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Automated Conserved Non-Coding Sequence (Cns) Discovery Reveals Differences In Gene Content And Promoter Evolution Among Grasses, Gina Marie Turco, James C. Schnable, Brent S. Pedersen, Michael Freeling
Automated Conserved Non-Coding Sequence (Cns) Discovery Reveals Differences In Gene Content And Promoter Evolution Among Grasses, Gina Marie Turco, James C. Schnable, Brent S. Pedersen, Michael Freeling
Department of Agronomy and Horticulture: Faculty Publications
Conserved non-coding sequences (CNS) are islands of non-coding sequence that, like protein coding exons, show less divergence in sequence between related species than functionless DNA. Several CNSs have been demonstrated experimentally to function as cis-regulatory regions. However, the specific functions of most CNSs remain unknown. Previous searches for CNS in plants have either anchored on exons and only identified nearby sequences or required years of painstaking manual annotation. Here we present an open source tool that can accurately identify CNSs between any two related species with sequenced genomes, including both those immediately adjacent to exons and distal sequences separated by …
Arbuscular Mycorrhizal Fungi Differ In Their Ability To Regulate The Expression Of Phosphate Transporters In Maize (Zea Mays L.), Hui Tian, Rhae A. Drijber, Xiaolin Li, Daniel N. Miller, Brian J. Wienhold
Arbuscular Mycorrhizal Fungi Differ In Their Ability To Regulate The Expression Of Phosphate Transporters In Maize (Zea Mays L.), Hui Tian, Rhae A. Drijber, Xiaolin Li, Daniel N. Miller, Brian J. Wienhold
Department of Agronomy and Horticulture: Faculty Publications
Previous studies have found that some phosphate (Pi) starvation inducible transporter genes are downregulated and arbuscular mycorrhizal (AM) inducible Pi transporter genes are upregulated in maize roots associated with the fungus Glomus intraradices. However, little is known about the functional diversity of different AM fungal species in influencing the expression of Pi transporters in maize roots. Here, we studied the expression of two Pi transporter genes ZEAma:Pht1;3 (Pi starvation inducible) and ZEAma:Pht1;6 (AM inducible) in maize root colonized by different AM fungal inoculants. Non-mycorrhizal maize, maize colonized by Glomus deserticola (CA113), Glomus intraradices (IA506), Glomus mosseae (CA201), Gigaspora gigantea …
Estimating Crop Yield Potential At Regional To National Scales, Justin Van Wart, Kurt Christian Kersebaum, Shaobing Peng, Maribeth Milner, Kenneth Cassman
Estimating Crop Yield Potential At Regional To National Scales, Justin Van Wart, Kurt Christian Kersebaum, Shaobing Peng, Maribeth Milner, Kenneth Cassman
Department of Agronomy and Horticulture: Faculty Publications
World population will increase 35% by 2050, which may require doubling crop yields on existing farm land to minimize expansion of agriculture into remaining rainforests, wetlands, and grasslands. Whether this is possible depends on closing the gap between yield potential (Yp, yield without pest, disease, nutrient or water stresses, or Yw under water-limited rainfed conditions) and current average farm yields in both developed and developing countries. Quantifying the yield gap is therefore essential to inform policies and prioritize research to achieve food security without environmental degradation. Previous attempts to estimate Yp and Yw at a global level have been too …