0.3, 1.1, …

Acute Alcohol Ingestion And Sympathetic Neural Responses During Orthostatic Stress In Humans, Sarah F. Stream

Dissertations, Master's Theses and Master's Reports - Open

Acute alcohol consumption has been reported to decrease mean arterial pressure (MAP) during orthostatic challenge, a response that may contribute to alcohol-mediated hypotension and eventually syncope. Muscle sympathetic nerve activity (MSNA) increases during orthostatic stress to help maintain MAP, yet the influence of alcohol on MSNA during orthostatic stress has not been determined. We hypothesized that alcohol ingestion would blunt arterial blood pressure and MSNA responses to progressive lower body negative pressure (LBNP). MAP, MSNA, and heart rate (HR) were recorded during progressive LBNP (-5, -10, -15, -20, -30, and -40 mmHg; 3 min/stage) in 30 subjects(age 24 ± 1 …

Functional Analysis Of Rice Bidirectional Promoters, Surendar R. Dhadi

Dissertations, Master's Theses and Master's Reports - Open

Bidirectional promoters regulate adjacent genes organized in a divergent fashion (head to head orientation). Several Reports pertaining to bidirectional promoters on a genomic scale exists in mammals. This work provides the essential background on theoretical and experimental work to carry out a genomic scale analysis of bidirectional promoters in plants.

A computational study was performed to identify putative bidirectional promoters and the over-represented cis-regulatory motifs from three sequenced plant genomes: rice (Oryza sativa), Arabidopsis thaliana, and Populus trichocarpa using the Plant Cis-acting Regulatory DNA Elements (PLACE) and PLANT CARE databases. Over-represented motifs along with their possible …

Inhibition Of L-Type Amino Acid Transport With Non-Physiological Amino Acids In The Pahenu2 Mouse Model Of Phenylketonuria, Kara R. Vogel

Dissertations, Master's Theses and Master's Reports - Open

Phenylketonuria, an autosomal recessive Mendelian disorder, is one of the most common inborn errors of metabolism. Although currently treated by diet, many suboptimal outcomes occur for patients. Neuropathological outcomes include cognitive loss, white matter abnormalities, and hypo- or demyelination, resulting from high concentrations and/or fluctuating levels of phenylalanine. High phenylalanine can also result in competitive exclusion of other large neutral amino acids from the brain, including tyrosine and tryptophan (essential precursors of dopamine and serotonin). This competition occurs at the blood brain barrier, where the L-type amino acid transporter, LAT1, selectively facilitates entry of large neutral amino acids. The hypothesis …

Impact Of Copper Mine Tailings (Stamp Sand) On Survival And Development Of Aquatic Organisms Near Gay, Michigan, Danielle M. Haak

Dissertations, Master's Theses and Master's Reports - Open

Heavy metal-rich copper mine tailings, called stamp sands, were dumped by mining companies directly into streams and along the Lake Superior shoreline, degrading Keweenaw Peninsula waterways. One of the largest disposal sites is near Gay, Michigan, where tailings have been moved along the shoreline by currents since mining ceased. As a result, the smallest sand particles have been washed into deeper water and are filling the interstitial spaces of Buffalo Reef, a critical lake trout spawning site. This research is the first to investigate if stamp sand is detrimental to survival and early development of eggs and larvae of lake …

Relationship Between Instream Habitat Characteristics, Emergent Insects, And Riparian Bird Communities, Kyle D. Forgette

Dissertations, Master's Theses and Master's Reports - Open

Streams and riparian areas can be intricately connected via physical and biotic interactions that influence habitat conditions and supply resource subsidies between these ecosystems. Streambed characteristics such as the size of substrate particles influence the composition and the abundance of emergent aquatic insects, which can be an important resource for riparian breeding birds. We predict fine sediment abundance in small headwater streams directly affects the composition and number of emergent insects while it may indirectly affect riparian bird assemblages. Streams with abundant fine sediments that embed larger substrates should have lower emergence of large insects such as phemeroptera, Plecoptera and …

Effects Of Fixed Night Shift Work On 24 Hour Blood Pressure Regulation, State Anxiety Levels And Total Sleep Time, Jennifer L. Witting

Dissertations, Master's Theses and Master's Reports - Open

Nearly 22 million Americans operate as shift workers, and shift work has been linked to the development of cardiovascular disease (CVD). This study is aimed at identifying pivotal risk factors of CVD by assessing 24 hour ambulatory blood pressure, state anxiety levels and sleep patterns in 12 hour fixed shift workers. We hypothesized that night shift work would negatively affect blood pressure regulation, anxiety levels and sleep patterns. A total of 28 subjects (ages 22-60) were divided into two groups: 12 hour fixed night shift workers (n=15) and 12 hour fixed day shift workers (n=13). 24 hour ambulatory blood pressure …

Omega-3 Fatty Acids And The Neurovascular Responses To Mental Stress In Humans, Christopher Elmer Schwartz

Dissertations, Master's Theses and Master's Reports - Open

Hypertension is the most prevalent form of cardiovascular disease (CVD) in the world, and is known to increase the risk for developing other diseases. Recently, the American Heart Association introduced a new classification of blood pressure, prehypertension (PHT). The criteria for PHT include a systolic of 120-139 mmHg and/or a diastolic blood pressure of 80-89 mmHg. It has been observed that individuals with PHT have a higher risk of developing hypertension later in life. Therefore, it is important to understand the mechanisms contributing to PHT in order to possibly prevent hypertension. Omega-3 fatty acids found in fish oils have been …

Extracellular Matrix Of The Charophycean Green Algae, Sarah Nelson Kiemle

Dissertations, Master's Theses and Master's Reports - Open

A comprehensive knowledge of cell wallstructure and function throughout the plant kingdom is essential to understanding cell wall evolution. The fundamental understanding of the charophycean green algal cell wall is broadening. The similarities and differences that exist between land plant and algal cell walls provide opportunities to understand plant evolution. A variety of polymers previously associated with higher plants were discovered in the charophycean green algae (CGA), including homogalacturonans, cross-linking glycans, arabinogalactan protein, β-glucans, and cellulose. The cellulose content of CGA cell walls ranged from 6% to 43%, with the higher valuescomparable to that found in the primary cell wall …

Effects Of Pediatric Adiposity On Heart Rate Variability, Angela K. Lucas

Dissertations, Master's Theses and Master's Reports - Open

The relationship between obesity and heart rate variability (HRV) has been studied in adults and adolescents, but is not determined in young pediatrics. The purpose of this study was to assess autonomic activity using HRV in a pediatric population. We hypothesized that obese children would have reduced parasympathetic and increased sympathetic activity compared to age-matched subjects. 42 pediatric subjects (ages 3-5) were classified into 3 groups based on body mass index-for-age; normal, overweight and obese. HRV and respiratory rate were recorded during 3 minute baseline, 2 minute isometric handgrip and 3 minute recovery. HRV was analyzed in the time domain …

Optimization Of Ethanol Production By Yeasts From Lignocellulosic Feedstocks, Stephanie Lee Groves

Dissertations, Master's Theses and Master's Reports - Open

Ethanol from lignocellulosic feedstocks is not currently competitive with corn-based ethanol in terms of yields and commercial feasibility. Through optimization of the pretreatment and fermentation steps this could change. The overall goal of this study was to evaluate, characterize, and optimize ethanol production from lignocellulosic feedstocks by the yeasts Saccharomyces cerevisiae (strain Ethanol Red, ER) and Pichia stipitis CBS 6054.

Through a series of fermentations and growth studies, P. stipitis CBS 6054 and S. cerevisiae (ER) were evaluated on their ability to produce ethanol from both single substrate (xylose and glucose) and mixed substrate (five sugars present in hemicellulose) fermentations. …

Screening, Optimization And Extraction Of Polyhydroxyalkanoates And Peptidoglycan From Bacillus Megaterium, Louis Paul-Anthony Paladino

Dissertations, Master's Theses and Master's Reports - Open

Bioplastics are polymers (such as polyesters) produced from bacterial fermentations that are biodegradable and nonhazardous. They are produced by a wide variety of bacteria and are made only when stress conditions allow, such as when nutrient levels are low, more specifically levels of nitrogen and oxygen. These stress conditions cause certain bacteria to build up excess carbon deposits as energy reserves in the form of polyhydroxyalkanoates (PHAs). PHAs can be extracted and formed into actual plastic with the same strength of conventional, synthetic-based plastics without the need to rely on foreign petroleum.

The overall goal of this project was to …

Arrangement Of Gene Pairs, Retrotransposon Insertions, And Regulation Of Gene Expression In Plants, Nicholas D. Krom

Dissertations, Master's Theses and Master's Reports - Open

Plant genomes are extremely complex. Myriad factors contribute to their evolution and organization, as well as to the expression and regulation of individual genes. Here we present investigations into several such factors and their influence on genome structure and gene expression: the arrangement of pairs of physically adjacent genes, retrotransposons closely associated with genes, and the effect of retrotransposons on gene pair evolution.

All sequenced plant genomes contain a significant fraction of retrotransposons, including that of rice. We investigated the effects of retrotransposons within rice genes and within a 1 kb putative promoter region upstream of each gene. We found …

Ecology Of Larval Fishes And Large Zooplankton In The Keweenaw Current Region Of Lake Superior, With Special Focus On Lake Herring, Coregonus Artedi, Jason K. Oyadomari

Dissertations, Master's Theses and Master's Reports - Open

I assessed the influence of the Keweenaw Current and spring thermal bar on the distribution of larval fishes and large zooplankton in Lake Superior. In 1998 and 1999, samples were collected from inshore (0.2 – 3.0 km from shore) and offshore (5.0 – 9.0 km from shore) locations on three transects off the western coast of the Keweenaw Peninsula, Michigan. For larval fishes, density and size distribution patterns of lake herring (Coregonus artedi), rainbow smelt (Osmerus mordax), burbot (Lota lota), deepwater sculpin (Myoxocephalus thompsoni), and spoonhead sculpin (Cottus ricei) suggest …